ZRdb KZFP & Repeats
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LTR_LTR12E

  • Name
    LTR12E
  • Repbase
    LTR12E
  • Type
    LTR
  • Emergence
    19.6 Mya
  • Dfam Id
    DF0000404
Description :

Another subfamily obtained primarily by variation of the R66-likeminisatellite.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgagaggtgacagcgtgctggcagccctcgcagccctcgctcgctctcggcgcctcctcggcctcggcgcccactctggccgcgcttgaggagcccttcagcccgccgctgcactgtgggagcccctctctgggctggccgaggccggagccggctccctcngcttgcggggaggtgtggagggagaggcgcgggcgggaaccggggctgcgcgcggcgctcgcgggccagcgcgagttccgggtgggcgcgggctcggcgggccccgcactcggagcggccggccggccccgccggccccgggcagtgaggggcttagcacccgggccagcggctgcggagggtgcgccgggtcccccagcagtgccggcccgccggcgccgcgctcganttctcgccgggcctcagccgcctccccgcggggcagggctcgggacctgcagcccgccatgcctgagcctcccacccnctccgtgggctcctgcgcggcccgagcctccccgacgagcgccgccccctgctccgcggcgcccggtcccatcgaccgcccaagggctgaggagtgcgggcgcacggcgcgggactggcgggcagctccacccgcggccccggtgcgggatccactgggtgaagccagctgggctcctgagtctggtggggacttggagaacctttatgtctagctaagggattgtaaatacaccaatcggcactctgtgtctagctcaaggtttgtaaacgcaccaatcagcaccctgtgtctagctcagggtttgtgaatgcaccaatcggcgctctgtatctagctaatctggtggggacttggagaacctttgtgtcnangnnctgtancgnaccaatcngncggggncgcgnagnacctctgtgtctagctcagggattgtaaacgcaccaatcagcgccctgtcaaaacggaccaatcggctctctgtaaaatggaccaatcagcaggatgtgggtggggccagataagagaataaaagcaggctgcccgagccagcagcggcaacccgctcgggtccccttccacgctgtggaagctttgttctttcgctctttgcaataaatcttgctgctgctcactctttgggtccgcgctgcctttatgagctgtaacactcaccgcgaaggtctgcagcttcactcctgaagccagcgagaccacgaacccaccgggaggaacgaacaactccggacgcgccgcctttaagagctgtaacactcaccgcgagggtccgcggcttcattcttgaagtccagcgagaccaagaacccaccagaaggaagaaactccggacaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF705B 48 28.9 Weakly correlated
2 ZNF705D 34 28.9 Weakly correlated
3 ZNF850 26 28.9 Weakly correlated
4 ZNF382 26 99.0 Weakly correlated
5 ZNF560 23 43.0 Weakly correlated
6 ZNF679 20 28.9 Weakly correlated
7 ZNF2 18 99.0 Weakly correlated
8 ZFP57 14 87.0 Weakly correlated
9 ZNF610 14 28.9 Weakly correlated
10 ZNF202 13 160.0 Weakly correlated
11 ZNF479 12 6.4 Moderately correlated
12 ZFP37 10 99.0 Weakly correlated
13 ZNF394 10 99.0 Weakly correlated
14 ZNF324 10 99.0 Weakly correlated
15 ZFP69B 9 99.0 Weakly correlated
16 ZNF263 9 180.0 Weakly correlated
17 ZNF18 8 160.0 Weakly correlated
18 ZNF766 8 43.0 Weakly correlated
19 ZNF114 8 28.9 Weakly correlated
20 ZNF101 7 43.0 Weakly correlated
21 ZKSCAN1 7 160.0 Weakly correlated
22 ZNF519 7 19.6 Highly correlated
23 ZNF350 7 99.0 Weakly correlated
24 ZNF483 6 99.0 Weakly correlated
25 ZNF793 6 99.0 Weakly correlated
26 ZNF605 5 99.0 Weakly correlated
27 ZNF273 5 28.9 Weakly correlated
28 ZNF589 5 28.9 Weakly correlated
29 ZNF584 5 99.0 Weakly correlated
30 ZKSCAN8 5 160.0 Weakly correlated
31 ZNF506 5 28.9 Weakly correlated
32 ZNF251 4 94.0 Weakly correlated
33 ZNF558 4 99.0 Weakly correlated
34 ZNF669 4 43.0 Weakly correlated
35 ZNF547 4 74.0 Weakly correlated
36 ZNF528 4 43.0 Weakly correlated
37 ZNF682 4 28.9 Weakly correlated
38 ZNF197 4 99.0 Weakly correlated
39 ZNF420 3 94.0 Weakly correlated
40 ZNF441 3 43.0 Weakly correlated
41 ZIM3 3 87.0 Weakly correlated
42 ZNF554 3 99.0 Weakly correlated
43 ZNF641 3 99.0 Weakly correlated
44 ZNF735 3 28.9 Weakly correlated
45 ZNF695 3 28.9 Weakly correlated
46 ZNF597 3 94.0 Weakly correlated
47 ZNF543 3 99.0 Weakly correlated
48 ZNF282 3 319.0 Weakly correlated
49 ZNF534 3 19.6 Highly correlated
50 ZNF37A 2 99.0 Weakly correlated
51 ZNF557 2 15.2 Moderately correlated
52 ZNF230 2 28.9 Weakly correlated
53 ZNF846 2 74.0 Weakly correlated
54 ZNF175 2 94.0 Weakly correlated
55 ZNF257 2 0.0 Weakly correlated
56 ZNF30 2 94.0 Weakly correlated
57 ZNF320 2 28.9 Weakly correlated
58 ZNF786 2 99.0 Weakly correlated
59 ZNF28 2 28.9 Weakly correlated
60 ZNF649 1 28.9 Weakly correlated
61 ZNF778 1 74.0 Weakly correlated
62 ZNF674 1 99.0 Weakly correlated
63 ZNF699 1 99.0 Weakly correlated
64 ZNF701 1 28.9 Weakly correlated
65 ZNF510 1 99.0 Weakly correlated
66 ZNF792 1 94.0 Weakly correlated
67 ZNF730 1 19.6 Highly correlated
68 ZNF75D 1 94.0 Weakly correlated
69 ZNF347 1 43.0 Weakly correlated
70 ZNF133 1 99.0 Weakly correlated
71 ZNF160 1 74.0 Weakly correlated
72 ZNF189 1 99.0 Weakly correlated
73 ZNF224 1 69.0 Weakly correlated
74 ZNF264 1 99.0 Weakly correlated
75 ZNF274 1 99.0 Weakly correlated
76 ZNF302 1 43.0 Weakly correlated
77 ZNF333 1 99.0 Weakly correlated
78 ZNF334 1 99.0 Weakly correlated
79 ZNF343 1 74.0 Weakly correlated
80 ZNF578 1 15.2 Moderately correlated
81 ZNF44 1 43.0 Weakly correlated
82 ZNF468 1 28.9 Weakly correlated
83 ZNF471 1 94.0 Weakly correlated
84 ZNF480 1 43.0 Weakly correlated
85 ZNF124 1 43.0 Weakly correlated
86 ZNF527 1 99.0 Weakly correlated
87 ZNF530 1 28.9 Weakly correlated
88 ZNF549 1 87.0 Weakly correlated
89 ZNF100 1 28.9 Weakly correlated
90 ZNF561 1 43.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF850 26 28.9 Weakly correlated
2 ZNF479 7 6.4 Moderately correlated
3 ZNF793 4 99.0 Weakly correlated
4 ZNF263 4 180.0 Weakly correlated
5 ZNF483 3 99.0 Weakly correlated
6 ZNF2 3 99.0 Weakly correlated
7 ZNF506 2 28.9 Weakly correlated
8 ZNF350 2 99.0 Weakly correlated
9 ZNF202 1 160.0 Weakly correlated
10 ZNF549 1 87.0 Weakly correlated
11 ZNF530 1 28.9 Weakly correlated
12 ZNF28 1 28.9 Weakly correlated
13 ZNF197 1 99.0 Weakly correlated
14 ZNF334 1 99.0 Weakly correlated
15 ZFP57 1 87.0 Weakly correlated
16 ZNF175 1 94.0 Weakly correlated
17 ZNF75D 1 94.0 Weakly correlated
18 ZNF468 1 28.9 Weakly correlated
19 ZNF347 1 43.0 Weakly correlated
20 ZIM3 1 87.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF850 28.9 Weakly correlated