ZRdb KZFP & Repeats
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LTR_LTR10C

  • Name
    LTR10C
  • Repbase
    LTR10C
  • Type
    LTR
  • Emergence
    28.9 Mya
  • Dfam Id
    DF0000394
Description :

LTR10C is a long terminal repeat that appears to be associated withHERVI.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgtaaaaagtaaagtagaggttcctcttcaaagactttcctccccgtctaattaggaataaatagtaacttctcttagaagcaaaatttattcaaagacctgtgctaacattcttaaatatctgctagccgtaataaagaaatcaatgtactttatgttcttagctcccacaatttagcctaaatatttgccctggcatgcttatactggtccaagcaagcattaggtcatagcctgttcctcttccttatttgaaggtgtttttacctttctcagcattccacaagttacttcctccttcctttgttctcctctgcctttgcctcttttaaaaagttctaagttgctagccaatcgggacaaatacagaatgtgaggtcccgttccagccaatggaaaccggacacagcagtagggtggacgcgtcaggttataaatgaccctgtctcctttgttcggtgtactctcgtggcaaaactgctggcgagtgtaccctttctgcagaaagtanaaaaatggccttgctgaggaaattaaatttatgttcaagtgctatttctttacggcaccggggaacaagcatttcaaaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF561 97 43.0 Weakly correlated
2 ZNF382 18 99.0 Weakly correlated
3 ZNF394 15 99.0 Weakly correlated
4 ZNF766 14 43.0 Weakly correlated
5 ZFP37 12 99.0 Weakly correlated
6 ZNF350 12 99.0 Weakly correlated
7 ZNF680 9 28.9 Highly correlated
8 ZNF589 9 28.9 Highly correlated
9 ZNF263 9 180.0 Weakly correlated
10 ZNF175 7 94.0 Weakly correlated
11 ZNF562 7 28.9 Highly correlated
12 ZNF626 7 0.0 Weakly correlated
13 ZNF584 6 99.0 Weakly correlated
14 ZKSCAN8 6 160.0 Weakly correlated
15 ZNF558 5 99.0 Weakly correlated
16 ZNF18 5 160.0 Weakly correlated
17 ZNF197 4 99.0 Weakly correlated
18 ZFP57 4 87.0 Weakly correlated
19 ZNF101 3 43.0 Weakly correlated
20 ZFP69B 3 99.0 Weakly correlated
21 ZNF705B 3 28.9 Highly correlated
22 ZNF641 2 99.0 Weakly correlated
23 ZNF723 2 15.2 Moderately correlated
24 ZNF92 2 28.9 Highly correlated
25 ZNF610 2 28.9 Highly correlated
26 ZNF585B 2 99.0 Weakly correlated
27 ZNF792 2 94.0 Weakly correlated
28 ZNF585A 2 99.0 Weakly correlated
29 ZNF705D 2 28.9 Highly correlated
30 ZNF479 2 6.4 Weakly correlated
31 ZIM3 2 87.0 Weakly correlated
32 ZKSCAN1 2 160.0 Weakly correlated
33 ZNF324 2 99.0 Weakly correlated
34 ZNF317 2 99.0 Weakly correlated
35 ZNF2 2 99.0 Weakly correlated
36 ZNF136 2 74.0 Weakly correlated
37 ZNF257 1 0.0 Weakly correlated
38 ZFP30 1 99.0 Weakly correlated
39 ZNF91 1 6.0 Weakly correlated
40 ZNF786 1 99.0 Weakly correlated
41 ZNF75D 1 94.0 Weakly correlated
42 ZNF140 1 99.0 Weakly correlated
43 ZNF189 1 99.0 Weakly correlated
44 ZNF251 1 94.0 Weakly correlated
45 ZNF674 1 99.0 Weakly correlated
46 ZNF554 1 99.0 Weakly correlated
47 ZNF587 1 28.9 Highly correlated
48 ZNF347 1 43.0 Weakly correlated
49 ZNF417 1 28.9 Highly correlated
50 ZNF441 1 43.0 Weakly correlated
51 ZNF486 1 8.6 Weakly correlated
52 ZNF506 1 28.9 Highly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF561 94 43.0 Weakly correlated
2 ZNF350 7 99.0 Weakly correlated
3 ZNF562 6 28.9 Highly correlated
4 ZNF101 3 43.0 Weakly correlated
5 ZNF558 3 99.0 Weakly correlated
6 ZIM3 1 87.0 Weakly correlated
7 ZNF674 1 99.0 Weakly correlated
8 ZNF257 1 0.0 Weakly correlated
9 ZNF417 1 28.9 Highly correlated
10 ZNF92 1 28.9 Highly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF561 43.0 Weakly correlated
2 ZNF562 28.9 Highly correlated