ZRdb KZFP & Repeats
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LTR_LTR105_MAM

  • Name
    LTR105_MAM
  • Repbase
    No find
  • Type
    LTR
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000381
Description :

Classification is based on 5 bp TSDs and similarity to the R region ofLTR40.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgtggtgcaacgagcaggattgtccgaaaatgaccctgggagctcactctgggttgcctggacaacgagctagctgggaccgggggtcccccttctcccagcgggaggggctgcacccaagctcagcttcccacgggaccggtggcttcctccccccggcaggaggggctgcaacttcccacgggccccaaggtctccaggtgctgggcagctggctttcccagacaactcctgtaaacagctggcacccaaacccagactgcctggcgcccaagcagtctgtttattcccccactgacaaggctgctctcacgcttgccctataaaaagggagagcgacgggagggcggggtccctccnctggaacgcagacccacactgcgtgtccagcagagcgcctggccccggcacgcctctccgtggggatgatgggaggatgggggacccgtgccttctcttctcttgctgaccctggccttgtaagttttccctttccccaataaagcctattccttaacccatgccgtgtgacgttgtggaattcgtcccgagccctgtgcacgacaggtgggacccngaagggacccaccttgcacgaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF263 19 180.0 Weakly correlated
2 ZNF479 14 6.4 Weakly correlated
3 ZNF382 9 99.0 Highly correlated
4 ZNF680 7 28.9 Weakly correlated
5 ZNF679 6 28.9 Weakly correlated
6 ZKSCAN1 6 160.0 Weakly correlated
7 ZNF766 6 43.0 Weakly correlated
8 ZNF75D 5 94.0 Moderately correlated
9 ZNF28 5 28.9 Weakly correlated
10 ZNF394 4 99.0 Highly correlated
11 ZNF320 4 28.9 Weakly correlated
12 ZNF18 4 160.0 Weakly correlated
13 ZNF735 3 28.9 Weakly correlated
14 ZNF589 3 28.9 Weakly correlated
15 ZNF705B 3 28.9 Weakly correlated
16 ZNF257 3 0.0 Weakly correlated
17 ZNF175 3 94.0 Moderately correlated
18 ZNF101 3 43.0 Weakly correlated
19 ZNF317 2 99.0 Highly correlated
20 ZIM3 2 87.0 Moderately correlated
21 ZNF141 2 43.0 Weakly correlated
22 ZNF140 2 99.0 Highly correlated
23 ZFP37 2 99.0 Highly correlated
24 ZNF701 2 28.9 Weakly correlated
25 ZNF597 2 94.0 Moderately correlated
26 ZNF558 2 99.0 Highly correlated
27 ZNF878 1 43.0 Weakly correlated
28 ZNF749 1 28.9 Weakly correlated
29 ZNF793 1 99.0 Highly correlated
30 ZNF705D 1 28.9 Weakly correlated
31 ZNF716 1 19.6 Weakly correlated
32 ZNF723 1 15.2 Weakly correlated
33 ZNF786 1 99.0 Highly correlated
34 ZNF485 1 94.0 Moderately correlated
35 ZNF674 1 99.0 Highly correlated
36 ZNF587 1 28.9 Weakly correlated
37 ZNF554 1 99.0 Highly correlated
38 ZNF534 1 19.6 Weakly correlated
39 ZNF510 1 99.0 Highly correlated
40 ZNF2 1 99.0 Highly correlated
41 ZNF284 1 43.0 Weakly correlated
42 ZNF234 1 99.0 Highly correlated
43 ZNF197 1 99.0 Highly correlated
44 ZNF177 1 94.0 Moderately correlated
45 ZKSCAN8 1 160.0 Weakly correlated
46 ZFP69B 1 99.0 Highly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF479 9 6.4 Weakly correlated
2 ZNF263 6 180.0 Weakly correlated
3 ZNF141 2 43.0 Weakly correlated
4 ZNF735 2 28.9 Weakly correlated
5 ZNF597 2 94.0 Moderately correlated
6 ZNF680 2 28.9 Weakly correlated
7 ZNF28 2 28.9 Weakly correlated
8 ZNF723 1 15.2 Weakly correlated
9 ZIM3 1 87.0 Moderately correlated
10 ZNF716 1 19.6 Weakly correlated
11 ZNF587 1 28.9 Weakly correlated
12 ZNF793 1 99.0 Highly correlated
13 ZNF75D 1 94.0 Moderately correlated
14 ZNF749 1 28.9 Weakly correlated
15 ZNF382 1 99.0 Highly correlated
16 ZNF320 1 28.9 Weakly correlated
17 ZNF197 1 99.0 Highly correlated
18 ZNF534 1 19.6 Weakly correlated
19 ZNF679 1 28.9 Weakly correlated
20 ZKSCAN1 1 160.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF263 180.0 Weakly correlated
2 ZNF479 6.4 Weakly correlated