ZRdb KZFP & Repeats
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LTR_LTR10F

  • Name
    LTR10F
  • Repbase
    LTR10F
  • Type
    LTR
  • Emergence
    28.9 Mya
  • Dfam Id
    DF0000397
Description :

LTR10F is a long terminal repeat of the HERVIP10F endogenous retrovirus.Its very close subfamily flanks also the HERVIP10FH non-autonomousretrovirus.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgttagatatgagttctaaatttctcttcaaagaatcaatatgtcagtatgttcaattctttgccttctacttttaaacttaacttcctcgtaaagcaacctttttcgattacctgctccaccctgactcattccgattacctgctccaccctgactcattccgattacctgccacctgctccgccctgactcattcattctccgccctgcataaccatttttnnnncccgccaaaccactcaccccgtcactctctttaaattagccaatcggaattagtttagcctgtgcggtctaaccctagccaataggggaacgacacagcagcaggggccacgtgcgtcagggataagaaccccttcccctcccttgtccaagtgtgcgctcaccattgctccatctgtaagggcgcacccttctatagaagtancttgccttgctgagaattaaaaagaaaattttatattcgagtgctatttcttttgcggcaccgaaactttatntataaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 94 99.0 Weakly correlated
2 ZNF671 46 94.0 Weakly correlated
3 ZNF506 42 28.9 Highly correlated
4 ZNF264 34 99.0 Weakly correlated
5 ZFP37 23 99.0 Weakly correlated
6 ZNF324 23 99.0 Weakly correlated
7 ZNF562 23 28.9 Highly correlated
8 ZFP57 20 87.0 Weakly correlated
9 ZNF394 17 99.0 Weakly correlated
10 ZNF658 16 99.0 Weakly correlated
11 ZNF792 16 94.0 Weakly correlated
12 ZNF680 15 28.9 Highly correlated
13 ZNF140 14 99.0 Weakly correlated
14 ZNF175 14 94.0 Weakly correlated
15 ZNF589 13 28.9 Highly correlated
16 ZNF141 12 43.0 Weakly correlated
17 ZNF558 12 99.0 Weakly correlated
18 ZNF8 12 99.0 Weakly correlated
19 ZNF585B 11 99.0 Weakly correlated
20 ZFP69B 10 99.0 Weakly correlated
21 ZNF547 10 74.0 Weakly correlated
22 ZNF766 9 43.0 Weakly correlated
23 ZKSCAN8 8 160.0 Weakly correlated
24 ZNF2 8 99.0 Weakly correlated
25 ZNF675 8 8.6 Weakly correlated
26 ZNF554 7 99.0 Weakly correlated
27 ZKSCAN1 6 160.0 Weakly correlated
28 ZNF354C 6 99.0 Weakly correlated
29 ZNF707 6 74.0 Weakly correlated
30 ZNF18 5 160.0 Weakly correlated
31 ZNF202 5 160.0 Weakly correlated
32 ZNF486 5 8.6 Weakly correlated
33 ZNF584 5 99.0 Weakly correlated
34 ZNF723 5 15.2 Moderately correlated
35 ZNF101 4 43.0 Weakly correlated
36 ZNF197 4 99.0 Weakly correlated
37 ZNF251 4 94.0 Weakly correlated
38 ZNF263 4 180.0 Weakly correlated
39 ZNF274 4 99.0 Weakly correlated
40 ZNF334 4 99.0 Weakly correlated
41 ZNF544 4 0.0 Weakly correlated
42 ZNF597 4 94.0 Weakly correlated
43 ZNF705B 4 28.9 Highly correlated
44 ZFP30 3 99.0 Weakly correlated
45 ZKSCAN3 3 99.0 Weakly correlated
46 ZKSCAN4 3 99.0 Weakly correlated
47 ZNF14 3 69.0 Weakly correlated
48 ZNF160 3 74.0 Weakly correlated
49 ZNF195 3 28.9 Highly correlated
50 ZNF221 3 74.0 Weakly correlated
51 ZNF253 3 19.6 Moderately correlated
52 ZNF268 3 94.0 Weakly correlated
53 ZNF347 3 43.0 Weakly correlated
54 ZNF416 3 43.0 Weakly correlated
55 ZNF426 3 87.0 Weakly correlated
56 ZNF443 3 19.6 Moderately correlated
57 ZNF446 3 94.0 Weakly correlated
58 ZNF468 3 28.9 Highly correlated
59 ZNF473 3 43.0 Weakly correlated
60 ZNF480 3 43.0 Weakly correlated
61 ZNF487 3 28.9 Highly correlated
62 ZNF500 3 160.0 Weakly correlated
63 ZNF510 3 99.0 Weakly correlated
64 ZNF514 3 94.0 Weakly correlated
65 ZNF519 3 19.6 Moderately correlated
66 ZNF559 3 74.0 Weakly correlated
67 ZNF560 3 43.0 Weakly correlated
68 ZNF568 3 99.0 Weakly correlated
69 ZNF578 3 15.2 Moderately correlated
70 ZNF583 3 99.0 Weakly correlated
71 ZNF607 3 43.0 Weakly correlated
72 ZNF611 3 19.6 Moderately correlated
73 ZNF641 3 99.0 Weakly correlated
74 ZNF682 3 28.9 Highly correlated
75 ZNF689 3 99.0 Weakly correlated
76 ZNF705D 3 28.9 Highly correlated
77 ZNF705E 3 0.0 Weakly correlated
78 ZNF716 3 19.6 Moderately correlated
79 ZNF717 3 0.0 Weakly correlated
80 ZNF726 3 28.9 Highly correlated
81 ZNF75D 3 94.0 Weakly correlated
82 ZNF761 3 19.6 Moderately correlated
83 ZNF763 3 15.2 Moderately correlated
84 ZNF772 3 94.0 Weakly correlated
85 ZNF77 3 87.0 Weakly correlated
86 ZNF814 3 0.0 Weakly correlated
87 ZNF845 3 28.9 Highly correlated
88 ZNF850 3 28.9 Highly correlated
89 ZNF878 3 43.0 Weakly correlated
90 ZNF891 3 99.0 Weakly correlated
91 ZNF90 3 8.6 Weakly correlated
92 PRDM9 2 0.0 Weakly correlated
93 ZKSCAN2 2 180.0 Weakly correlated
94 ZNF100 2 28.9 Highly correlated
95 ZNF12 2 99.0 Weakly correlated
96 ZNF169 2 94.0 Weakly correlated
97 ZNF177 2 94.0 Weakly correlated
98 ZNF180 2 99.0 Weakly correlated
99 ZNF181 2 94.0 Weakly correlated
100 ZNF189 2 99.0 Weakly correlated
101 ZNF211 2 94.0 Weakly correlated
102 ZNF222 2 43.0 Weakly correlated
103 ZNF223 2 43.0 Weakly correlated
104 ZNF229 2 99.0 Weakly correlated
105 ZNF234 2 99.0 Weakly correlated
106 ZNF248 2 99.0 Weakly correlated
107 ZNF257 2 0.0 Weakly correlated
108 ZNF25 2 99.0 Weakly correlated
109 ZNF273 2 28.9 Highly correlated
110 ZNF282 2 319.0 Weakly correlated
111 ZNF284 2 43.0 Weakly correlated
112 ZNF317 2 99.0 Weakly correlated
113 ZNF320 2 28.9 Highly correlated
114 ZNF333 2 99.0 Weakly correlated
115 ZNF350 2 99.0 Weakly correlated
116 ZNF418 2 43.0 Weakly correlated
117 ZNF430 2 19.6 Moderately correlated
118 ZNF431 2 28.9 Highly correlated
119 ZNF432 2 99.0 Weakly correlated
120 ZNF439 2 8.6 Weakly correlated
121 ZNF441 2 43.0 Weakly correlated
122 ZNF454 2 99.0 Weakly correlated
123 ZNF485 2 94.0 Weakly correlated
124 ZNF527 2 99.0 Weakly correlated
125 ZNF548 2 94.0 Weakly correlated
126 ZNF550 2 94.0 Weakly correlated
127 ZNF555 2 94.0 Weakly correlated
128 ZNF561 2 43.0 Weakly correlated
129 ZNF565 2 99.0 Weakly correlated
130 ZNF567 2 99.0 Weakly correlated
131 ZNF569 2 99.0 Weakly correlated
132 ZNF573 2 94.0 Weakly correlated
133 ZNF582 2 99.0 Weakly correlated
134 ZNF587 2 28.9 Highly correlated
135 ZNF605 2 99.0 Weakly correlated
136 ZNF610 2 28.9 Highly correlated
137 ZNF615 2 99.0 Weakly correlated
138 ZNF616 2 43.0 Weakly correlated
139 ZNF627 2 74.0 Weakly correlated
140 ZNF667 2 99.0 Weakly correlated
141 ZNF695 2 28.9 Highly correlated
142 ZNF699 2 99.0 Weakly correlated
143 ZNF69 2 28.9 Highly correlated
144 ZNF728 2 19.6 Moderately correlated
145 ZNF730 2 19.6 Moderately correlated
146 ZNF747 2 43.0 Weakly correlated
147 ZNF765 2 8.6 Weakly correlated
148 ZNF777 2 319.0 Weakly correlated
149 ZNF780A 2 43.0 Weakly correlated
150 ZNF785 2 94.0 Weakly correlated
151 ZNF786 2 99.0 Weakly correlated
152 ZNF790 2 99.0 Weakly correlated
153 ZNF793 2 99.0 Weakly correlated
154 ZNF816 2 28.9 Highly correlated
155 ZNF846 2 74.0 Weakly correlated
156 ZNF84 2 99.0 Weakly correlated
157 ZNF85 2 28.9 Highly correlated
158 ZNF880 2 28.9 Highly correlated
159 ZFP90 1 99.0 Weakly correlated
160 ZIM3 1 87.0 Weakly correlated
161 ZNF26 1 99.0 Weakly correlated
162 ZNF304 1 99.0 Weakly correlated
163 ZNF442 1 43.0 Weakly correlated
164 ZNF479 1 6.4 Weakly correlated
165 ZNF483 1 99.0 Weakly correlated
166 ZNF484 1 99.0 Weakly correlated
167 ZNF528 1 43.0 Weakly correlated
168 ZNF530 1 28.9 Highly correlated
169 ZNF534 1 19.6 Moderately correlated
170 ZNF549 1 87.0 Weakly correlated
171 ZNF679 1 28.9 Highly correlated
172 ZNF749 1 28.9 Highly correlated
173 ZNF778 1 74.0 Weakly correlated
174 ZNF791 1 87.0 Weakly correlated
175 ZNF7 1 99.0 Weakly correlated
176 ZNF808 1 19.6 Moderately correlated
177 ZNF823 1 43.0 Weakly correlated
178 ZNF879 1 99.0 Weakly correlated
179 ZNF93 1 8.6 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF671 31 94.0 Weakly correlated
2 ZNF562 21 28.9 Highly correlated
3 ZFP37 16 99.0 Weakly correlated
4 ZFP57 8 87.0 Weakly correlated
5 ZNF554 7 99.0 Weakly correlated
6 ZNF382 5 99.0 Weakly correlated
7 ZNF585B 4 99.0 Weakly correlated
8 ZNF675 3 8.6 Weakly correlated
9 ZNF658 3 99.0 Weakly correlated
10 ZNF347 3 43.0 Weakly correlated
11 ZNF561 2 43.0 Weakly correlated
12 PRDM9 2 0.0 Weakly correlated
13 ZNF582 1 99.0 Weakly correlated
14 ZNF350 1 99.0 Weakly correlated
15 ZNF506 1 28.9 Highly correlated
16 ZNF468 1 28.9 Highly correlated
17 ZNF263 1 180.0 Weakly correlated
18 ZNF141 1 43.0 Weakly correlated
19 ZIM3 1 87.0 Weakly correlated
20 ZNF723 1 15.2 Moderately correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZFP37 99.0 Weakly correlated
2 ZNF554 99.0 Weakly correlated
3 ZNF562 28.9 Highly correlated