ZRdb KZFP & Repeats
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LTR_LTR10B2

  • Name
    LTR10B2
  • Repbase
    LTR10B2
  • Type
    LTR
  • Emergence
    28.9 Mya
  • Dfam Id
    DF0000393
Description :

Copies present at orthologous sites in rhesus and baboon, preciselyabsent from marmoset.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgttagatacagctaggttccctcttcaaacagcttatccagtttccccgttctttattctataattccaagtacccccttcccccctttgctgcgccccaacttgtctgaatatgcctaggcatgcctgaacttgctacagccccagtccacattcctttccttattngggaataggttagctttctagtcccccgtaggtgaccccctttctctctcttctctcctccatcacgcgtctaccctatctgggaaagtttaagtgcttagccaatcgggattagcttagattgtgcggtccaaccccagccaataggggaaggacacagaagcaggagctgcgttagggataataaaaacccctnctctcctttgttcggtgtgctcttgcgatcgcgacagacgcgagcagcacccttctgcagaagtaaatttgccttgctgagaaatcttttgtctnagtgctggtttttctttgcggcaccgagcacttgtttccaaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF562 32 28.9 Highly correlated
2 ZNF382 15 99.0 Weakly correlated
3 ZNF680 12 28.9 Highly correlated
4 ZNF506 9 28.9 Highly correlated
5 ZNF561 6 43.0 Weakly correlated
6 ZNF766 6 43.0 Weakly correlated
7 ZNF394 5 99.0 Weakly correlated
8 ZNF175 5 94.0 Weakly correlated
9 ZNF18 5 160.0 Weakly correlated
10 ZNF251 5 94.0 Weakly correlated
11 ZFP57 4 87.0 Weakly correlated
12 ZNF554 4 99.0 Weakly correlated
13 ZNF263 3 180.0 Weakly correlated
14 ZIM3 3 87.0 Weakly correlated
15 ZNF350 3 99.0 Weakly correlated
16 ZNF610 3 28.9 Highly correlated
17 ZNF705B 2 28.9 Highly correlated
18 ZFP37 2 99.0 Weakly correlated
19 ZNF558 2 99.0 Weakly correlated
20 ZNF589 2 28.9 Highly correlated
21 ZKSCAN5 2 160.0 Weakly correlated
22 ZNF486 2 8.6 Weakly correlated
23 ZKSCAN8 2 160.0 Weakly correlated
24 ZNF257 2 0.0 Weakly correlated
25 ZNF141 2 43.0 Weakly correlated
26 ZNF320 2 28.9 Highly correlated
27 ZNF28 2 28.9 Highly correlated
28 ZNF793 2 99.0 Weakly correlated
29 ZNF92 1 28.9 Highly correlated
30 ZNF723 1 15.2 Moderately correlated
31 ZNF584 1 99.0 Weakly correlated
32 ZNF765 1 8.6 Weakly correlated
33 ZNF93 1 8.6 Weakly correlated
34 ZNF563 1 28.9 Highly correlated
35 ZNF534 1 19.6 Moderately correlated
36 ZNF528 1 43.0 Weakly correlated
37 ZNF479 1 6.4 Weakly correlated
38 ZNF44 1 43.0 Weakly correlated
39 ZNF440 1 28.9 Highly correlated
40 ZNF317 1 99.0 Weakly correlated
41 ZNF2 1 99.0 Weakly correlated
42 ZNF264 1 99.0 Weakly correlated
43 ZNF197 1 99.0 Weakly correlated
44 ZNF133 1 99.0 Weakly correlated
45 ZFP69B 1 99.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF562 27 28.9 Highly correlated
2 ZNF561 6 43.0 Weakly correlated
3 ZNF680 4 28.9 Highly correlated
4 ZIM3 3 87.0 Weakly correlated
5 ZFP57 2 87.0 Weakly correlated
6 ZKSCAN5 1 160.0 Weakly correlated
7 ZNF141 1 43.0 Weakly correlated
8 ZNF350 1 99.0 Weakly correlated
9 ZNF44 1 43.0 Weakly correlated
10 ZNF257 1 0.0 Weakly correlated
11 ZNF263 1 180.0 Weakly correlated
12 ZNF320 1 28.9 Highly correlated
13 ZNF440 1 28.9 Highly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF562 28.9 Highly correlated