ZRdb KZFP & Repeats
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LTR_LTR1

  • Name
    LTR1
  • Repbase
    LTR1
  • Type
    LTR
  • Emergence
    43.0 Mya
  • Dfam Id
    DF0000375
Description :

Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgatacgggaggggggcagggaagtgctgggnagagaagggcgtggtccctggctagggctccacccccgggcctgtgcccacggacctaggtgaggacaggcatttctgttttcgtgcccaaatgttgcatttcccaagaccaccctggcccgccacgcccccatcctgtgcctataaaaaccccgagaccctagcgggcagagacacaagncggctggacgtcgagaggaacacaccggcggaagagcacaccgacaggcaccggcagacgccggcaggccatcgaccggcggaacgacgcggagtttggccggggcggtcggaggagagcccggccgctgagcggcccgactccaggggaaaaccaccttcccactccatccccttctggctcccccatctgctgagagctacttccactcaataaaaccttgcactcattctccaagcccacgtgtgatccgattcttccggtacaccaaggcaagaaccccgggatacagaaagccctctgtccttgcgataaggcagagggtctaattgagctgattaacacaagccgcctacggacggctaaactaaaagagcacnctgtaacacacgcccactggggcttcaggagctgtaaacattcacccctagacgctgccgtggggtcggagccccacaacctgcccgtctgcatgctcccctagaggtttgagcagcggggcaccgaagaagcgagccacacccccgtcgcacgccctgcgagggggacaagggaacttttcccgtttca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF347 72 43.0 Highly correlated
2 ZNF382 11 99.0 Weakly correlated
3 ZNF2 9 99.0 Weakly correlated
4 ZNF263 9 180.0 Weakly correlated
5 ZNF766 8 43.0 Highly correlated
6 ZKSCAN1 7 160.0 Weakly correlated
7 ZNF680 6 28.9 Moderately correlated
8 ZNF793 6 99.0 Weakly correlated
9 ZIM3 5 87.0 Weakly correlated
10 ZNF705B 5 28.9 Moderately correlated
11 ZNF197 4 99.0 Weakly correlated
12 ZNF674 3 99.0 Weakly correlated
13 ZNF471 3 94.0 Weakly correlated
14 ZNF506 3 28.9 Moderately correlated
15 ZNF18 3 160.0 Weakly correlated
16 ZNF534 3 19.6 Weakly correlated
17 ZNF589 3 28.9 Moderately correlated
18 ZNF705D 2 28.9 Moderately correlated
19 ZNF483 2 99.0 Weakly correlated
20 ZNF701 2 28.9 Moderately correlated
21 ZNF479 2 6.4 Weakly correlated
22 ZNF558 2 99.0 Weakly correlated
23 ZNF566 2 99.0 Weakly correlated
24 ZFP57 2 87.0 Weakly correlated
25 ZNF736 2 43.0 Highly correlated
26 ZNF425 2 94.0 Weakly correlated
27 ZFP37 2 99.0 Weakly correlated
28 ZNF28 2 28.9 Moderately correlated
29 ZNF282 2 319.0 Weakly correlated
30 ZNF274 2 99.0 Weakly correlated
31 ZNF441 2 43.0 Highly correlated
32 ZNF141 2 43.0 Highly correlated
33 ZNF786 1 99.0 Weakly correlated
34 ZNF671 1 94.0 Weakly correlated
35 ZNF93 1 8.6 Weakly correlated
36 ZNF677 1 99.0 Weakly correlated
37 ZNF816 1 28.9 Moderately correlated
38 ZNF814 1 0.0 Weakly correlated
39 ZNF682 1 28.9 Moderately correlated
40 ZNF791 1 87.0 Weakly correlated
41 ZNF77 1 87.0 Weakly correlated
42 ZNF777 1 319.0 Weakly correlated
43 ZNF716 1 19.6 Weakly correlated
44 ZNF763 1 15.2 Weakly correlated
45 ZNF747 1 43.0 Highly correlated
46 ZNF443 1 19.6 Weakly correlated
47 ZKSCAN2 1 180.0 Weakly correlated
48 ZKSCAN5 1 160.0 Weakly correlated
49 ZKSCAN8 1 160.0 Weakly correlated
50 ZNF101 1 43.0 Highly correlated
51 ZNF124 1 43.0 Highly correlated
52 ZNF189 1 99.0 Weakly correlated
53 ZNF224 1 69.0 Weakly correlated
54 ZNF317 1 99.0 Weakly correlated
55 ZNF334 1 99.0 Weakly correlated
56 ZNF429 1 28.9 Moderately correlated
57 ZNF649 1 28.9 Moderately correlated
58 ZNF445 1 99.0 Weakly correlated
59 ZNF468 1 28.9 Moderately correlated
60 ZNF486 1 8.6 Weakly correlated
61 ZNF496 1 99.0 Weakly correlated
62 ZNF547 1 74.0 Weakly correlated
63 ZNF560 1 43.0 Highly correlated
64 ZNF610 1 28.9 Moderately correlated
65 ZNF616 1 43.0 Highly correlated
66 ZNF641 1 99.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF347 68 43.0 Highly correlated
2 ZNF2 7 99.0 Weakly correlated
3 ZNF793 4 99.0 Weakly correlated
4 ZNF263 3 180.0 Weakly correlated
5 ZNF674 3 99.0 Weakly correlated
6 ZNF766 3 43.0 Highly correlated
7 ZIM3 2 87.0 Weakly correlated
8 ZFP37 2 99.0 Weakly correlated
9 ZNF680 2 28.9 Moderately correlated
10 ZNF610 1 28.9 Moderately correlated
11 ZNF506 1 28.9 Moderately correlated
12 ZNF534 1 19.6 Weakly correlated
13 ZNF479 1 6.4 Weakly correlated
14 ZNF429 1 28.9 Moderately correlated
15 ZNF677 1 99.0 Weakly correlated
16 ZNF736 1 43.0 Highly correlated
17 ZNF468 1 28.9 Moderately correlated
18 ZNF334 1 99.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF2 99.0 Weakly correlated
2 ZNF347 43.0 Highly correlated