ZRdb KZFP & Repeats
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LTR_LTR10A

  • Name
    LTR10A
  • Repbase
    LTR10A
  • Type
    LTR
  • Emergence
    28.9 Mya
  • Dfam Id
    DF0000390
Description :

LTR10A is a long terminal repeat associated with HERVI.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgttaaatacagtgagttccgagtttctcttcaaagaaccagtatgtcagtatgttcagctcccctgttctttgttctccattttaaagtttaacttccgtnnnttcgnctcncctgctccttgttctccattnnaaantttnncccgccagttctaatcagtagttcacatctgttcccctggtcacctgctccgtcctgagtcacccctggtcacctgctctgacctgagtcacccttagtcacctgttctgtaaccgtccttcccgccaaactactcaccccgccactccggctcgtacccctgctctctttaaaatagccaatcggaattagcttagactgtgcggtccaaccctagccaataggggaacgacacagcagtaggggctacctgcgtcaggaataagaaccccttcccctcccttgtccaggtgtgctctcgccattgctccatccgcgagncgcacccttctatagaagtaaaattgccttgctgagaaaattaaatttatgttcgagtgctatttcttttgcggcaccgaaacaagcattaaatttatgttcaagtgctatttctttcgcggcaccgaaactttacgtataaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF562 117 28.9 Highly correlated
2 ZNF382 102 99.0 Weakly correlated
3 ZNF394 49 99.0 Weakly correlated
4 ZNF680 49 28.9 Highly correlated
5 ZNF766 48 43.0 Weakly correlated
6 ZNF175 43 94.0 Weakly correlated
7 ZFP37 42 99.0 Weakly correlated
8 ZNF589 42 28.9 Highly correlated
9 ZNF324 39 99.0 Weakly correlated
10 ZNF264 29 99.0 Weakly correlated
11 ZNF2 28 99.0 Weakly correlated
12 ZNF197 27 99.0 Weakly correlated
13 ZNF584 26 99.0 Weakly correlated
14 ZNF18 25 160.0 Weakly correlated
15 ZFP69B 24 99.0 Weakly correlated
16 ZNF547 24 74.0 Weakly correlated
17 ZNF792 24 94.0 Weakly correlated
18 ZNF8 24 99.0 Weakly correlated
19 ZNF558 22 99.0 Weakly correlated
20 ZKSCAN8 20 160.0 Weakly correlated
21 ZNF561 20 43.0 Weakly correlated
22 ZNF707 20 74.0 Weakly correlated
23 ZFP57 19 87.0 Weakly correlated
24 ZNF101 19 43.0 Weakly correlated
25 ZNF274 18 99.0 Weakly correlated
26 ZIM3 14 87.0 Weakly correlated
27 ZNF30 14 94.0 Weakly correlated
28 ZNF610 13 28.9 Highly correlated
29 ZNF140 12 99.0 Weakly correlated
30 ZNF202 12 160.0 Weakly correlated
31 ZNF257 12 0.0 Weakly correlated
32 ZNF263 12 180.0 Weakly correlated
33 ZNF33A 12 99.0 Weakly correlated
34 ZNF528 12 43.0 Weakly correlated
35 ZNF641 12 99.0 Weakly correlated
36 ZNF483 11 99.0 Weakly correlated
37 ZNF549 11 87.0 Weakly correlated
38 ZNF100 10 28.9 Highly correlated
39 ZNF184 10 99.0 Weakly correlated
40 ZNF317 10 99.0 Weakly correlated
41 ZNF320 10 28.9 Highly correlated
42 ZNF141 9 43.0 Weakly correlated
43 ZNF224 9 69.0 Weakly correlated
44 ZNF585B 9 99.0 Weakly correlated
45 ZNF658 9 99.0 Weakly correlated
46 ZNF169 8 94.0 Weakly correlated
47 ZNF211 8 94.0 Weakly correlated
48 ZNF354C 8 99.0 Weakly correlated
49 ZNF506 8 28.9 Highly correlated
50 ZNF554 8 99.0 Weakly correlated
51 ZKSCAN1 7 160.0 Weakly correlated
52 ZNF114 7 28.9 Highly correlated
53 ZNF331 7 94.0 Weakly correlated
54 ZNF419 7 28.9 Highly correlated
55 ZNF479 7 6.4 Weakly correlated
56 ZNF597 7 94.0 Weakly correlated
57 ZNF682 7 28.9 Highly correlated
58 ZNF701 7 28.9 Highly correlated
59 ZNF75D 7 94.0 Weakly correlated
60 ZNF793 7 99.0 Weakly correlated
61 ZNF816 7 28.9 Highly correlated
62 ZFP28 6 99.0 Weakly correlated
63 ZNF12 6 99.0 Weakly correlated
64 ZNF251 6 94.0 Weakly correlated
65 ZNF282 6 319.0 Weakly correlated
66 ZNF468 6 28.9 Highly correlated
67 ZNF486 6 8.6 Weakly correlated
68 ZNF582 6 99.0 Weakly correlated
69 ZNF669 6 43.0 Weakly correlated
70 ZNF81 6 99.0 Weakly correlated
71 ZNF85 6 28.9 Highly correlated
72 ZNF250 5 99.0 Weakly correlated
73 ZNF28 5 28.9 Highly correlated
74 ZNF350 5 99.0 Weakly correlated
75 ZNF433 5 43.0 Weakly correlated
76 ZNF454 5 99.0 Weakly correlated
77 ZNF695 5 28.9 Highly correlated
78 ZNF705B 5 28.9 Highly correlated
79 ZNF705D 5 28.9 Highly correlated
80 PRDM9 4 0.0 Weakly correlated
81 ZFP30 4 99.0 Weakly correlated
82 ZFP92 4 99.0 Weakly correlated
83 ZKSCAN2 4 180.0 Weakly correlated
84 ZKSCAN4 4 99.0 Weakly correlated
85 ZKSCAN5 4 160.0 Weakly correlated
86 ZNF112 4 99.0 Weakly correlated
87 ZNF124 4 43.0 Weakly correlated
88 ZNF132 4 94.0 Weakly correlated
89 ZNF14 4 69.0 Weakly correlated
90 ZNF157 4 99.0 Weakly correlated
91 ZNF160 4 74.0 Weakly correlated
92 ZNF177 4 94.0 Weakly correlated
93 ZNF182 4 99.0 Weakly correlated
94 ZNF195 4 28.9 Highly correlated
95 ZNF221 4 74.0 Weakly correlated
96 ZNF222 4 43.0 Weakly correlated
97 ZNF223 4 43.0 Weakly correlated
98 ZNF226 4 99.0 Weakly correlated
99 ZNF227 4 99.0 Weakly correlated
100 ZNF229 4 99.0 Weakly correlated
101 ZNF230 4 28.9 Highly correlated
102 ZNF233 4 99.0 Weakly correlated
103 ZNF234 4 99.0 Weakly correlated
104 ZNF253 4 19.6 Moderately correlated
105 ZNF25 4 99.0 Weakly correlated
106 ZNF268 4 94.0 Weakly correlated
107 ZNF26 4 99.0 Weakly correlated
108 ZNF273 4 28.9 Highly correlated
109 ZNF283 4 99.0 Weakly correlated
110 ZNF284 4 43.0 Weakly correlated
111 ZNF285 4 94.0 Weakly correlated
112 ZNF286A 4 160.0 Weakly correlated
113 ZNF287 4 99.0 Weakly correlated
114 ZNF300 4 99.0 Weakly correlated
115 ZNF302 4 43.0 Weakly correlated
116 ZNF324B 4 99.0 Weakly correlated
117 ZNF333 4 99.0 Weakly correlated
118 ZNF334 4 99.0 Weakly correlated
119 ZNF337 4 43.0 Weakly correlated
120 ZNF33B 4 99.0 Weakly correlated
121 ZNF347 4 43.0 Weakly correlated
122 ZNF37A 4 99.0 Weakly correlated
123 ZNF383 4 99.0 Weakly correlated
124 ZNF404 4 94.0 Weakly correlated
125 ZNF416 4 43.0 Weakly correlated
126 ZNF417 4 28.9 Highly correlated
127 ZNF418 4 43.0 Weakly correlated
128 ZNF420 4 94.0 Weakly correlated
129 ZNF425 4 94.0 Weakly correlated
130 ZNF426 4 87.0 Weakly correlated
131 ZNF429 4 28.9 Highly correlated
132 ZNF430 4 19.6 Moderately correlated
133 ZNF431 4 28.9 Highly correlated
134 ZNF432 4 99.0 Weakly correlated
135 ZNF439 4 8.6 Weakly correlated
136 ZNF43 4 43.0 Weakly correlated
137 ZNF441 4 43.0 Weakly correlated
138 ZNF442 4 43.0 Weakly correlated
139 ZNF443 4 19.6 Moderately correlated
140 ZNF445 4 99.0 Weakly correlated
141 ZNF446 4 94.0 Weakly correlated
142 ZNF44 4 43.0 Weakly correlated
143 ZNF45 4 99.0 Weakly correlated
144 ZNF460 4 74.0 Weakly correlated
145 ZNF461 4 99.0 Weakly correlated
146 ZNF470 4 99.0 Weakly correlated
147 ZNF471 4 94.0 Weakly correlated
148 ZNF473 4 43.0 Weakly correlated
149 ZNF484 4 99.0 Weakly correlated
150 ZNF487 4 28.9 Highly correlated
151 ZNF500 4 160.0 Weakly correlated
152 ZNF510 4 99.0 Weakly correlated
153 ZNF514 4 94.0 Weakly correlated
154 ZNF517 4 94.0 Weakly correlated
155 ZNF519 4 19.6 Moderately correlated
156 ZNF530 4 28.9 Highly correlated
157 ZNF534 4 19.6 Moderately correlated
158 ZNF544 4 0.0 Weakly correlated
159 ZNF546 4 99.0 Weakly correlated
160 ZNF548 4 94.0 Weakly correlated
161 ZNF551 4 94.0 Weakly correlated
162 ZNF555 4 94.0 Weakly correlated
163 ZNF556 4 94.0 Weakly correlated
164 ZNF559 4 74.0 Weakly correlated
165 ZNF560 4 43.0 Weakly correlated
166 ZNF565 4 99.0 Weakly correlated
167 ZNF568 4 99.0 Weakly correlated
168 ZNF569 4 99.0 Weakly correlated
169 ZNF571 4 99.0 Weakly correlated
170 ZNF578 4 15.2 Moderately correlated
171 ZNF57 4 28.9 Highly correlated
172 ZNF583 4 99.0 Weakly correlated
173 ZNF585A 4 99.0 Weakly correlated
174 ZNF587B 4 8.6 Weakly correlated
175 ZNF587 4 28.9 Highly correlated
176 ZNF599 4 99.0 Weakly correlated
177 ZNF606 4 99.0 Weakly correlated
178 ZNF607 4 43.0 Weakly correlated
179 ZNF611 4 19.6 Moderately correlated
180 ZNF613 4 99.0 Weakly correlated
181 ZNF616 4 43.0 Weakly correlated
182 ZNF624 4 99.0 Weakly correlated
183 ZNF630 4 94.0 Weakly correlated
184 ZNF649 4 28.9 Highly correlated
185 ZNF665 4 28.9 Highly correlated
186 ZNF66 4 0.0 Weakly correlated
187 ZNF670 4 69.0 Weakly correlated
188 ZNF671 4 94.0 Weakly correlated
189 ZNF674 4 99.0 Weakly correlated
190 ZNF675 4 8.6 Weakly correlated
191 ZNF677 4 99.0 Weakly correlated
192 ZNF679 4 28.9 Highly correlated
193 ZNF681 4 28.9 Highly correlated
194 ZNF688 4 160.0 Weakly correlated
195 ZNF689 4 99.0 Weakly correlated
196 ZNF699 4 99.0 Weakly correlated
197 ZNF700 4 28.9 Highly correlated
198 ZNF705A 4 28.9 Highly correlated
199 ZNF705E 4 0.0 Weakly correlated
200 ZNF709 4 87.0 Weakly correlated
201 ZNF713 4 94.0 Weakly correlated
202 ZNF717 4 0.0 Weakly correlated
203 ZNF718 4 19.6 Moderately correlated
204 ZNF723 4 15.2 Moderately correlated
205 ZNF726 4 28.9 Highly correlated
206 ZNF727 4 19.6 Moderately correlated
207 ZNF728 4 19.6 Moderately correlated
208 ZNF729 4 8.6 Weakly correlated
209 ZNF730 4 19.6 Moderately correlated
210 ZNF732 4 28.9 Highly correlated
211 ZNF735 4 28.9 Highly correlated
212 ZNF736 4 43.0 Weakly correlated
213 ZNF747 4 43.0 Weakly correlated
214 ZNF761 4 19.6 Moderately correlated
215 ZNF763 4 15.2 Moderately correlated
216 ZNF765 4 8.6 Weakly correlated
217 ZNF772 4 94.0 Weakly correlated
218 ZNF773 4 94.0 Weakly correlated
219 ZNF776 4 43.0 Weakly correlated
220 ZNF778 4 74.0 Weakly correlated
221 ZNF77 4 87.0 Weakly correlated
222 ZNF780B 4 74.0 Weakly correlated
223 ZNF786 4 99.0 Weakly correlated
224 ZNF789 4 99.0 Weakly correlated
225 ZNF791 4 87.0 Weakly correlated
226 ZNF799 4 43.0 Weakly correlated
227 ZNF813 4 28.9 Highly correlated
228 ZNF814 4 0.0 Weakly correlated
229 ZNF829 4 99.0 Weakly correlated
230 ZNF836 4 43.0 Weakly correlated
231 ZNF845 4 28.9 Highly correlated
232 ZNF846 4 74.0 Weakly correlated
233 ZNF850 4 28.9 Highly correlated
234 ZNF852 4 94.0 Weakly correlated
235 ZNF860 4 0.0 Weakly correlated
236 ZNF878 4 43.0 Weakly correlated
237 ZNF879 4 99.0 Weakly correlated
238 ZNF891 4 99.0 Weakly correlated
239 ZNF90 4 8.6 Weakly correlated
240 RBAK 3 99.0 Weakly correlated
241 ZFP14 3 99.0 Weakly correlated
242 ZFP1 3 99.0 Weakly correlated
243 ZFP69 3 99.0 Weakly correlated
244 ZFP90 3 99.0 Weakly correlated
245 ZIK1 3 87.0 Weakly correlated
246 ZIM2 3 0.0 Weakly correlated
247 ZKSCAN3 3 99.0 Weakly correlated
248 ZKSCAN7 3 99.0 Weakly correlated
249 ZNF10 3 99.0 Weakly correlated
250 ZNF133 3 99.0 Weakly correlated
251 ZNF135 3 94.0 Weakly correlated
252 ZNF136 3 74.0 Weakly correlated
253 ZNF154 3 94.0 Weakly correlated
254 ZNF17 3 69.0 Weakly correlated
255 ZNF180 3 99.0 Weakly correlated
256 ZNF181 3 94.0 Weakly correlated
257 ZNF189 3 99.0 Weakly correlated
258 ZNF19 3 99.0 Weakly correlated
259 ZNF205 3 180.0 Weakly correlated
260 ZNF212 3 160.0 Weakly correlated
261 ZNF214 3 99.0 Weakly correlated
262 ZNF225 3 74.0 Weakly correlated
263 ZNF235 3 99.0 Weakly correlated
264 ZNF248 3 99.0 Weakly correlated
265 ZNF254 3 43.0 Weakly correlated
266 ZNF267 3 43.0 Weakly correlated
267 ZNF304 3 99.0 Weakly correlated
268 ZNF311 3 99.0 Weakly correlated
269 ZNF343 3 74.0 Weakly correlated
270 ZNF34 3 99.0 Weakly correlated
271 ZNF354A 3 99.0 Weakly correlated
272 ZNF354B 3 99.0 Weakly correlated
273 ZNF398 3 99.0 Weakly correlated
274 ZNF3 3 160.0 Weakly correlated
275 ZNF440 3 28.9 Highly correlated
276 ZNF480 3 43.0 Weakly correlated
277 ZNF485 3 94.0 Weakly correlated
278 ZNF496 3 99.0 Weakly correlated
279 ZNF525 3 19.6 Moderately correlated
280 ZNF527 3 99.0 Weakly correlated
281 ZNF529 3 99.0 Weakly correlated
282 ZNF540 3 87.0 Weakly correlated
283 ZNF543 3 99.0 Weakly correlated
284 ZNF550 3 94.0 Weakly correlated
285 ZNF552 3 28.9 Highly correlated
286 ZNF557 3 15.2 Moderately correlated
287 ZNF564 3 74.0 Weakly correlated
288 ZNF566 3 99.0 Weakly correlated
289 ZNF567 3 99.0 Weakly correlated
290 ZNF570 3 99.0 Weakly correlated
291 ZNF573 3 94.0 Weakly correlated
292 ZNF577 3 94.0 Weakly correlated
293 ZNF595 3 43.0 Weakly correlated
294 ZNF605 3 99.0 Weakly correlated
295 ZNF614 3 99.0 Weakly correlated
296 ZNF615 3 99.0 Weakly correlated
297 ZNF620 3 99.0 Weakly correlated
298 ZNF626 3 0.0 Weakly correlated
299 ZNF627 3 74.0 Weakly correlated
300 ZNF667 3 99.0 Weakly correlated
301 ZNF684 3 99.0 Weakly correlated
302 ZNF69 3 28.9 Highly correlated
303 ZNF705G 3 28.9 Highly correlated
304 ZNF716 3 19.6 Moderately correlated
305 ZNF737 3 28.9 Highly correlated
306 ZNF749 3 28.9 Highly correlated
307 ZNF74 3 99.0 Weakly correlated
308 ZNF764 3 160.0 Weakly correlated
309 ZNF777 3 319.0 Weakly correlated
310 ZNF780A 3 43.0 Weakly correlated
311 ZNF782 3 99.0 Weakly correlated
312 ZNF785 3 94.0 Weakly correlated
313 ZNF790 3 99.0 Weakly correlated
314 ZNF7 3 99.0 Weakly correlated
315 ZNF805 3 99.0 Weakly correlated
316 ZNF808 3 19.6 Moderately correlated
317 ZNF823 3 43.0 Weakly correlated
318 ZNF84 3 99.0 Weakly correlated
319 ZNF880 3 28.9 Highly correlated
320 ZNF93 3 8.6 Weakly correlated
321 ZFP82 2 99.0 Weakly correlated
322 ZNF436 2 180.0 Weakly correlated
323 ZNF490 2 43.0 Weakly correlated
324 ZNF596 2 94.0 Weakly correlated
325 ZNF92 2 28.9 Highly correlated
326 ZNF75A 1 94.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF562 109 28.9 Highly correlated
2 ZNF561 16 43.0 Weakly correlated
3 ZFP37 13 99.0 Weakly correlated
4 ZFP57 7 87.0 Weakly correlated
5 ZNF554 7 99.0 Weakly correlated
6 ZNF257 6 0.0 Weakly correlated
7 ZNF680 5 28.9 Highly correlated
8 ZNF701 4 28.9 Highly correlated
9 ZNF263 3 180.0 Weakly correlated
10 PRDM9 3 0.0 Weakly correlated
11 ZIM3 2 87.0 Weakly correlated
12 ZNF382 2 99.0 Weakly correlated
13 ZNF324 1 99.0 Weakly correlated
14 ZNF479 1 6.4 Weakly correlated
15 ZNF417 1 28.9 Highly correlated
16 ZNF28 1 28.9 Highly correlated
17 ZNF468 1 28.9 Highly correlated
18 ZNF17 1 69.0 Weakly correlated
19 ZNF317 1 99.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZFP37 99.0 Weakly correlated
2 ZNF257 0.0 Weakly correlated
3 ZNF554 99.0 Weakly correlated
4 ZNF562 28.9 Highly correlated