ZRdb KZFP & Repeats
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LTR_LTR104_MAM

  • Name
    LTR104_MAM
  • Repbase
    No find
  • Type
    LTR
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000380
Description :

Eutherian-speciic, apparently with no copies in monotremes ormarsupials.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgtaacggggtgccctggctgagactggaccttaagatttttgaagctgaaaaactgccattttaaaagttgcaagcagtttctgtcttctagggtggagacttgaatttacctttggggcagaccgttcctttgttctgggaaaaccactcgaatgggccctttagttacgcaaatgtaaagcaagtacccacccattgttcttggagaagacctaaacgcagatgcttcagactgagatgttaagtgttctgtttagtaatgtaaattgggtgtatnttttagcagaactgtgtctctgcagattgtatttcttttagagaaatgtttcttttctaaatntggatttagactgcnctgtgcctgaaaattattgcttgttcttgggagatgtgtgcgatgtnttcttgtccgagcanttgctcgcaggagatcggagactggacggcggagcacgcaggagggacgcgcaggcctgatcttctcttcacctcacgctggaggaaagaccgtgaaaaggaactggactgggcttggcgcagcncaacctggactggactgttggtgtcccacacgtggtgttatttaagactgaataacccagactttgggaaatgtactgtcgactattgtgattgtcttgtctgggccatgagggccagaccacacccctgtgggtgggggtggggatttcccctgaagggaatggacgttcccactgtcaatcatcctgggaagaggtnaatcctggggcaggaaatgaggactcgggaggcgggccttagactggggggaggggaaaactccttcctcctctctgggcctagggggcagttgggcctggactccgaggcgcggagatgcccggagcattcccggtggtgggggtgagctggcccctgccacgtggaggcgggccgggagcnaggcagggaggcggcccngnaagggaccctgaggncgggtctgggcctgtgggctctgagagcagccacntctagtagcagttgtaagttactctctgtgttgtanttcccttccgttatccccgagccttcagtaaagtcttgttaaaagttacagcctggtctcagctgtgctgtggggaattaagggaagggcctgtgtccacgcttggggcggagcggcgaaggggagagcagcgtcccctcccctgaggccagagtggtggtagcagcggcggccaccggcggaggacggctgtgcccagcggagcggcggcctcgcgggggccgtcggcagcagaggcggcggcgtggcggcangacgaggaggccggagcggaagaacatgagggacccgttcctgagcacacgtgaggcagcaccctggggaactctcagaaatagctgggggacactttgaggggggctaatttccggcaatnaggccggtgggggctcgngccatnataatttgggtattaaaaggaagtgtgacctcattttgtagtcacaggctggtgaggccngggacatntgggttaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 54 99.0 Highly correlated
2 ZNF766 46 43.0 Weakly correlated
3 ZNF263 21 180.0 Weakly correlated
4 ZNF680 21 28.9 Weakly correlated
5 ZNF175 20 94.0 Moderately correlated
6 ZFP37 16 99.0 Highly correlated
7 ZNF589 15 28.9 Weakly correlated
8 ZNF479 14 6.4 Weakly correlated
9 ZKSCAN1 14 160.0 Weakly correlated
10 ZNF2 14 99.0 Highly correlated
11 ZNF394 12 99.0 Highly correlated
12 ZNF597 12 94.0 Moderately correlated
13 ZNF18 11 160.0 Weakly correlated
14 ZNF197 11 99.0 Highly correlated
15 ZNF584 11 99.0 Highly correlated
16 ZNF101 10 43.0 Weakly correlated
17 ZNF534 9 19.6 Weakly correlated
18 ZKSCAN8 9 160.0 Weakly correlated
19 ZNF75D 8 94.0 Moderately correlated
20 ZNF558 7 99.0 Highly correlated
21 ZFP69B 7 99.0 Highly correlated
22 ZNF528 7 43.0 Weakly correlated
23 ZNF324 7 99.0 Highly correlated
24 ZNF701 7 28.9 Weakly correlated
25 ZNF723 6 15.2 Weakly correlated
26 ZNF317 5 99.0 Highly correlated
27 ZNF251 5 94.0 Moderately correlated
28 ZNF554 4 99.0 Highly correlated
29 ZNF705B 4 28.9 Weakly correlated
30 ZNF92 4 28.9 Weakly correlated
31 ZFP57 4 87.0 Moderately correlated
32 ZNF274 4 99.0 Highly correlated
33 ZNF320 4 28.9 Weakly correlated
34 ZIM3 3 87.0 Moderately correlated
35 ZNF705D 3 28.9 Weakly correlated
36 ZNF141 3 43.0 Weakly correlated
37 ZNF485 3 94.0 Moderately correlated
38 ZNF257 3 0.0 Weakly correlated
39 ZNF679 3 28.9 Weakly correlated
40 ZNF28 3 28.9 Weakly correlated
41 ZNF429 2 28.9 Weakly correlated
42 ZNF695 2 28.9 Weakly correlated
43 ZNF610 2 28.9 Weakly correlated
44 ZNF264 2 99.0 Highly correlated
45 ZNF519 2 19.6 Weakly correlated
46 ZNF343 1 74.0 Weakly correlated
47 ZFP69 1 99.0 Highly correlated
48 ZNF85 1 28.9 Weakly correlated
49 ZNF823 1 43.0 Weakly correlated
50 ZNF780B 1 74.0 Weakly correlated
51 ZNF780A 1 43.0 Weakly correlated
52 ZNF41 1 99.0 Highly correlated
53 ZKSCAN5 1 160.0 Weakly correlated
54 ZNF75A 1 94.0 Moderately correlated
55 ZNF735 1 28.9 Weakly correlated
56 ZNF133 1 99.0 Highly correlated
57 ZNF716 1 19.6 Weakly correlated
58 ZNF433 1 43.0 Weakly correlated
59 ZNF140 1 99.0 Highly correlated
60 ZNF436 1 180.0 Weakly correlated
61 ZNF549 1 87.0 Moderately correlated
62 ZNF681 1 28.9 Weakly correlated
63 ZNF506 1 28.9 Weakly correlated
64 ZNF671 1 94.0 Moderately correlated
65 ZNF611 1 19.6 Weakly correlated
66 ZNF334 1 99.0 Highly correlated
67 ZNF605 1 99.0 Highly correlated
68 ZNF530 1 28.9 Weakly correlated
69 ZNF333 1 99.0 Highly correlated
70 ZNF585A 1 99.0 Highly correlated
71 ZNF284 1 43.0 Weakly correlated
72 ZNF568 1 99.0 Highly correlated
73 ZNF562 1 28.9 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF479 8 6.4 Weakly correlated
2 ZNF680 5 28.9 Weakly correlated
3 ZNF263 4 180.0 Weakly correlated
4 ZNF534 4 19.6 Weakly correlated
5 ZNF75D 3 94.0 Moderately correlated
6 ZNF597 3 94.0 Moderately correlated
7 ZNF382 3 99.0 Highly correlated
8 ZNF723 2 15.2 Weakly correlated
9 ZNF766 2 43.0 Weakly correlated
10 ZNF436 1 180.0 Weakly correlated
11 ZNF101 1 43.0 Weakly correlated
12 ZNF589 1 28.9 Weakly correlated
13 ZNF175 1 94.0 Moderately correlated
14 ZNF429 1 28.9 Weakly correlated
15 ZNF530 1 28.9 Weakly correlated
16 ZNF701 1 28.9 Weakly correlated
17 ZNF75A 1 94.0 Moderately correlated
18 ZNF28 1 28.9 Weakly correlated
19 ZNF197 1 99.0 Highly correlated
20 ZNF18 1 160.0 Weakly correlated
21 ZFP57 1 87.0 Moderately correlated
22 ZNF780B 1 74.0 Weakly correlated
23 ZNF584 1 99.0 Highly correlated
24 ZNF317 1 99.0 Highly correlated
25 ZNF320 1 28.9 Weakly correlated
26 ZNF2 1 99.0 Highly correlated
27 ZNF141 1 43.0 Weakly correlated
28 ZKSCAN5 1 160.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats