ZRdb KZFP & Repeats
...

LTR_LTR10E

  • Name
    LTR10E
  • Repbase
    LTR10E
  • Type
    LTR
  • Emergence
    28.9 Mya
  • Dfam Id
    DF0000396
Description :

LTR10E is a long terminal repeat associated with HERVI.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgtagaaagtaaaaagtttcctcttcaaagtttcccttcttgttaaagaataaatcataagtgttagaaataatagtttcttttaaagactaacttccttcaagcctccttgctttgtgctaataactctttgttaagccctatcctatgtagctgttagacatagggaataagtacattctatgtccttgtactttaaccaagatatttgtgctggacgtgctcacaggcacgtcccagctcgcagcctatgccccttccttatttggaaatgttattgcttctctaagtcctttcgtaagcaacttcctcttttcctttgttctcccttgcntttacctatttaggaaagttttaagttattagccaatcgggtntcagtttagattgtgaggtccggctccagccaatggagacaggacacagcagcaaggacaaactgcgtaagggataaanattgcttccctcctttgttcaggtgtgctctcgccattgttccatctgcgangagcaccctttctgcagaaagtaaagattgccttgctgagagaactttttgtctgagtgctgacttttctttgcggcaccgaggaacaagcattctgtttctaaataaacattttacttataaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
...
Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF561 70 43.0 Weakly correlated
2 ZNF562 40 28.9 Highly correlated
3 ZNF382 34 99.0 Weakly correlated
4 ZNF680 24 28.9 Highly correlated
5 ZNF766 19 43.0 Weakly correlated
6 ZNF394 16 99.0 Weakly correlated
7 ZNF18 8 160.0 Weakly correlated
8 ZNF251 8 94.0 Weakly correlated
9 ZFP69B 7 99.0 Weakly correlated
10 ZNF589 7 28.9 Highly correlated
11 ZNF558 7 99.0 Weakly correlated
12 ZNF140 7 99.0 Weakly correlated
13 ZNF197 6 99.0 Weakly correlated
14 ZFP57 5 87.0 Weakly correlated
15 ZFP37 5 99.0 Weakly correlated
16 ZKSCAN8 5 160.0 Weakly correlated
17 ZNF101 5 43.0 Weakly correlated
18 ZNF175 5 94.0 Weakly correlated
19 ZNF263 4 180.0 Weakly correlated
20 ZNF584 4 99.0 Weakly correlated
21 ZNF133 3 99.0 Weakly correlated
22 ZNF124 3 43.0 Weakly correlated
23 ZNF506 3 28.9 Highly correlated
24 ZNF93 2 8.6 Weakly correlated
25 ZIM3 2 87.0 Weakly correlated
26 ZNF554 2 99.0 Weakly correlated
27 ZNF528 2 43.0 Weakly correlated
28 ZNF486 2 8.6 Weakly correlated
29 ZNF468 2 28.9 Highly correlated
30 ZNF317 2 99.0 Weakly correlated
31 ZNF28 2 28.9 Highly correlated
32 ZNF257 2 0.0 Weakly correlated
33 ZNF479 1 6.4 Weakly correlated
34 ZNF519 1 19.6 Moderately correlated
35 ZNF441 1 43.0 Weakly correlated
36 ZNF440 1 28.9 Highly correlated
37 ZNF557 1 15.2 Moderately correlated
38 ZNF425 1 94.0 Weakly correlated
39 ZNF350 1 99.0 Weakly correlated
40 ZNF324 1 99.0 Weakly correlated
41 ZNF585B 1 99.0 Weakly correlated
42 ZKSCAN1 1 160.0 Weakly correlated
43 ZNF92 1 28.9 Highly correlated
44 ZNF253 1 19.6 Moderately correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF561 69 43.0 Weakly correlated
2 ZNF562 38 28.9 Highly correlated
3 ZNF680 10 28.9 Highly correlated
4 ZNF101 4 43.0 Weakly correlated
5 ZFP57 3 87.0 Weakly correlated
6 ZNF257 2 0.0 Weakly correlated
7 ZNF468 2 28.9 Highly correlated
8 ZNF589 2 28.9 Highly correlated
9 ZNF766 2 43.0 Weakly correlated
10 ZNF584 1 99.0 Weakly correlated
11 ZNF350 1 99.0 Weakly correlated
12 ZNF197 1 99.0 Weakly correlated
13 ZNF263 1 180.0 Weakly correlated
14 ZNF382 1 99.0 Weakly correlated
15 ZNF175 1 94.0 Weakly correlated
16 ZNF124 1 43.0 Weakly correlated
17 ZIM3 1 87.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF562 28.9 Highly correlated
2 ZNF680 28.9 Highly correlated