ZRdb KZFP & Repeats
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LTR_LTR12

  • Name
    LTR12
  • Repbase
    LTR12
  • Type
    LTR
  • Emergence
    28.9 Mya
  • Dfam Id
    DF0000399
Description :

LTR12 is a long terminal repeat for the HERV9 endogenous retrovirus(HRES-1/1).
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgagaggtgaagccagctgggcttcctgggtcgggtggggacttggagaacttttctgtctagctaaaggattgtaaacgcaccaatcagcgctctgtgtctagctaaaggnttgtaaacgcaccaatcagcactctgtaaaaacgcaccaatcagcgctctgtgtctagctaaaggnttgtaaacgcaccaatcagcactctgtaaaaacgcaccaatcagcgctctgtgtctagctaaaggnttgtaaacgcaccaatcagcactctgtaaaaacgnaccaatcagcaccgcgntctgtaaaatggaccaatcagcgctctgtaaaatggaccaatcagcaggacgtgggcggggccaaataagggaataaaagctggccacccgagccagcagcggcaacccgctcgggtccccttccacgctgtggaagctttgttctttcgctcttcacaataaatcttgctgctgctcactctttgggtccgcactacctttatgagctgtaacactcaccgcgagggtctgcggcttcactcctgaagtcagcgagaccacgaacccaccgggaggaacaaacaactccggacgcgccacctttaagagctgtaacactcactgcgaaggtctgcggcttcactcctgaagtcagcgagaccacgaacccaccggaaggaagaaactccggacacatctgaacatctgaaggaacaaactccggacacaccatctttaagaactgtaacactcaccgcgagggtccgcggcttcattcttgaagtcagcgagaccaagaacccaccggaaggaaccaattccggacaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF669 45 43.0 Weakly correlated
2 ZNF479 25 6.4 Weakly correlated
3 ZNF382 25 99.0 Weakly correlated
4 ZIM3 20 87.0 Weakly correlated
5 ZFP57 15 87.0 Weakly correlated
6 ZNF793 14 99.0 Weakly correlated
7 ZNF766 8 43.0 Weakly correlated
8 ZNF558 7 99.0 Weakly correlated
9 ZNF506 6 28.9 Highly correlated
10 ZNF28 6 28.9 Highly correlated
11 ZKSCAN1 5 160.0 Weakly correlated
12 ZNF554 5 99.0 Weakly correlated
13 ZNF786 5 99.0 Weakly correlated
14 ZNF263 5 180.0 Weakly correlated
15 ZNF560 4 43.0 Weakly correlated
16 ZNF680 4 28.9 Highly correlated
17 ZNF320 3 28.9 Highly correlated
18 ZFP37 3 99.0 Weakly correlated
19 ZNF587 3 28.9 Highly correlated
20 ZNF610 3 28.9 Highly correlated
21 ZNF197 3 99.0 Weakly correlated
22 ZNF251 3 94.0 Weakly correlated
23 ZNF417 3 28.9 Highly correlated
24 ZNF350 3 99.0 Weakly correlated
25 ZNF2 3 99.0 Weakly correlated
26 ZNF705B 3 28.9 Highly correlated
27 ZNF317 3 99.0 Weakly correlated
28 ZNF679 2 28.9 Highly correlated
29 ZNF671 2 94.0 Weakly correlated
30 ZNF705D 2 28.9 Highly correlated
31 ZNF736 2 43.0 Weakly correlated
32 ZNF595 2 43.0 Weakly correlated
33 ZNF584 2 99.0 Weakly correlated
34 ZNF823 2 43.0 Weakly correlated
35 ZNF92 2 28.9 Highly correlated
36 ZFP69B 2 99.0 Weakly correlated
37 ZKSCAN8 2 160.0 Weakly correlated
38 ZNF133 2 99.0 Weakly correlated
39 ZNF480 2 43.0 Weakly correlated
40 ZNF394 2 99.0 Weakly correlated
41 ZNF347 2 43.0 Weakly correlated
42 ZNF175 2 94.0 Weakly correlated
43 ZNF343 1 74.0 Weakly correlated
44 ZNF879 1 99.0 Weakly correlated
45 ZNF816 1 28.9 Highly correlated
46 ZNF808 1 19.6 Moderately correlated
47 ZNF792 1 94.0 Weakly correlated
48 ZNF141 1 43.0 Weakly correlated
49 ZNF778 1 74.0 Weakly correlated
50 ZNF18 1 160.0 Weakly correlated
51 ZNF723 1 15.2 Moderately correlated
52 ZNF274 1 99.0 Weakly correlated
53 ZNF567 1 99.0 Weakly correlated
54 ZNF701 1 28.9 Highly correlated
55 ZNF445 1 99.0 Weakly correlated
56 ZNF514 1 94.0 Weakly correlated
57 ZNF605 1 99.0 Weakly correlated
58 ZNF597 1 94.0 Weakly correlated
59 ZNF519 1 19.6 Moderately correlated
60 ZNF528 1 43.0 Weakly correlated
61 ZNF585B 1 99.0 Weakly correlated
62 ZNF534 1 19.6 Moderately correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF479 18 6.4 Weakly correlated
2 ZIM3 16 87.0 Weakly correlated
3 ZNF417 3 28.9 Highly correlated
4 ZFP57 3 87.0 Weakly correlated
5 ZNF382 2 99.0 Weakly correlated
6 ZNF317 2 99.0 Weakly correlated
7 ZNF506 2 28.9 Highly correlated
8 ZNF793 2 99.0 Weakly correlated
9 ZNF28 1 28.9 Highly correlated
10 ZNF347 1 43.0 Weakly correlated
11 ZNF141 1 43.0 Weakly correlated
12 ZNF585B 1 99.0 Weakly correlated
13 ZNF736 1 43.0 Weakly correlated
14 ZNF133 1 99.0 Weakly correlated
15 ZNF534 1 19.6 Moderately correlated
16 ZNF705D 1 28.9 Highly correlated
17 ZNF567 1 99.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZIM3 87.0 Weakly correlated