ZRdb KZFP & Repeats
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LTR_LTR102_MAM

  • Name
    LTR102_MAM
  • Repbase
    No find
  • Type
    LTR
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000377
Description :

LTR102_Mam has 5 bp Target Site Duplications, and is not similar to anyother human LTR. The substitution level found in the Laurasiatherianreconstruction is 25%.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgtaatgtgcgtttgctgtattatttgagaatattcaattctgctatagaagacaagaaaacaaatgggatggatgaaactcataagatgtgttaagtatagatagtaagtaagcaagtagcttgtgagacataggcagaattcataagatgtgttaagtatagatagtaagttagtaacctgtaagacatgttaaagatagaanaaatggatatatgataaaagatggaacaaacaagagtgttacttatagatagaaagggatggaaagaccaagtcataaggtacggatcatgccacctccgggctgacagctatgtcatccctaaatcggccacccattggtgacacccattctggccccacgtgtcctctgcccaagaaacgcagataaaacccatagctgctcagcaggctaattggcgagctacagctgtggccaggcgtacttgcccctgcgtctctccgatagagcaagtgtgtgttggccccgggcaccttccgtctgctgggcccccttgctcaaacctcaactctggtcctcgtaaccacaccatcagcggggaaggctgatgcggcagagagagagacaggacatatgaacattgcgtaacccaggattcaggtagtgtggtccttccaccccgcttgcaccctatcctaagtgtgttaacctaccccatctctttccccttgcttctcgctgtgtgttttaaattgatttaataaaccgtgtgattcgagcatcttaatttggtctgtgagcctttctgttccgtgacctctgggatagcttgcctggtagtgtacttggaggctaccattgcatcaaggtaatttcccacacgaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 35 99.0 Highly correlated
2 ZNF766 10 43.0 Weakly correlated
3 ZIM3 9 87.0 Moderately correlated
4 ZNF263 9 180.0 Weakly correlated
5 ZNF705B 8 28.9 Weakly correlated
6 ZNF589 7 28.9 Weakly correlated
7 ZKSCAN1 5 160.0 Weakly correlated
8 ZKSCAN8 5 160.0 Weakly correlated
9 ZNF584 5 99.0 Highly correlated
10 ZNF175 5 94.0 Moderately correlated
11 ZNF705D 4 28.9 Weakly correlated
12 ZNF680 4 28.9 Weakly correlated
13 ZNF18 3 160.0 Weakly correlated
14 ZNF554 3 99.0 Highly correlated
15 ZNF394 3 99.0 Highly correlated
16 ZNF133 3 99.0 Highly correlated
17 ZNF534 3 19.6 Weakly correlated
18 ZNF547 2 74.0 Weakly correlated
19 ZNF490 2 43.0 Weakly correlated
20 ZFP57 2 87.0 Moderately correlated
21 ZNF597 2 94.0 Moderately correlated
22 ZNF679 2 28.9 Weakly correlated
23 ZNF816 2 28.9 Weakly correlated
24 ZNF92 2 28.9 Weakly correlated
25 ZFP37 2 99.0 Highly correlated
26 ZNF479 2 6.4 Weakly correlated
27 ZNF169 2 94.0 Moderately correlated
28 ZNF197 2 99.0 Highly correlated
29 ZNF257 2 0.0 Weakly correlated
30 ZNF674 1 99.0 Highly correlated
31 ZFP69B 1 99.0 Highly correlated
32 ZNF793 1 99.0 Highly correlated
33 ZNF786 1 99.0 Highly correlated
34 ZNF101 1 43.0 Weakly correlated
35 ZNF765 1 8.6 Weakly correlated
36 ZNF202 1 160.0 Weakly correlated
37 ZNF248 1 99.0 Highly correlated
38 ZNF675 1 8.6 Weakly correlated
39 ZNF483 1 99.0 Highly correlated
40 ZNF2 1 99.0 Highly correlated
41 ZNF317 1 99.0 Highly correlated
42 ZNF558 1 99.0 Highly correlated
43 ZNF334 1 99.0 Highly correlated
44 ZNF44 1 43.0 Weakly correlated
45 ZNF543 1 99.0 Highly correlated
46 ZNF468 1 28.9 Weakly correlated
47 ZNF506 1 28.9 Weakly correlated
48 ZNF485 1 94.0 Moderately correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZIM3 5 87.0 Moderately correlated
2 ZNF263 5 180.0 Weakly correlated
3 ZNF705B 4 28.9 Weakly correlated
4 ZNF169 2 94.0 Moderately correlated
5 ZNF534 2 19.6 Weakly correlated
6 ZNF479 2 6.4 Weakly correlated
7 ZNF705D 2 28.9 Weakly correlated
8 ZNF766 2 43.0 Weakly correlated
9 ZNF793 1 99.0 Highly correlated
10 ZNF18 1 160.0 Weakly correlated
11 ZNF490 1 43.0 Weakly correlated
12 ZNF679 1 28.9 Weakly correlated
13 ZNF674 1 99.0 Highly correlated
14 ZNF816 1 28.9 Weakly correlated
15 ZNF394 1 99.0 Highly correlated
16 ZNF483 1 99.0 Highly correlated
17 ZNF680 1 28.9 Weakly correlated
18 ZNF584 1 99.0 Highly correlated
19 ZNF44 1 43.0 Weakly correlated
20 ZNF202 1 160.0 Weakly correlated
21 ZNF506 1 28.9 Weakly correlated
22 ZNF468 1 28.9 Weakly correlated
23 ZNF92 1 28.9 Weakly correlated
24 ZNF485 1 94.0 Moderately correlated
25 ZNF257 1 0.0 Weakly correlated
26 ZNF133 1 99.0 Highly correlated
27 ZNF101 1 43.0 Weakly correlated
28 ZKSCAN1 1 160.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats