ZRdb KZFP & Repeats
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LTR_LTR12F

  • Name
    LTR12F
  • Repbase
    LTR12F
  • Type
    LTR
  • Emergence
    28.9 Mya
  • Dfam Id
    DF0000405
Description :

Preference for insertion in NTAN. It's 3'end does conform to that of theother LTR12 subfams (LTR12B has an exceptional extension).
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgagaggtgaagccagctggacttcctgggtcgagtggggacttggagaacttttctgtcttacaagaggattgtaaaatgcaccaatcagcgctctgtaaaaacgcaccaatcagcgctctgtagctagcaagaggattgtaaaatgcaccaatcagcgctctgtaaaatgcaccaatcagcgctctgtaaaatgcaccaatcagcaggatcctaaaagtagccaatcgcggggaggattgaaaaaagggcactctgataggacagaaacggaacatgggaggggacaaataagggaataaaagctggccaccccagccagcagcggcaacccgctcgggtccccttccacgctgtggaagctttgttctttcgctcttcacaataaaccttgctgccgctcactctttgggtccgtgccatctttaagagctgtaacactcaccgcgaaggtccgcggcttcattcttgaagtcagcgagaccacgaacccaccggnaggaaccaactccggacaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF766 35 43.0 Weakly correlated
2 ZNF669 27 43.0 Weakly correlated
3 ZNF382 26 99.0 Weakly correlated
4 ZNF506 25 28.9 Highly correlated
5 ZIM3 17 87.0 Weakly correlated
6 ZNF479 15 6.4 Weakly correlated
7 ZNF589 13 28.9 Highly correlated
8 ZNF197 13 99.0 Weakly correlated
9 ZNF597 12 94.0 Weakly correlated
10 ZKSCAN8 10 160.0 Weakly correlated
11 ZNF175 10 94.0 Weakly correlated
12 ZNF394 10 99.0 Weakly correlated
13 ZFP57 9 87.0 Weakly correlated
14 ZNF28 9 28.9 Highly correlated
15 ZNF793 7 99.0 Weakly correlated
16 ZNF584 6 99.0 Weakly correlated
17 ZNF2 6 99.0 Weakly correlated
18 ZNF182 5 99.0 Weakly correlated
19 ZFP37 4 99.0 Weakly correlated
20 ZNF317 4 99.0 Weakly correlated
21 ZNF519 4 19.6 Moderately correlated
22 ZNF274 4 99.0 Weakly correlated
23 ZNF641 3 99.0 Weakly correlated
24 ZNF324 3 99.0 Weakly correlated
25 ZFP69B 3 99.0 Weakly correlated
26 ZNF680 3 28.9 Highly correlated
27 ZIK1 2 87.0 Weakly correlated
28 ZNF560 2 43.0 Weakly correlated
29 ZNF101 2 43.0 Weakly correlated
30 ZNF610 2 28.9 Highly correlated
31 ZNF486 2 8.6 Weakly correlated
32 ZNF251 2 94.0 Weakly correlated
33 ZNF701 2 28.9 Highly correlated
34 ZNF263 2 180.0 Weakly correlated
35 ZNF786 2 99.0 Weakly correlated
36 ZNF695 1 28.9 Highly correlated
37 ZNF700 1 28.9 Highly correlated
38 ZNF679 1 28.9 Highly correlated
39 ZNF792 1 94.0 Weakly correlated
40 ZNF671 1 94.0 Weakly correlated
41 ZNF705B 1 28.9 Highly correlated
42 ZNF735 1 28.9 Highly correlated
43 ZNF8 1 99.0 Weakly correlated
44 ZNF778 1 74.0 Weakly correlated
45 ZNF558 1 99.0 Weakly correlated
46 ZNF534 1 19.6 Moderately correlated
47 ZNF528 1 43.0 Weakly correlated
48 ZNF510 1 99.0 Weakly correlated
49 ZNF429 1 28.9 Highly correlated
50 ZNF418 1 43.0 Weakly correlated
51 ZNF347 1 43.0 Weakly correlated
52 ZNF284 1 43.0 Weakly correlated
53 ZNF273 1 28.9 Highly correlated
54 ZNF264 1 99.0 Weakly correlated
55 ZNF257 1 0.0 Weakly correlated
56 ZNF248 1 99.0 Weakly correlated
57 ZNF222 1 43.0 Weakly correlated
58 ZNF18 1 160.0 Weakly correlated
59 ZNF189 1 99.0 Weakly correlated
60 ZNF140 1 99.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF479 12 6.4 Weakly correlated
2 ZIM3 7 87.0 Weakly correlated
3 ZNF28 3 28.9 Highly correlated
4 ZNF766 3 43.0 Weakly correlated
5 ZNF793 3 99.0 Weakly correlated
6 ZFP57 1 87.0 Weakly correlated
7 ZNF273 1 28.9 Highly correlated
8 ZNF597 1 94.0 Weakly correlated
9 ZNF189 1 99.0 Weakly correlated
10 ZNF347 1 43.0 Weakly correlated
11 ZNF418 1 43.0 Weakly correlated
12 ZNF429 1 28.9 Highly correlated
13 ZNF560 1 43.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats