ZRdb KZFP & Repeats
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LTR_LTR101_MAM

  • Name
    LTR101_MAM
  • Repbase
    No find
  • Type
    LTR
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000376
Description :

LTR101_Mam has 5 bp Target Site Duplications. The substitution levelfound in the Laurasiatherian reconstruction is 36%.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgttgagtgggcagtattgatcagaggggaaatctattgtattggaggagggaaaggtatcaaggttagttagtagaaataaaatgngttaagtcagtaaattcaggagaanntgtacaggtcagcaagaccttgtagagagagacaaaacgaggaggaggaaactgcggaatgtttgcattcttgcgaccacaagagtgaggtgagccaagaacacagttggagtttgaccaagtggagctgaggtctcggcnaaggctgaactgcgcatgcnccactcccggttgccctggcaacgggacccctnccttatgntaatgacattataatgagaaaagccacatgcaaatgaagtaaacagtaattagaggcggagcnacacgtggtctagctagctccaccttgggggaaggtctggggaggagtttgggaggggtttgtgccgcggacaaagaatgaggtcatgaagggaagaatttgagttatgtataaaagggttaacttgagcctgcgtgctcgagagagtctctgggtactgcagacctgttgcttctcccgctgactttggtcaagtcagtgtaggtaataaatcatgtagttgcatatccacgttgcctcgcctgttctactcgtcggcatcgctgcctggaagaaaccncggactgggaaaaggcggaagctcactctcctggtgccctgtgtaagttggcttgggatcggagcaatcgtggcagcctgctgcttagattgctctccctgccccttgccgtcgcccaggagggttgggcccgcccagagggggtagnggaagtagaacagggagtcaaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 70 99.0 Highly correlated
2 ZNF766 23 43.0 Weakly correlated
3 ZFP37 13 99.0 Highly correlated
4 ZNF263 13 180.0 Weakly correlated
5 ZNF394 10 99.0 Highly correlated
6 ZNF597 8 94.0 Moderately correlated
7 ZIM3 8 87.0 Moderately correlated
8 ZNF317 8 99.0 Highly correlated
9 ZNF101 7 43.0 Weakly correlated
10 ZNF589 7 28.9 Weakly correlated
11 ZNF479 7 6.4 Weakly correlated
12 ZNF534 7 19.6 Weakly correlated
13 ZNF680 7 28.9 Weakly correlated
14 ZKSCAN1 6 160.0 Weakly correlated
15 ZNF175 6 94.0 Moderately correlated
16 ZNF679 6 28.9 Weakly correlated
17 ZNF584 5 99.0 Highly correlated
18 ZNF2 5 99.0 Highly correlated
19 ZNF197 5 99.0 Highly correlated
20 ZNF18 5 160.0 Weakly correlated
21 ZNF701 4 28.9 Weakly correlated
22 ZNF705B 4 28.9 Weakly correlated
23 ZNF257 4 0.0 Weakly correlated
24 ZNF705D 4 28.9 Weakly correlated
25 ZNF320 4 28.9 Weakly correlated
26 ZNF324 4 99.0 Highly correlated
27 ZNF558 4 99.0 Highly correlated
28 ZNF723 4 15.2 Weakly correlated
29 ZFP69B 4 99.0 Highly correlated
30 ZNF425 4 94.0 Moderately correlated
31 ZNF528 4 43.0 Weakly correlated
32 ZKSCAN8 4 160.0 Weakly correlated
33 ZNF554 3 99.0 Highly correlated
34 ZNF793 2 99.0 Highly correlated
35 ZNF92 2 28.9 Weakly correlated
36 ZNF778 2 74.0 Weakly correlated
37 ZNF563 2 28.9 Weakly correlated
38 ZNF610 2 28.9 Weakly correlated
39 ZNF671 2 94.0 Moderately correlated
40 ZNF674 2 99.0 Highly correlated
41 ZFP57 2 87.0 Moderately correlated
42 ZNF519 2 19.6 Weakly correlated
43 ZNF133 2 99.0 Highly correlated
44 ZNF30 2 94.0 Moderately correlated
45 ZNF33A 2 99.0 Highly correlated
46 ZNF486 2 8.6 Weakly correlated
47 ZNF274 1 99.0 Highly correlated
48 ZNF12 1 99.0 Highly correlated
49 ZNF808 1 19.6 Weakly correlated
50 ZNF549 1 87.0 Moderately correlated
51 ZNF136 1 74.0 Weakly correlated
52 ZNF140 1 99.0 Highly correlated
53 ZNF735 1 28.9 Weakly correlated
54 ZNF17 1 69.0 Weakly correlated
55 ZNF707 1 74.0 Weakly correlated
56 ZNF251 1 94.0 Moderately correlated
57 ZNF484 1 99.0 Highly correlated
58 ZNF28 1 28.9 Weakly correlated
59 ZNF567 1 99.0 Highly correlated
60 ZNF331 1 94.0 Moderately correlated
61 ZNF675 1 8.6 Weakly correlated
62 ZNF41 1 99.0 Highly correlated
63 ZNF436 1 180.0 Weakly correlated
64 ZNF44 1 43.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF534 5 19.6 Weakly correlated
2 ZNF263 4 180.0 Weakly correlated
3 ZNF680 4 28.9 Weakly correlated
4 ZNF479 4 6.4 Weakly correlated
5 ZNF197 3 99.0 Highly correlated
6 ZNF320 3 28.9 Weakly correlated
7 ZKSCAN8 2 160.0 Weakly correlated
8 ZNF257 2 0.0 Weakly correlated
9 ZNF528 2 43.0 Weakly correlated
10 ZNF584 2 99.0 Highly correlated
11 ZIM3 2 87.0 Moderately correlated
12 ZNF101 2 43.0 Weakly correlated
13 ZNF331 1 94.0 Moderately correlated
14 ZNF317 1 99.0 Highly correlated
15 ZNF701 1 28.9 Weakly correlated
16 ZNF735 1 28.9 Weakly correlated
17 ZNF394 1 99.0 Highly correlated
18 ZNF610 1 28.9 Weakly correlated
19 ZNF766 1 43.0 Weakly correlated
20 ZNF707 1 74.0 Weakly correlated
21 ZNF679 1 28.9 Weakly correlated
22 ZNF567 1 99.0 Highly correlated
23 ZNF382 1 99.0 Highly correlated
24 ZNF674 1 99.0 Highly correlated
25 ZNF589 1 28.9 Weakly correlated
26 ZNF554 1 99.0 Highly correlated
27 ZNF793 1 99.0 Highly correlated
28 ZNF251 1 94.0 Moderately correlated
29 ZNF175 1 94.0 Moderately correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats