ZRdb KZFP & Repeats
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LTR_LTR12D

  • Name
    LTR12D
  • Repbase
    LTR12D
  • Type
    LTR
  • Emergence
    19.6 Mya
  • Dfam Id
    DF0000403
Description :

A variant of LTR12C with internal indels.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgagaggtgacaacgtgctagcagccctcgctcgctctcggcgcctcctcggcctcggcgtccgctctggccgcgctcgaggagcccttcagcccgccgctgcgctgtgggggcccctctctggggctggccgaggccggagccggctccctctgctcgcggggaggtgtggagggagaggcgcgggcgggagccggggctgcgcgcggcgctcgcgggccggcgcgggttccgggtgggcgcgggctcggcgggccccgcactcggcgcggccggccggcgcctgctgggcttgatcgggggacgagctccctctgggctgccggagtgcccgggctaggtgccgcaaagtcccgcggcgagtgccagtgagaggtgaagccggctgggcttctgggtcgggtggggacttggagaacttttctgtctagctaaaggattgtaaacgcaccaatcagcactctgtgtctagctaaaggtttgtaaacgcaccaatcagcactctgtgtctagctaaaggtttgtaaacgcaccaatcagcgctctgtgtctagctaatcnggtggggacttggagaacttttgtgtctagctaaaggattgtaaacgcaccaatcagcactctgtgtctagctaaaggtttgtaaacgcaccaatcagcactctgtcaaaacggaccaatcagctctctgtaaaacggaccaatcagctctctgtaaaatggaccaatcagctctctgtaaaatggaccaatcagcaggatgtgggtggggccagataagggaataaaagcaggccacccgagccagcagcggcaacccgctcgggtccccttccacgctgtggaagctttgttctttcgctcttcgcaataaatcttgctgctgctcactctttgggtccgcgccgcctttatgagctgtaacactcaccgcgaaggtctgcagcttcactcctgaagccagcgagaccacgaacccaccgggaggaacgaacaactccggacggaaggaacgaacaactccggacgcgccgcctttaagagctgtaacactcaccgcgaaggtctgcagcttcactcctgaagtcagcgagaccacgaacccaccagaaggaagaaactccggacacatctgaacatctgaaggaacaaactccggacacaccatctttaagaactgtaacactcaccgcgagggtccgcggcttcattcttgaagtcagcgagaccaagaacccaccaattccggacaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZFP57 72 87.0 Weakly correlated
2 ZNF705B 59 28.9 Weakly correlated
3 ZNF705D 39 28.9 Weakly correlated
4 ZNF560 30 43.0 Weakly correlated
5 ZNF479 30 6.4 Moderately correlated
6 ZNF506 29 28.9 Weakly correlated
7 ZNF793 28 99.0 Weakly correlated
8 ZNF669 26 43.0 Weakly correlated
9 ZNF382 16 99.0 Weakly correlated
10 ZNF2 13 99.0 Weakly correlated
11 ZNF680 13 28.9 Weakly correlated
12 ZNF766 11 43.0 Weakly correlated
13 ZNF534 11 19.6 Highly correlated
14 ZNF263 11 180.0 Weakly correlated
15 ZNF786 9 99.0 Weakly correlated
16 ZNF649 8 28.9 Weakly correlated
17 ZNF350 7 99.0 Weakly correlated
18 ZNF679 7 28.9 Weakly correlated
19 ZNF251 7 94.0 Weakly correlated
20 ZFP69B 6 99.0 Weakly correlated
21 ZNF317 6 99.0 Weakly correlated
22 ZNF850 6 28.9 Weakly correlated
23 ZNF483 6 99.0 Weakly correlated
24 ZIM3 5 87.0 Weakly correlated
25 ZNF461 5 99.0 Weakly correlated
26 ZNF114 5 28.9 Weakly correlated
27 ZNF605 5 99.0 Weakly correlated
28 ZNF567 4 99.0 Weakly correlated
29 ZNF28 4 28.9 Weakly correlated
30 ZNF558 4 99.0 Weakly correlated
31 ZNF18 4 160.0 Weakly correlated
32 ZFP37 3 99.0 Weakly correlated
33 ZNF845 3 28.9 Weakly correlated
34 ZNF141 3 43.0 Weakly correlated
35 ZNF282 3 319.0 Weakly correlated
36 ZNF394 3 99.0 Weakly correlated
37 ZNF202 3 160.0 Weakly correlated
38 ZNF723 2 15.2 Moderately correlated
39 ZNF765 2 8.6 Moderately correlated
40 ZNF519 2 19.6 Highly correlated
41 ZNF763 2 15.2 Moderately correlated
42 ZNF554 2 99.0 Weakly correlated
43 ZNF610 2 28.9 Weakly correlated
44 ZNF682 2 28.9 Weakly correlated
45 ZNF585B 2 99.0 Weakly correlated
46 ZNF490 2 43.0 Weakly correlated
47 ZNF589 2 28.9 Weakly correlated
48 ZNF641 2 99.0 Weakly correlated
49 ZNF257 2 0.0 Weakly correlated
50 ZNF169 2 94.0 Weakly correlated
51 ZNF343 2 74.0 Weakly correlated
52 ZNF320 2 28.9 Weakly correlated
53 ZNF417 2 28.9 Weakly correlated
54 ZNF197 2 99.0 Weakly correlated
55 ZNF302 2 43.0 Weakly correlated
56 ZNF425 2 94.0 Weakly correlated
57 ZKSCAN8 2 160.0 Weakly correlated
58 ZNF440 2 28.9 Weakly correlated
59 ZNF441 2 43.0 Weakly correlated
60 ZNF468 2 28.9 Weakly correlated
61 ZNF222 1 43.0 Weakly correlated
62 ZNF234 1 99.0 Weakly correlated
63 ZNF695 1 28.9 Weakly correlated
64 ZNF749 1 28.9 Weakly correlated
65 ZNF778 1 74.0 Weakly correlated
66 ZNF75D 1 94.0 Weakly correlated
67 ZNF175 1 94.0 Weakly correlated
68 ZNF133 1 99.0 Weakly correlated
69 ZNF674 1 99.0 Weakly correlated
70 ZNF10 1 99.0 Weakly correlated
71 ZNF101 1 43.0 Weakly correlated
72 ZNF813 1 28.9 Weakly correlated
73 ZKSCAN1 1 160.0 Weakly correlated
74 ZNF8 1 99.0 Weakly correlated
75 ZNF92 1 28.9 Weakly correlated
76 ZNF607 1 43.0 Weakly correlated
77 ZNF487 1 28.9 Weakly correlated
78 ZNF445 1 99.0 Weakly correlated
79 ZNF552 1 28.9 Weakly correlated
80 ZNF429 1 28.9 Weakly correlated
81 ZNF563 1 28.9 Weakly correlated
82 ZNF578 1 15.2 Moderately correlated
83 ZNF584 1 99.0 Weakly correlated
84 ZNF586 1 43.0 Weakly correlated
85 ZNF347 1 43.0 Weakly correlated
86 ZNF681 1 28.9 Weakly correlated
87 ZNF324 1 99.0 Weakly correlated
88 ZNF611 1 19.6 Highly correlated
89 ZNF624 1 99.0 Weakly correlated
90 ZNF304 1 99.0 Weakly correlated
91 ZNF500 1 160.0 Weakly correlated
92 ZNF675 1 8.6 Moderately correlated
93 ZNF284 1 43.0 Weakly correlated
94 ZNF273 1 28.9 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZFP57 25 87.0 Weakly correlated
2 ZNF479 16 6.4 Moderately correlated
3 ZNF506 6 28.9 Weakly correlated
4 ZNF850 6 28.9 Weakly correlated
5 ZIM3 4 87.0 Weakly correlated
6 ZNF317 4 99.0 Weakly correlated
7 ZNF567 4 99.0 Weakly correlated
8 ZNF793 3 99.0 Weakly correlated
9 ZFP69B 2 99.0 Weakly correlated
10 ZNF350 2 99.0 Weakly correlated
11 ZNF2 2 99.0 Weakly correlated
12 ZNF382 2 99.0 Weakly correlated
13 ZNF705B 2 28.9 Weakly correlated
14 ZNF417 2 28.9 Weakly correlated
15 ZNF28 2 28.9 Weakly correlated
16 ZNF263 2 180.0 Weakly correlated
17 ZNF441 1 43.0 Weakly correlated
18 ZNF445 1 99.0 Weakly correlated
19 ZNF679 1 28.9 Weakly correlated
20 ZNF766 1 43.0 Weakly correlated
21 ZNF705D 1 28.9 Weakly correlated
22 ZNF534 1 19.6 Highly correlated
23 ZNF75D 1 94.0 Weakly correlated
24 ZNF320 1 28.9 Weakly correlated
25 ZNF343 1 74.0 Weakly correlated
26 ZNF695 1 28.9 Weakly correlated
27 ZNF610 1 28.9 Weakly correlated
28 ZNF141 1 43.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZFP57 87.0 Weakly correlated
2 ZNF506 28.9 Weakly correlated
3 ZNF850 28.9 Weakly correlated