ZRdb KZFP & Repeats
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LTR_LTR12C

  • Name
    LTR12C
  • Repbase
    LTR12C
  • Type
    LTR
  • Emergence
    19.6 Mya
  • Dfam Id
    DF0000402
Description :

This sequence is a hybrid between PTR5 and LTR12.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgtgagaggtgacagcgtgctggcagtcctcacagccctcgctcgctctcggcgcctcctctgcctgggctcccactttggcggcacttgaggagcccttcagcccgccgctgcactgtgggagcccctttctgggctggccaaggccggagccggctccctcagcttgcggggaggtgtggagggagaggcgcgagcgggaaccggggctgcgcgcggcgcttgcgggccagctggagttccgggtgggcgtgggctcggcgggccccgcactcggagcggccggccggcccgccggccccgggcagtgaggggcttagcacccgggccagcggctgcggagggtgtactgggtcccccagcagtgccggcccaccggcgctgcgctcgatttctcgccgggccttagctgccttcccgcggggcagggctcgggacctgcagcccgccatgcctgagcctcccccccccntccgtgggctcctgtgcggcccgagcctccccgacgagcgccgccccctgctccacggcgcccagtcccatcgaccacccaagggctgaggagtgcgggcgcacggcgcgggactggcaggcagctccacctgcggccccggtgcgggatccactgggtgaagccagctgggctcctgagtctggtggggacntggagaacctttatgtctagctcagggattgtaaatacaccaatcggcactctgtatctagctcaaggtttgtaaacacaccaatcagcaccctgtgtctagctcagggtttgtgaatgcaccaatcgacactctgtnatctagctactctggtggggncttggagaacctttatgtctagctnagggattgtaaatacaccaatcggcactctgtatctagctcaaggtttgtaaacgcaccaatcagcaccctgtgtctagctcagggtttgtgaatgcaccaatcgacactctgtatctagctaatctggtggggacgtggagaacctttgtgtctagctcagggattgtaaacgcaccaatcagcgccctgtcaaaacggaccantcggcnctctgnnnnnnagaccantcggctctccgnnnnntggaccaatcagcaggatgtgggtggggccagataagagaataaaagcaggctgcccgagccagcagtggcaacccgctcgggtccccttccacactgtggaagctttgttctttcgctctttgcaataaatcttgctgctgctcactctttgggtccacactgcctttatgagctgtaacactcaccgcgaaggtctgcagcttcactcctgaagccagcgagaccacgagcccaccgggaggaacgaacaactccagacgcgccgccttaagagctgtaacactcaccgcgaaggtctgcagcttcactcctgagccagcgagaccacgaacccaccagaaggaagaaactccgaacacatccgaacatcagaaggaacaaactccggacgcgccgcctttaagagctgtaacactcaccgcgagggtccgcggcttcattcttgaagtcagtgagaccaagaacccaccaattccggacaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF705B 787 28.9 Weakly correlated
2 ZNF560 552 43.0 Weakly correlated
3 ZNF705D 470 28.9 Weakly correlated
4 ZNF479 468 6.4 Moderately correlated
5 ZFP57 355 87.0 Weakly correlated
6 ZNF679 181 28.9 Weakly correlated
7 ZNF850 172 28.9 Weakly correlated
8 ZNF793 161 99.0 Weakly correlated
9 ZNF202 146 160.0 Weakly correlated
10 ZNF2 141 99.0 Weakly correlated
11 ZNF382 123 99.0 Weakly correlated
12 ZNF320 108 28.9 Weakly correlated
13 ZNF483 79 99.0 Weakly correlated
14 ZNF317 57 99.0 Weakly correlated
15 ZNF605 47 99.0 Weakly correlated
16 ZNF649 47 28.9 Weakly correlated
17 ZNF682 47 28.9 Weakly correlated
18 ZNF610 45 28.9 Weakly correlated
19 ZNF766 45 43.0 Weakly correlated
20 ZNF114 44 28.9 Weakly correlated
21 ZNF461 43 99.0 Weakly correlated
22 ZNF251 42 94.0 Weakly correlated
23 ZNF506 38 28.9 Weakly correlated
24 ZNF680 38 28.9 Weakly correlated
25 ZNF669 36 43.0 Weakly correlated
26 ZNF350 35 99.0 Weakly correlated
27 ZNF263 34 180.0 Weakly correlated
28 ZNF394 33 99.0 Weakly correlated
29 ZFP69B 31 99.0 Weakly correlated
30 ZNF28 31 28.9 Weakly correlated
31 ZNF558 31 99.0 Weakly correlated
32 ZNF18 29 160.0 Weakly correlated
33 ZNF75D 27 94.0 Weakly correlated
34 ZNF324 26 99.0 Weakly correlated
35 ZNF519 26 19.6 Highly correlated
36 ZIM3 23 87.0 Weakly correlated
37 ZNF534 23 19.6 Highly correlated
38 ZFP37 22 99.0 Weakly correlated
39 ZNF468 21 28.9 Weakly correlated
40 ZKSCAN1 20 160.0 Weakly correlated
41 ZNF528 20 43.0 Weakly correlated
42 ZNF763 19 15.2 Moderately correlated
43 ZNF334 17 99.0 Weakly correlated
44 ZNF141 16 43.0 Weakly correlated
45 ZNF554 16 99.0 Weakly correlated
46 ZNF589 16 28.9 Weakly correlated
47 ZNF786 15 99.0 Weakly correlated
48 ZNF273 14 28.9 Weakly correlated
49 ZNF641 13 99.0 Weakly correlated
50 ZNF878 13 43.0 Weakly correlated
51 ZKSCAN8 12 160.0 Weakly correlated
52 ZNF175 12 94.0 Weakly correlated
53 ZNF257 12 0.0 Weakly correlated
54 ZNF549 12 87.0 Weakly correlated
55 ZNF92 12 28.9 Weakly correlated
56 ZNF445 10 99.0 Weakly correlated
57 ZNF101 9 43.0 Weakly correlated
58 ZNF224 9 69.0 Weakly correlated
59 ZNF417 9 28.9 Weakly correlated
60 ZNF547 9 74.0 Weakly correlated
61 ZNF563 9 28.9 Weakly correlated
62 ZNF723 9 15.2 Moderately correlated
63 ZNF730 9 19.6 Highly correlated
64 ZNF735 9 28.9 Weakly correlated
65 ZNF777 9 319.0 Weakly correlated
66 ZNF197 8 99.0 Weakly correlated
67 ZNF274 8 99.0 Weakly correlated
68 ZNF282 8 319.0 Weakly correlated
69 ZNF302 8 43.0 Weakly correlated
70 ZNF585B 8 99.0 Weakly correlated
71 ZNF747 8 43.0 Weakly correlated
72 ZNF133 7 99.0 Weakly correlated
73 ZNF343 7 74.0 Weakly correlated
74 ZNF347 7 43.0 Weakly correlated
75 ZNF441 7 43.0 Weakly correlated
76 ZNF674 7 99.0 Weakly correlated
77 ZNF675 7 8.6 Moderately correlated
78 ZNF695 7 28.9 Weakly correlated
79 ZNF707 7 74.0 Weakly correlated
80 ZNF182 6 99.0 Weakly correlated
81 ZNF30 6 94.0 Weakly correlated
82 ZNF429 6 28.9 Weakly correlated
83 ZNF490 6 43.0 Weakly correlated
84 ZNF559 6 74.0 Weakly correlated
85 ZNF584 6 99.0 Weakly correlated
86 ZNF157 5 99.0 Weakly correlated
87 ZNF264 5 99.0 Weakly correlated
88 ZNF333 5 99.0 Weakly correlated
89 ZNF425 5 94.0 Weakly correlated
90 ZNF486 5 8.6 Moderately correlated
91 ZNF573 5 94.0 Weakly correlated
92 ZNF597 5 94.0 Weakly correlated
93 ZNF136 4 74.0 Weakly correlated
94 ZNF140 4 99.0 Weakly correlated
95 ZNF500 4 160.0 Weakly correlated
96 ZNF607 4 43.0 Weakly correlated
97 ZNF611 4 19.6 Highly correlated
98 ZKSCAN5 3 160.0 Weakly correlated
99 ZNF33A 3 99.0 Weakly correlated
100 ZNF41 3 99.0 Weakly correlated
101 ZNF440 3 28.9 Weakly correlated
102 ZNF44 3 43.0 Weakly correlated
103 ZNF530 3 28.9 Weakly correlated
104 ZNF561 3 43.0 Weakly correlated
105 ZNF567 3 99.0 Weakly correlated
106 ZNF57 3 28.9 Weakly correlated
107 ZNF66 3 0.0 Weakly correlated
108 ZNF778 3 74.0 Weakly correlated
109 ZNF845 3 28.9 Weakly correlated
110 ZNF93 3 8.6 Moderately correlated
111 ZKSCAN2 2 180.0 Weakly correlated
112 ZNF100 2 28.9 Weakly correlated
113 ZNF12 2 99.0 Weakly correlated
114 ZNF17 2 69.0 Weakly correlated
115 ZNF418 2 43.0 Weakly correlated
116 ZNF45 2 99.0 Weakly correlated
117 ZNF485 2 94.0 Weakly correlated
118 ZNF510 2 99.0 Weakly correlated
119 ZNF543 2 99.0 Weakly correlated
120 ZNF765 2 8.6 Moderately correlated
121 ZNF792 2 94.0 Weakly correlated
122 ZNF823 2 43.0 Weakly correlated
123 ZNF846 2 74.0 Weakly correlated
124 ZNF84 2 99.0 Weakly correlated
125 ZFP14 1 99.0 Weakly correlated
126 ZNF124 1 43.0 Weakly correlated
127 ZNF132 1 94.0 Weakly correlated
128 ZNF14 1 69.0 Weakly correlated
129 ZNF177 1 94.0 Weakly correlated
130 ZNF184 1 99.0 Weakly correlated
131 ZNF189 1 99.0 Weakly correlated
132 ZNF230 1 28.9 Weakly correlated
133 ZNF234 1 99.0 Weakly correlated
134 ZNF248 1 99.0 Weakly correlated
135 ZNF253 1 19.6 Highly correlated
136 ZNF284 1 43.0 Weakly correlated
137 ZNF304 1 99.0 Weakly correlated
138 ZNF311 1 99.0 Weakly correlated
139 ZNF331 1 94.0 Weakly correlated
140 ZNF419 1 28.9 Weakly correlated
141 ZNF420 1 94.0 Weakly correlated
142 ZNF433 1 43.0 Weakly correlated
143 ZNF473 1 43.0 Weakly correlated
144 ZNF480 1 43.0 Weakly correlated
145 ZNF555 1 94.0 Weakly correlated
146 ZNF562 1 28.9 Weakly correlated
147 ZNF586 1 43.0 Weakly correlated
148 ZNF587B 1 8.6 Moderately correlated
149 ZNF613 1 99.0 Weakly correlated
150 ZNF624 1 99.0 Weakly correlated
151 ZNF626 1 0.0 Weakly correlated
152 ZNF671 1 94.0 Weakly correlated
153 ZNF701 1 28.9 Weakly correlated
154 ZNF705E 1 0.0 Weakly correlated
155 ZNF718 1 19.6 Highly correlated
156 ZNF726 1 28.9 Weakly correlated
157 ZNF75A 1 94.0 Weakly correlated
158 ZNF791 1 87.0 Weakly correlated
159 ZNF81 1 99.0 Weakly correlated
160 ZNF829 1 99.0 Weakly correlated
161 ZNF8 1 99.0 Weakly correlated
162 ZNF90 1 8.6 Moderately correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF479 315 6.4 Moderately correlated
2 ZNF850 174 28.9 Weakly correlated
3 ZNF560 67 43.0 Weakly correlated
4 ZNF793 52 99.0 Weakly correlated
5 ZNF320 35 28.9 Weakly correlated
6 ZFP57 29 87.0 Weakly correlated
7 ZNF317 29 99.0 Weakly correlated
8 ZNF75D 16 94.0 Weakly correlated
9 ZNF28 14 28.9 Weakly correlated
10 ZNF506 12 28.9 Weakly correlated
11 ZNF483 12 99.0 Weakly correlated
12 ZIM3 11 87.0 Weakly correlated
13 ZNF334 10 99.0 Weakly correlated
14 ZNF350 10 99.0 Weakly correlated
15 ZNF263 9 180.0 Weakly correlated
16 ZNF141 9 43.0 Weakly correlated
17 ZNF417 8 28.9 Weakly correlated
18 ZNF705D 8 28.9 Weakly correlated
19 ZNF468 7 28.9 Weakly correlated
20 ZFP69B 6 99.0 Weakly correlated
21 ZNF382 6 99.0 Weakly correlated
22 ZNF18 5 160.0 Weakly correlated
23 ZNF610 5 28.9 Weakly correlated
24 ZNF2 5 99.0 Weakly correlated
25 ZNF429 5 28.9 Weakly correlated
26 ZNF490 4 43.0 Weakly correlated
27 ZNF679 4 28.9 Weakly correlated
28 ZNF101 3 43.0 Weakly correlated
29 ZNF534 3 19.6 Highly correlated
30 ZKSCAN5 3 160.0 Weakly correlated
31 ZNF343 3 74.0 Weakly correlated
32 ZNF333 2 99.0 Weakly correlated
33 ZNF519 2 19.6 Highly correlated
34 ZNF282 2 319.0 Weakly correlated
35 ZNF682 2 28.9 Weakly correlated
36 ZKSCAN1 2 160.0 Weakly correlated
37 ZNF707 2 74.0 Weakly correlated
38 ZNF845 1 28.9 Weakly correlated
39 ZNF792 1 94.0 Weakly correlated
40 ZNF766 1 43.0 Weakly correlated
41 ZNF567 1 99.0 Weakly correlated
42 ZNF100 1 28.9 Weakly correlated
43 ZNF133 1 99.0 Weakly correlated
44 ZNF140 1 99.0 Weakly correlated
45 ZNF440 1 28.9 Weakly correlated
46 ZNF530 1 28.9 Weakly correlated
47 ZNF461 1 99.0 Weakly correlated
48 ZKSCAN8 1 160.0 Weakly correlated
49 ZNF257 1 0.0 Weakly correlated
50 ZNF17 1 69.0 Weakly correlated
51 ZNF189 1 99.0 Weakly correlated
52 ZNF41 1 99.0 Weakly correlated
53 ZNF554 1 99.0 Weakly correlated
54 ZNF735 1 28.9 Weakly correlated
55 ZNF175 1 94.0 Weakly correlated
56 ZNF274 1 99.0 Weakly correlated
57 ZNF680 1 28.9 Weakly correlated
58 ZNF182 1 99.0 Weakly correlated
59 ZNF251 1 94.0 Weakly correlated
60 ZNF433 1 43.0 Weakly correlated
61 ZNF197 1 99.0 Weakly correlated
62 ZNF723 1 15.2 Moderately correlated
63 ZNF558 1 99.0 Weakly correlated
64 ZNF573 1 94.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZFP57 87.0 Weakly correlated
2 ZFP69B 99.0 Weakly correlated
3 ZIM3 87.0 Weakly correlated
4 ZNF141 43.0 Weakly correlated
5 ZNF263 180.0 Weakly correlated
6 ZNF28 28.9 Weakly correlated
7 ZNF317 99.0 Weakly correlated
8 ZNF334 99.0 Weakly correlated
9 ZNF382 99.0 Weakly correlated
10 ZNF483 99.0 Weakly correlated
11 ZNF506 28.9 Weakly correlated
12 ZNF560 43.0 Weakly correlated
13 ZNF75D 94.0 Weakly correlated
14 ZNF793 99.0 Weakly correlated
15 ZNF850 28.9 Weakly correlated