ZRdb KZFP & Repeats
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LTR_LOR1B

  • Name
    LOR1B
  • Repbase
    LOR1b_LTR
  • Type
    LTR
  • Emergence
    74.0 Mya
  • Dfam Id
    DF0000371
Description :

LOR1b has a 4bp target site duplication.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgaaaccgacccaatagtcccatagaactgatgtttncggtttttttggataaacatagaaattgacccttctggtcttaaagcttgannaacttacatttgttttatctgagttccttcctcaggaaancgaccctcaggcctctcaaaaagtatcaaagaactgaaactcaccagatcaccgcatccagacaatgagacgccagacccctcattcatcatgattgcttccttgcccctccctagttcctgttttcctacacattgttacatttcttccctgctatataaacccctagttttagtcggtcagggagatggatttgagactganctcccatctcctcggctgcagcacccgattaaagccttcttccttggcaatactcgtcgtctcagtgattggctttctgtgcggcgagcagcaggacctagaccgaacccctggtgtttcggtaaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF124 219 43.0 Weakly correlated
2 ZNF799 101 43.0 Weakly correlated
3 ZNF382 27 99.0 Weakly correlated
4 ZNF680 23 28.9 Weakly correlated
5 ZNF766 17 43.0 Weakly correlated
6 ZFP57 16 87.0 Weakly correlated
7 ZNF441 14 43.0 Weakly correlated
8 ZNF263 12 180.0 Weakly correlated
9 ZNF597 7 94.0 Weakly correlated
10 ZNF394 6 99.0 Weakly correlated
11 ZFP37 5 99.0 Weakly correlated
12 ZNF479 5 6.4 Weakly correlated
13 ZNF490 5 43.0 Weakly correlated
14 ZNF528 5 43.0 Weakly correlated
15 ZNF2 5 99.0 Weakly correlated
16 ZNF679 5 28.9 Weakly correlated
17 ZIM3 5 87.0 Weakly correlated
18 ZNF610 4 28.9 Weakly correlated
19 ZNF558 4 99.0 Weakly correlated
20 ZNF197 4 99.0 Weakly correlated
21 ZNF18 4 160.0 Weakly correlated
22 ZNF324 4 99.0 Weakly correlated
23 ZNF735 4 28.9 Weakly correlated
24 ZNF793 4 99.0 Weakly correlated
25 ZNF101 3 43.0 Weakly correlated
26 ZNF705B 3 28.9 Weakly correlated
27 ZNF589 3 28.9 Weakly correlated
28 ZNF506 3 28.9 Weakly correlated
29 ZNF723 3 15.2 Weakly correlated
30 ZNF486 3 8.6 Weakly correlated
31 ZFP69B 3 99.0 Weakly correlated
32 ZNF257 3 0.0 Weakly correlated
33 ZNF175 3 94.0 Weakly correlated
34 ZNF251 2 94.0 Weakly correlated
35 ZNF674 2 99.0 Weakly correlated
36 ZNF41 2 99.0 Weakly correlated
37 ZNF169 2 94.0 Weakly correlated
38 ZNF347 2 43.0 Weakly correlated
39 ZNF534 2 19.6 Weakly correlated
40 ZNF695 2 28.9 Weakly correlated
41 ZNF182 1 99.0 Weakly correlated
42 ZNF224 1 69.0 Moderately correlated
43 ZNF202 1 160.0 Weakly correlated
44 ZNF705D 1 28.9 Weakly correlated
45 ZNF264 1 99.0 Weakly correlated
46 ZNF786 1 99.0 Weakly correlated
47 ZKSCAN8 1 160.0 Weakly correlated
48 ZNF100 1 28.9 Weakly correlated
49 ZNF442 1 43.0 Weakly correlated
50 ZNF274 1 99.0 Weakly correlated
51 ZNF287 1 99.0 Weakly correlated
52 ZNF549 1 87.0 Weakly correlated
53 ZNF317 1 99.0 Weakly correlated
54 ZNF320 1 28.9 Weakly correlated
55 ZKSCAN1 1 160.0 Weakly correlated
56 ZNF483 1 99.0 Weakly correlated
57 ZNF468 1 28.9 Weakly correlated
58 ZNF44 1 43.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF124 217 43.0 Weakly correlated
2 ZNF799 99 43.0 Weakly correlated
3 ZFP57 10 87.0 Weakly correlated
4 ZNF680 5 28.9 Weakly correlated
5 ZNF528 4 43.0 Weakly correlated
6 ZNF441 4 43.0 Weakly correlated
7 ZNF735 4 28.9 Weakly correlated
8 ZNF479 3 6.4 Weakly correlated
9 ZNF263 3 180.0 Weakly correlated
10 ZIM3 2 87.0 Weakly correlated
11 ZNF793 2 99.0 Weakly correlated
12 ZNF347 2 43.0 Weakly correlated
13 ZNF382 2 99.0 Weakly correlated
14 ZNF2 2 99.0 Weakly correlated
15 ZNF766 2 43.0 Weakly correlated
16 ZNF257 2 0.0 Weakly correlated
17 ZNF723 1 15.2 Weakly correlated
18 ZNF589 1 28.9 Weakly correlated
19 ZNF483 1 99.0 Weakly correlated
20 ZNF468 1 28.9 Weakly correlated
21 ZNF264 1 99.0 Weakly correlated
22 ZNF490 1 43.0 Weakly correlated
23 ZNF182 1 99.0 Weakly correlated
24 ZNF287 1 99.0 Weakly correlated
25 ZNF506 1 28.9 Weakly correlated
26 ZNF324 1 99.0 Weakly correlated
27 ZNF534 1 19.6 Weakly correlated
28 ZNF197 1 99.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZFP57 87.0 Weakly correlated
2 ZNF124 43.0 Weakly correlated
3 ZNF799 43.0 Weakly correlated