ZRdb KZFP & Repeats
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LTR_LTR06

  • Name
    LTR06
  • Repbase
    LTR06
  • Type
    LTR
  • Emergence
    74.0 Mya
  • Dfam Id
    DF0000374
Description :

Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgtgaaatgtgatatacaaaatggcgtcactctggttcagagctctaaaatggagtcgggaagccattctaagaaggactacctgcacgacctgcaaccttgcaaaaaaaacaaaaacaanaacaaaacttgccttgaacctttgaactgggccaaaccgccacgaccacaacatcctggaaaacagctgaatttcgccagcgctgcaactcctgaacagcgacaaccaatgaactatggactcatgtactaagccagccgcctccaccaatgataattctttcaaaacaacttgtgtaatcaccctcagcttccttttaannnnnnnnnaaaaatccctactcccctccctctcttcggaacacaatttggcttctagccgaatctgtgtctcccgaattgcaattcctaagaccccaataaacgccttgtcttactgctttgcagtctggtctttcgcctcttcttggttgaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 7 99.0 Weakly correlated
2 ZNF394 4 99.0 Weakly correlated
3 ZFP37 3 99.0 Weakly correlated
4 ZNF789 3 99.0 Weakly correlated
5 ZNF101 3 43.0 Weakly correlated
6 ZNF766 3 43.0 Weakly correlated
7 ZNF324 3 99.0 Weakly correlated
8 ZNF2 2 99.0 Weakly correlated
9 ZNF558 2 99.0 Weakly correlated
10 ZNF554 2 99.0 Weakly correlated
11 ZNF549 2 87.0 Weakly correlated
12 ZNF18 2 160.0 Weakly correlated
13 ZFP69B 2 99.0 Weakly correlated
14 ZNF792 1 94.0 Weakly correlated
15 ZNF679 1 28.9 Weakly correlated
16 ZNF778 1 74.0 Highly correlated
17 ZNF610 1 28.9 Weakly correlated
18 ZNF563 1 28.9 Weakly correlated
19 ZNF528 1 43.0 Weakly correlated
20 ZNF263 1 180.0 Weakly correlated
21 ZNF169 1 94.0 Weakly correlated
22 ZKSCAN8 1 160.0 Weakly correlated
23 ZFP57 1 87.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF101 1 43.0 Weakly correlated
2 ZNF679 1 28.9 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats