ZRdb KZFP & Repeats
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LTR_LOR1A

  • Name
    LOR1A
  • Repbase
    LOR1a_LTR
  • Type
    LTR
  • Emergence
    74.0 Mya
  • Dfam Id
    DF0000370
Description :

LOR1a has a 4bp target site duplication.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgaaaccggcccaattgtcccatagaactgatgtttatggtttctttgaataaacatagaaattgaccctcccagtcttaaaacttgagaaagttacatttgtcttatctgagttcctttctcaggaaaccaaccatcaggcctcccagatagtatcaaggaactgaaacttaccagatcaccgcatctggacaatgagacgccagacccctcacccgtcatgattgcctaaccgaccacctgcttcctgttgaccaactcctcttccttacccctccctaattcctgttttcccgcacgtggttacatttcttccctgctatataaacccctaattttagtcggtcggggagatggatttgagactgatctcccatctcctcggctgcagcacccgattaaagccttcttccctggcaatactcgttgtctcagtgattggctttctgtgcggcgagcagcaggacctagaccgaacccctggcgtttcggtaaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF124 128 43.0 Weakly correlated
2 ZNF799 87 43.0 Weakly correlated
3 ZNF486 27 8.6 Weakly correlated
4 ZNF382 27 99.0 Weakly correlated
5 ZNF441 25 43.0 Weakly correlated
6 ZNF766 23 43.0 Weakly correlated
7 ZNF254 18 43.0 Weakly correlated
8 ZNF75D 16 94.0 Weakly correlated
9 ZNF680 9 28.9 Weakly correlated
10 ZFP57 8 87.0 Weakly correlated
11 ZNF793 8 99.0 Weakly correlated
12 ZNF263 7 180.0 Weakly correlated
13 ZIM3 7 87.0 Weakly correlated
14 ZNF597 6 94.0 Weakly correlated
15 ZNF679 6 28.9 Weakly correlated
16 ZNF479 5 6.4 Weakly correlated
17 ZNF394 5 99.0 Weakly correlated
18 ZNF589 5 28.9 Weakly correlated
19 ZNF347 4 43.0 Weakly correlated
20 ZNF317 4 99.0 Weakly correlated
21 ZNF701 3 28.9 Weakly correlated
22 ZNF320 3 28.9 Weakly correlated
23 ZNF547 3 74.0 Highly correlated
24 ZFP37 3 99.0 Weakly correlated
25 ZNF44 3 43.0 Weakly correlated
26 ZNF585B 3 99.0 Weakly correlated
27 ZNF101 3 43.0 Weakly correlated
28 ZNF490 2 43.0 Weakly correlated
29 ZNF534 2 19.6 Weakly correlated
30 ZNF677 2 99.0 Weakly correlated
31 ZNF33A 2 99.0 Weakly correlated
32 ZNF28 2 28.9 Weakly correlated
33 ZNF558 2 99.0 Weakly correlated
34 ZNF257 2 0.0 Weakly correlated
35 ZNF175 2 94.0 Weakly correlated
36 ZNF251 2 94.0 Weakly correlated
37 ZNF202 2 160.0 Weakly correlated
38 ZNF197 2 99.0 Weakly correlated
39 ZNF641 1 99.0 Weakly correlated
40 ZNF92 1 28.9 Weakly correlated
41 ZNF584 1 99.0 Weakly correlated
42 ZNF675 1 8.6 Weakly correlated
43 ZKSCAN8 1 160.0 Weakly correlated
44 ZNF735 1 28.9 Weakly correlated
45 ZKSCAN5 1 160.0 Weakly correlated
46 ZKSCAN1 1 160.0 Weakly correlated
47 ZNF823 1 43.0 Weakly correlated
48 ZNF8 1 99.0 Weakly correlated
49 ZNF182 1 99.0 Weakly correlated
50 ZNF436 1 180.0 Weakly correlated
51 ZNF18 1 160.0 Weakly correlated
52 ZNF248 1 99.0 Weakly correlated
53 ZNF26 1 99.0 Weakly correlated
54 ZNF274 1 99.0 Weakly correlated
55 ZNF284 1 43.0 Weakly correlated
56 ZNF287 1 99.0 Weakly correlated
57 ZNF140 1 99.0 Weakly correlated
58 ZNF41 1 99.0 Weakly correlated
59 ZNF567 1 99.0 Weakly correlated
60 ZNF133 1 99.0 Weakly correlated
61 ZNF442 1 43.0 Weakly correlated
62 ZNF468 1 28.9 Weakly correlated
63 ZNF483 1 99.0 Weakly correlated
64 ZNF528 1 43.0 Weakly correlated
65 ZNF549 1 87.0 Weakly correlated
66 ZNF557 1 15.2 Weakly correlated
67 ZNF559 1 74.0 Highly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF124 127 43.0 Weakly correlated
2 ZNF799 83 43.0 Weakly correlated
3 ZNF766 10 43.0 Weakly correlated
4 ZNF75D 10 94.0 Weakly correlated
5 ZNF441 8 43.0 Weakly correlated
6 ZFP57 4 87.0 Weakly correlated
7 ZNF347 4 43.0 Weakly correlated
8 ZNF263 4 180.0 Weakly correlated
9 ZNF793 4 99.0 Weakly correlated
10 ZIM3 3 87.0 Weakly correlated
11 ZNF680 3 28.9 Weakly correlated
12 ZNF44 3 43.0 Weakly correlated
13 ZNF254 2 43.0 Weakly correlated
14 ZNF677 2 99.0 Weakly correlated
15 ZNF382 2 99.0 Weakly correlated
16 ZNF701 1 28.9 Weakly correlated
17 ZNF483 1 99.0 Weakly correlated
18 ZNF534 1 19.6 Weakly correlated
19 ZNF28 1 28.9 Weakly correlated
20 ZNF284 1 43.0 Weakly correlated
21 ZNF41 1 99.0 Weakly correlated
22 ZNF735 1 28.9 Weakly correlated
23 ZNF479 1 6.4 Weakly correlated
24 ZNF320 1 28.9 Weakly correlated
25 ZNF140 1 99.0 Weakly correlated
26 ZNF287 1 99.0 Weakly correlated
27 ZNF567 1 99.0 Weakly correlated
28 ZNF589 1 28.9 Weakly correlated
29 ZNF679 1 28.9 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF124 43.0 Weakly correlated
2 ZNF441 43.0 Weakly correlated
3 ZNF75D 94.0 Weakly correlated
4 ZNF799 43.0 Weakly correlated