ZRdb KZFP & Repeats
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LTR_LTR10D

  • Name
    LTR10D
  • Repbase
    LTR10D
  • Type
    LTR
  • Emergence
    28.9 Mya
  • Dfam Id
    DF0000395
Description :

LTR10D is a long terminal repeat associated with HERVI.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgtgggatatgatgaggtttctcttcaaataacctgatcaatcttttattctttaattcatagtacccccccccccccttttttcctttttctccttttttcctttttgcctttgttagatgcccaggcacgccacagtaccaggcgttatcagtaccagctcacattcctttccttatttggaaagaggactaactttctagctcattacagacaccccttcccctttcctctccgctttcttttacgtgcccaccttatctaaaaaaaantcaaatgtttagccaaccgggattagtttagattgtacgacccgaccccggccaatggggaaagggtacaggggcaggacttgcgtcaggaataaaggctctcgtgcccctttgttcaggtgtgctctcatggcgactggccaaggagnngcacccctctgcgcagaagtaaaattgctttgctaagaatcctttgttcgagtgttcaatttccttaggattttgagcgttattcctaaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 29 99.0 Weakly correlated
2 ZNF766 14 43.0 Weakly correlated
3 ZNF175 8 94.0 Weakly correlated
4 ZNF394 7 99.0 Weakly correlated
5 ZNF28 6 28.9 Highly correlated
6 ZFP37 5 99.0 Weakly correlated
7 ZNF589 4 28.9 Highly correlated
8 ZNF2 4 99.0 Weakly correlated
9 ZNF584 4 99.0 Weakly correlated
10 ZNF534 4 19.6 Moderately correlated
11 ZKSCAN8 3 160.0 Weakly correlated
12 ZNF18 3 160.0 Weakly correlated
13 ZNF705D 3 28.9 Highly correlated
14 ZNF30 3 94.0 Weakly correlated
15 ZNF157 2 99.0 Weakly correlated
16 ZNF8 2 99.0 Weakly correlated
17 ZNF778 2 74.0 Weakly correlated
18 ZNF705B 2 28.9 Highly correlated
19 ZNF558 2 99.0 Weakly correlated
20 ZNF554 2 99.0 Weakly correlated
21 ZKSCAN1 2 160.0 Weakly correlated
22 ZNF101 2 43.0 Weakly correlated
23 ZNF263 2 180.0 Weakly correlated
24 ZNF317 2 99.0 Weakly correlated
25 ZNF347 1 43.0 Weakly correlated
26 ZNF320 1 28.9 Highly correlated
27 ZNF561 1 43.0 Weakly correlated
28 ZIM3 1 87.0 Weakly correlated
29 ZNF585A 1 99.0 Weakly correlated
30 ZFP69B 1 99.0 Weakly correlated
31 ZNF610 1 28.9 Highly correlated
32 ZNF701 1 28.9 Highly correlated
33 ZNF510 1 99.0 Weakly correlated
34 ZNF197 1 99.0 Weakly correlated
35 ZNF75D 1 94.0 Weakly correlated
36 ZFP30 1 99.0 Weakly correlated
37 ZNF181 1 94.0 Weakly correlated
38 ZNF823 1 43.0 Weakly correlated
39 ZNF417 1 28.9 Highly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF28 6 28.9 Highly correlated
2 ZNF766 3 43.0 Weakly correlated
3 ZNF534 3 19.6 Moderately correlated
4 ZNF175 3 94.0 Weakly correlated
5 ZNF589 2 28.9 Highly correlated
6 ZIM3 1 87.0 Weakly correlated
7 ZNF610 1 28.9 Highly correlated
8 ZNF101 1 43.0 Weakly correlated
9 ZNF705B 1 28.9 Highly correlated
10 ZNF705D 1 28.9 Highly correlated
11 ZNF382 1 99.0 Weakly correlated
12 ZNF584 1 99.0 Weakly correlated
13 ZNF585A 1 99.0 Weakly correlated
14 ZNF417 1 28.9 Highly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats