ZRdb KZFP & Repeats
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LTR_LTR10B

  • Name
    LTR10B
  • Repbase
    LTR10B
  • Type
    LTR
  • Emergence
    28.9 Mya
  • Dfam Id
    DF0000391
Description :

LTR10B is a long terminal repeat associated with HERVI.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgtcagatacagaagaagttcctcttcaaaggtttagcttgtttaagtttccttgttctttgttccctgctttcaaggccaaacttccttactctctgtgcctccctgccctggtttcagtaaacaaccttcccgccggtccttatctacagagcccacattccacatctgctacccactctgtaaattacccctcccgtcgcaacggctcctcccgccgaaactgcccttcccgccagtgtaaccgcattcctgcacttttcaagttagccaaccgggttcagcttagattgtgcggtccaactccagccaatggaggcaggacacagtagcagggacaagctgcgttagggataaaaaccccttccctcctttgttcggtgtgctctcgtggcgaccagacctgcgagnagcacccttctgcagaagtaaatttcgccttgctgagaaatcctttgtttnagtgctcgttcttctttgcgacnccgagcatttatttccaaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF562 18 28.9 Highly correlated
2 ZNF766 9 43.0 Weakly correlated
3 ZNF382 8 99.0 Weakly correlated
4 ZNF394 6 99.0 Weakly correlated
5 ZNF175 5 94.0 Weakly correlated
6 ZNF18 5 160.0 Weakly correlated
7 ZNF2 5 99.0 Weakly correlated
8 ZFP37 4 99.0 Weakly correlated
9 ZKSCAN8 4 160.0 Weakly correlated
10 ZNF589 4 28.9 Highly correlated
11 ZNF197 4 99.0 Weakly correlated
12 ZNF680 3 28.9 Highly correlated
13 ZNF707 3 74.0 Weakly correlated
14 ZNF75D 2 94.0 Weakly correlated
15 ZNF610 2 28.9 Highly correlated
16 ZFP69B 2 99.0 Weakly correlated
17 ZNF263 2 180.0 Weakly correlated
18 ZKSCAN1 2 160.0 Weakly correlated
19 ZNF701 1 28.9 Highly correlated
20 ZNF8 1 99.0 Weakly correlated
21 ZNF695 1 28.9 Highly correlated
22 ZNF786 1 99.0 Weakly correlated
23 ZNF793 1 99.0 Weakly correlated
24 ZNF584 1 99.0 Weakly correlated
25 ZNF558 1 99.0 Weakly correlated
26 ZNF506 1 28.9 Highly correlated
27 ZNF468 1 28.9 Highly correlated
28 ZNF41 1 99.0 Weakly correlated
29 ZNF324 1 99.0 Weakly correlated
30 ZNF317 1 99.0 Weakly correlated
31 ZNF282 1 319.0 Weakly correlated
32 ZNF273 1 28.9 Highly correlated
33 ZNF133 1 99.0 Weakly correlated
34 ZNF101 1 43.0 Weakly correlated
35 ZFP57 1 87.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF562 16 28.9 Highly correlated
2 ZKSCAN1 2 160.0 Weakly correlated
3 ZNF197 2 99.0 Weakly correlated
4 ZNF766 2 43.0 Weakly correlated
5 ZNF175 2 94.0 Weakly correlated
6 ZNF589 2 28.9 Highly correlated
7 ZFP57 1 87.0 Weakly correlated
8 ZNF468 1 28.9 Highly correlated
9 ZNF701 1 28.9 Highly correlated
10 ZNF707 1 74.0 Weakly correlated
11 ZNF680 1 28.9 Highly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF562 28.9 Highly correlated