ZRdb KZFP & Repeats
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LTR_LTR10B1

  • Name
    LTR10B1
  • Repbase
    LTR10B1
  • Type
    LTR
  • Emergence
    28.9 Mya
  • Dfam Id
    DF0000392
Description :

LTR10B1 is a long terminal repeat associated with HERVI.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgtcggatacagtaagttcctcttcaaaggtttagcttgttnaacttccttgttctttgttctcaagaccaacttccttgtaccttcttgcccctagctacctgctctgtaaacaacttctcccgccagtcccaatctgtaactcacatctcttccttatttggaaagagtcctctttactcctggctacccgttctgtaaacaaccctccttcccgcctttgccgcgccctgacatgcccagacatgccttgtaccgtaacggacagcctctcccttcccgcctagttagccntattcaattttaaacagtagccaatcgggtcagcttagattgtgcggtccgactccagccaatggggaaaggacacagaagcagggactaactgcgttagggataaaaaccccttccctcctttgttcggtgtgctctcgcagcggccagaagcgcgagcagcacccttctgcagaagtaaatttgccttgctgagaaatcttttgtttgagtgctcgttnttctttgcgacnccgagctcttgtttctaaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF562 45 28.9 Highly correlated
2 ZNF680 19 28.9 Highly correlated
3 ZNF382 18 99.0 Weakly correlated
4 ZNF506 13 28.9 Highly correlated
5 ZFP57 12 87.0 Weakly correlated
6 ZNF18 9 160.0 Weakly correlated
7 ZNF274 9 99.0 Weakly correlated
8 ZNF263 8 180.0 Weakly correlated
9 ZNF561 6 43.0 Weakly correlated
10 ZNF257 5 0.0 Weakly correlated
11 ZNF589 5 28.9 Highly correlated
12 ZNF766 5 43.0 Weakly correlated
13 ZNF251 4 94.0 Weakly correlated
14 ZNF41 4 99.0 Weakly correlated
15 ZKSCAN8 3 160.0 Weakly correlated
16 ZNF133 3 99.0 Weakly correlated
17 ZNF320 3 28.9 Highly correlated
18 ZNF33A 3 99.0 Weakly correlated
19 ZNF394 3 99.0 Weakly correlated
20 ZNF483 3 99.0 Weakly correlated
21 ZNF560 3 43.0 Weakly correlated
22 ZNF57 3 28.9 Highly correlated
23 ZNF610 3 28.9 Highly correlated
24 ZNF793 3 99.0 Weakly correlated
25 ZNF140 2 99.0 Weakly correlated
26 ZNF141 2 43.0 Weakly correlated
27 ZNF14 2 69.0 Weakly correlated
28 ZNF160 2 74.0 Weakly correlated
29 ZNF202 2 160.0 Weakly correlated
30 ZNF2 2 99.0 Weakly correlated
31 ZNF347 2 43.0 Weakly correlated
32 ZNF350 2 99.0 Weakly correlated
33 ZNF44 2 43.0 Weakly correlated
34 ZNF479 2 6.4 Weakly correlated
35 ZNF514 2 94.0 Weakly correlated
36 ZNF534 2 19.6 Moderately correlated
37 ZNF584 2 99.0 Weakly correlated
38 ZNF705B 2 28.9 Highly correlated
39 ZNF705D 2 28.9 Highly correlated
40 ZNF735 2 28.9 Highly correlated
41 ZFP30 1 99.0 Weakly correlated
42 ZFP69 1 99.0 Weakly correlated
43 ZFP92 1 99.0 Weakly correlated
44 ZIM3 1 87.0 Weakly correlated
45 ZKSCAN1 1 160.0 Weakly correlated
46 ZKSCAN4 1 99.0 Weakly correlated
47 ZKSCAN5 1 160.0 Weakly correlated
48 ZNF101 1 43.0 Weakly correlated
49 ZNF114 1 28.9 Highly correlated
50 ZNF12 1 99.0 Weakly correlated
51 ZNF175 1 94.0 Weakly correlated
52 ZNF177 1 94.0 Weakly correlated
53 ZNF195 1 28.9 Highly correlated
54 ZNF197 1 99.0 Weakly correlated
55 ZNF221 1 74.0 Weakly correlated
56 ZNF226 1 99.0 Weakly correlated
57 ZNF230 1 28.9 Highly correlated
58 ZNF233 1 99.0 Weakly correlated
59 ZNF234 1 99.0 Weakly correlated
60 ZNF253 1 19.6 Moderately correlated
61 ZNF268 1 94.0 Weakly correlated
62 ZNF282 1 319.0 Weakly correlated
63 ZNF286A 1 160.0 Weakly correlated
64 ZNF317 1 99.0 Weakly correlated
65 ZNF416 1 43.0 Weakly correlated
66 ZNF417 1 28.9 Highly correlated
67 ZNF420 1 94.0 Weakly correlated
68 ZNF43 1 43.0 Weakly correlated
69 ZNF443 1 19.6 Moderately correlated
70 ZNF446 1 94.0 Weakly correlated
71 ZNF461 1 99.0 Weakly correlated
72 ZNF471 1 94.0 Weakly correlated
73 ZNF473 1 43.0 Weakly correlated
74 ZNF487 1 28.9 Highly correlated
75 ZNF490 1 43.0 Weakly correlated
76 ZNF500 1 160.0 Weakly correlated
77 ZNF510 1 99.0 Weakly correlated
78 ZNF519 1 19.6 Moderately correlated
79 ZNF528 1 43.0 Weakly correlated
80 ZNF544 1 0.0 Weakly correlated
81 ZNF549 1 87.0 Weakly correlated
82 ZNF551 1 94.0 Weakly correlated
83 ZNF556 1 94.0 Weakly correlated
84 ZNF559 1 74.0 Weakly correlated
85 ZNF568 1 99.0 Weakly correlated
86 ZNF569 1 99.0 Weakly correlated
87 ZNF573 1 94.0 Weakly correlated
88 ZNF578 1 15.2 Moderately correlated
89 ZNF583 1 99.0 Weakly correlated
90 ZNF587B 1 8.6 Weakly correlated
91 ZNF587 1 28.9 Highly correlated
92 ZNF596 1 94.0 Weakly correlated
93 ZNF597 1 94.0 Weakly correlated
94 ZNF607 1 43.0 Weakly correlated
95 ZNF624 1 99.0 Weakly correlated
96 ZNF630 1 94.0 Weakly correlated
97 ZNF658 1 99.0 Weakly correlated
98 ZNF66 1 0.0 Weakly correlated
99 ZNF677 1 99.0 Weakly correlated
100 ZNF679 1 28.9 Highly correlated
101 ZNF688 1 160.0 Weakly correlated
102 ZNF689 1 99.0 Weakly correlated
103 ZNF699 1 99.0 Weakly correlated
104 ZNF700 1 28.9 Highly correlated
105 ZNF701 1 28.9 Highly correlated
106 ZNF705E 1 0.0 Weakly correlated
107 ZNF709 1 87.0 Weakly correlated
108 ZNF717 1 0.0 Weakly correlated
109 ZNF718 1 19.6 Moderately correlated
110 ZNF723 1 15.2 Moderately correlated
111 ZNF726 1 28.9 Highly correlated
112 ZNF727 1 19.6 Moderately correlated
113 ZNF728 1 19.6 Moderately correlated
114 ZNF729 1 8.6 Weakly correlated
115 ZNF730 1 19.6 Moderately correlated
116 ZNF747 1 43.0 Weakly correlated
117 ZNF763 1 15.2 Moderately correlated
118 ZNF772 1 94.0 Weakly correlated
119 ZNF778 1 74.0 Weakly correlated
120 ZNF77 1 87.0 Weakly correlated
121 ZNF786 1 99.0 Weakly correlated
122 ZNF813 1 28.9 Highly correlated
123 ZNF814 1 0.0 Weakly correlated
124 ZNF829 1 99.0 Weakly correlated
125 ZNF836 1 43.0 Weakly correlated
126 ZNF845 1 28.9 Highly correlated
127 ZNF846 1 74.0 Weakly correlated
128 ZNF850 1 28.9 Highly correlated
129 ZNF852 1 94.0 Weakly correlated
130 ZNF878 1 43.0 Weakly correlated
131 ZNF891 1 99.0 Weakly correlated
132 ZNF91 1 6.0 Weakly correlated
133 ZNF92 1 28.9 Highly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF562 44 28.9 Highly correlated
2 ZNF561 6 43.0 Weakly correlated
3 ZNF680 3 28.9 Highly correlated
4 ZNF33A 2 99.0 Weakly correlated
5 ZNF257 2 0.0 Weakly correlated
6 ZNF44 2 43.0 Weakly correlated
7 ZFP57 2 87.0 Weakly correlated
8 ZNF202 2 160.0 Weakly correlated
9 ZNF766 1 43.0 Weakly correlated
10 ZNF793 1 99.0 Weakly correlated
11 ZNF534 1 19.6 Moderately correlated
12 ZNF263 1 180.0 Weakly correlated
13 ZNF846 1 74.0 Weakly correlated
14 ZNF573 1 94.0 Weakly correlated
15 ZNF92 1 28.9 Highly correlated
16 ZNF133 1 99.0 Weakly correlated
17 ZFP69 1 99.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF562 28.9 Highly correlated