ZRdb KZFP & Repeats
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LTR_LOR1-INT

  • Name
    LOR1-INT
  • Repbase
    LOR1I
  • Type
    LTR
  • Emergence
    74.0 Mya
  • Dfam Id
    DF0000372
Description :

LOR1-int is an internal sequence of a retrovirus-like elements with LOR1LTRs. This retrovirus is a member of the non-autonomous MER4-group ofelements. LOR1-int PBS is related to Glu-tRNA. Several subfamilies existwith large deletions and insertions with respect to the currentconsensus.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
gattttggttccctgaccgggaacgcgttgctcgtggctcggctgccgcgggccgggagagtctcagaagccctcctaagcagctgcccgacccntttttggccggaggtgggtttcggtctctctctctctggccccgccgctgccggccccaaccgcgttcctgattgcctaggaagaacagcctttgaaatttgacatctgcgtccggataggtgagtgtcctttgtgggtaccagacagcgggatctgctcctctcaatttgggaaattctaaaggaatttccgtttgcaggttgaacaagcccaaccgacggagagaggaaagcaccccgactgtttcagtttggacactcttggggcttgtttgttgctgcagcagttggattgtgttttggtgattgtttgttgtgtgtgtgtcgatatagtcatgggaaattagaattcgataaactgatattcttttgtaatactgtttggccccaatattctttggaatctggagnnnnncggncnntccgcgggnntnattttgctgttgaatgggaaagcgggatggagttccgtgtatccaggcttttatgctgctgttctaagcagggtcgggcctggttagtacgtgatgttcttctgtggtgctgtttggccccagtgttctttggagtctggggaggtttggcctttaaaaatcaaactgccatggaaactgctttacccaaaattttggttcacagccttcactggattacctatcggggcaaacaaagtttagccatgtgaacatgttcgtaaaccggtgagtttgtattgctatctcatggctagagttccgaggtaaaagctattggatctttgtntgtgtgtggtgtatacatgtttagatgtgtttatgtgtatgtacatttatngttatatgttgtgtctaccaaattggcttataaataaaagagcactcataaattaagtaaataagtccaagcgnttttcaagttcacgtgacttaagtaaatctttaataaacaagctggctttaaaattattggtaaaataaaaatagaaatgtcttcagaattgtcagcatacatttttgtctgggttttatatttgtctctgctagatattttaaggtgtcagggtttggcatagaaggttataaaactataaacccagccaaaacagaatgatctttgtgtgatttttttgataaataagactaatttaatattgttggtttaatgaaaacagctgaatcttctgagttattggcgaaaatacccatgtatttaactttaagttcttacttaggtgaacacctgatattcacaggctataaaaatggttaacaaggaaataactttaaatgatgactagctttgtctaatatctcagttttcanaagtaatctagataaactgttaaaaatgaanaaattgagtanatgtaaatgggataaatgcttgtaggtgaacttttcgtgtaatttaaaatcttaaaattatttttgatgctcattggatgtctgggtcatttccaattaagaaagggttatgatatggggaaacatgtttctaaaaattgtggaatgttctcatctataaaatgctaatatctgatagacagttcaggatttcttgcttcctaggttttcactaaaatttaaggttactaagaataagaattctagttaatatataattctgtatataaaatgtgccaaagaagatgtgttcttattgagaaaaagaataattttgtctaattcagaagttatctaaaggttaattcaaattatggacttgaaaaggttatttatgaaacaaggtagaaaggaaccagtaagtaggggagagagatgtgaagaaagttatggatatgaagatgtatttttggtaaggaaggttataaagaaaagaataattttgtatgagaaaggatcttgtatggtaaatttttgtcctaagtaaaatgactggttatttaaaaaagaaaatntaggacaaancagaaagtccaagcatgtcgtagatggtctgtgtaagtcatatgtgtttttcctgtttctctgtgtgtctatcttcatgcacatacagagaaaatagaaagttgaaaaagtttagataataaaatattctttaaaacctgatagaaaattggagaaatttggctaattaacattgctcatagttaaagctcttagtcttgatgaaggtaaaataagaaatattgtaaagaaatacattggcagtttggcaattcttttttaatatagttaagcatgaagccagatttagcgtggagccaaatttcacatanatgcttgcattgctttgtttcacactgtatttgctattctgcatagatagtactagcactaaagtacttactggtcatgtgcctaaagtgaatttcttaattgcacaaaatgtatagtggtattggtggacttaaagacattaanttgtgtaccaggaacaaaatatccatcatgtgttttttttaggctctgggtaacactgtagcctccaaggtaaactgagtaggagaaaaattnggggttggtttcctgtttatttgtttttgcttctaattttcatttatttgctgtttgttctcctttgggttttacttatatatacatatataaaaccattgatgttttttagtttctaatggaaggcttttatttggttctatgaatagtcattttgtttcctatgcatttccaacaattcatcatttgttctatttatctaaaattcctaagctacctttgtcaagcctgcaaaaattgatagagcacaccagccatttaaaatttgattggttttgcttacctctgatgatctagagagctacaagagctttaaggttcctggcaaaaaaaaaataaataaaagacttatttttataagttctgaacagaaatagtacattatttattttgttatttggaaaagtaggtgagagtagaaatgtttaaatggtgtttatttccaaggtaattcaattcaatcaataatttgagttggtttcagatcttttcctttaggtaatgaggaaaaactgtgatatgggtacaaagttttaatgttcaggaaagattggccttgtccttaaggaaattatattgattgggatttctctcaaactantttagttgtgtttaccattattaaaattaagtgacattcacttggattaagtagtaataaaaatgtgagactttctagtgatttttgatcccaagccgtttatcactgatgggccttcatgtgtgtacttgaaaacaaaatatgtacaagtgttgcactggtttgaagattttagtggtgaaagttacctaatcagttgtcagtactgtatctagaaaccaatcttggaaatgtgtgatgatgctcttttaaaatagctgaaaagaaattattgtgtgcttgttcttactttgtccttgttttgttgtatagtatttaagtgaaaggagattatttatcctcatactgaatttccaaaactgatatttgcatttaccattttttaaatgatggagagaaaagttagttgtcttactttgataagtttggcataggacctatcacatttttgatgcttttggtcacagttctgtcactagaatgctagcaattagacatatgcaangagtaacctaaccactttaatacagtggtttgaagtgctgcaggcagtaactactagacaccaaatcacagtgttttaatttgtgacatgttagagagaatgataggactttctgcagtataaatatcctattaactaatccttgtgctgttaagttacagggctttgactcctgggtctgaaaaaggcaccgactcctgctaaatcttgaacattgacaccagtcaaagcctcgtcttcagacccgggagaaggtgacaatcaaaatgaactgctttcgtgagacacagggccagaaattaaaactattcaatccctctaggcccagggactatcgcggaagaggtgggcgcgtgagattgtaagggccgattttgagggataagattagttcagagtttttctataaattaaacattaatatcaaaagcacactgatgcaaggccagcgtctgggcccntgtgtcggaataacagggttttcttggagcattgatctgctctttaatagaaaattgtaaaaggttataaaaggtttatggaaatcttaccttatggtcaaactgattaaaattagatagatttgtttataaggttttattaaaattagctttaacattaataatacaccatacaaaggtaaaatttggttttctcttttgaacaaaattttcgtgtaatattaagagataataaaagatttttgtttaccttttgagtaaactgcaggaaaaaaagaggggggagagacagatttagttggcctcatgctgtctttattaggtcttattgtttgggaaactgagtctcctctctatcaaagagtaaacgtttttgttttatcattttggctaaatgaatgactattttatagtgacctgtgatcctattttgtgatatcaagtgtcttaaacctttgatatttgacaaactttccaaaagcaaaatttcaagttctaaattcagtctttttgacctcaaactaacttttttggatattaggttccctgaagtccaagagagacatattaggcttatttggtatgttagaattatacaggaagcattgtcaaatntgaggtggtgtttaactttctttgggttatatttatatagatgtgttgttaatatgtgttccaggattgtatgagattcctaaaattctgatatgtcttaatatatgttgtcagtaataattatgattattatgttaaattgttgtatgccacagaaataaccaaatttccttgtcaactgtgtctttaactatggctgtcctaagacttttgtcatccacaattgttgttttgctttgatccttctcaaaaagtgacttataatcagctacagtccagggcttgcttctttgggggagttcatgaaaaggactcttgaatgcaggtttctgataactttggagattgtgccattggattagagagaaaacttccagggcnctaattgaaaggctgatgtgttcataaagattgctaacccaatatgaagcagagcaggagttgattgcatggactgaactaatnggaggactgaaataatttttatggctttttttcgtttgaaacattgctgattctttttgttttgtttttcagagtctggagaacttttttccttttgagctatttatagcctttaacaattgagtagagtatactcttgtaaacagaatttgaggcatatttctctctctctgcctaatttctccagaattcgtaaactatttgtgaatattcttaattcatggcaatgtgnttgtttgcatangttcaataagaatctgttttcttttataacgggacacagttggaggaactggttattttcccagggctttgactgaaatggcatgttttcagatatgagcagactgctttgagaaattgaggttgactttatagagccgatgaaagccccttggaaagactggcctcgtaccttgtctacgcagttcctttgcagggttcctggcctgtggtaagtagagaatgtcactttctgacaggcccaggaacctcaagttgttttgggacctcgagaagagaggaattcacccaattcatacaggtatctgcaggcgcagatggatccttggctgggctcgagaggcctttgaaagtcgagtctgaaatgccttgtgagaggttccagcaaagccaatttaggagagcctatatggacaatgattcttgctgcactttgtgtgggtaatcaggccaagtatatgggactgaagcttattttgcaggtaggttggtcctgctgtgatttgtctttggtggaagtgggggactggagagagaaagattgtgtttcagaagaaaactatagtattagattaacctttgattcctgggtggccacgtggtcacccatggtatggagctgcagctgtgctgcattcagttattaaaggtaaagttaccagtggaatttagagatggattcaactcctggggagttggttcctggatgcataaggaaatgcaaactaataaggaaaaagcgaaatattcaatcccttngttattgttatctataatagctaaaatgaaagtaagagagtgctgggttgggccttgaggctggaccaagctcagatgtgggtctgtctgagctcagatcactagcctcaaggctacccacaaaaggggaaattatgccaggcaccaaaagtacctctgagacctgtggtttccaagaaggtagtcaatgtgggggaaagggcaaaaccaagtaactactgaaaccagagggtataatgtgaaggaattgttccattttgtagattggtatcatcagcttcctgaggaacctttactaaaatggattgtgagagtaactaatttgggagcaatgtctttggttttaaatgctgcagagtggaagagcatgttttggtgatgcaggacccacggctcacnattgaacaatcgcagatggatgtatatgtaaccagacacacaggaggttattcccgagagaacagccagcctggtggactggataaaagccactgtaagatctgtttaccctgagaagaggaactgcccaactccacctatcaatgccaagtggagcaccccagatgaagcagctgatatgctttcgtatgcaagccatgggggactggctttatgatgacaggaatattaaccttactttttggcttttggtttttggctcttatgttgcttaaagggttttaagggttaatgagtgcctgcccacctccattcccgtctggcctagaacgtttaattggctataagtcttttgactctaagtcccttggccataggggtcccaccgagggacangatggacccggggcaggtagccacaccaccccggcaacgatatgggacaaaataaaagcttggccatcgatgctgcctctggcatatcttgaccaaaaggggnnaaactnaaannaaaatcnnnnnnnnnnnatcgannnnnnngaccganncgnnnncgnnnnnnncccgnttgccaagagacaaatcttacctgggaaaaggtcttgccccttgccctgctgaggatacgggtagcccccagaagtgggttggctcttagccccttcgaaatgtatgggagaccatttctctaccagactccctgncacttgaggatttttcctcccccgaaacagaagctagatcatatataaaacaattaggaaatatattaactagtctctctgagtttgcttccaacaggctccagttccctacggacgtgcctctccactctttgaaaccgggggaccaagtcctgctgaagacctggaaatcccaccaggctgaagaccagctgcaaccacaatgggtcagcccttttgaggtgctgctgaccacccactcatctgtcaagttagccggtgttaagccgtggattcaccatactcgggtaaaaccagtccctctgggatccctccaggggaaacagtcatggtcttgtgaaccctcggacggccttaagttaatattcaaagcccagccaaagaccctagataagaaatcataaagggaacatgcgcttttcaggttgttattgttctccccnaaaccacggctttttgcatgcgggatgtaatgaatcaggaagacttttggtaggcttaggattgttctcttggattccccaggggatccactccatattctttggtattttaaaatttgggttatctatgttattaatcatcctagttcaatgtggcttaaaatgttgttctaaaaccanaataaaagtacccagatcatggtgctccaacaagccggatgccgaccaggtactcgtgagtacttccaattacaggngtgacgttttcattcctcatcattatcccacgacgcccctcctcagcatgaagcagccagaaagatcgacgaccagattccccatgattgaggaattgataaatagaaaggggggac
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 72 99.0 Weakly correlated
2 ZNF680 42 28.9 Weakly correlated
3 ZNF486 26 8.6 Weakly correlated
4 ZIM3 25 87.0 Weakly correlated
5 ZNF43 21 43.0 Weakly correlated
6 ZNF766 16 43.0 Weakly correlated
7 ZNF124 15 43.0 Weakly correlated
8 ZNF610 15 28.9 Weakly correlated
9 ZNF547 13 74.0 Highly correlated
10 ZNF324 11 99.0 Weakly correlated
11 ZNF490 11 43.0 Weakly correlated
12 ZNF394 10 99.0 Weakly correlated
13 ZNF558 10 99.0 Weakly correlated
14 ZNF554 9 99.0 Weakly correlated
15 ZNF317 9 99.0 Weakly correlated
16 ZNF793 9 99.0 Weakly correlated
17 ZNF506 7 28.9 Weakly correlated
18 ZNF101 7 43.0 Weakly correlated
19 ZNF799 7 43.0 Weakly correlated
20 ZNF549 6 87.0 Weakly correlated
21 ZFP57 6 87.0 Weakly correlated
22 ZNF18 5 160.0 Weakly correlated
23 ZNF534 5 19.6 Weakly correlated
24 ZNF679 5 28.9 Weakly correlated
25 ZNF701 5 28.9 Weakly correlated
26 ZFP37 4 99.0 Weakly correlated
27 ZNF584 4 99.0 Weakly correlated
28 ZNF485 4 94.0 Weakly correlated
29 ZNF2 4 99.0 Weakly correlated
30 ZNF133 4 99.0 Weakly correlated
31 ZNF248 4 99.0 Weakly correlated
32 ZNF597 3 94.0 Weakly correlated
33 ZNF705B 3 28.9 Weakly correlated
34 ZNF140 3 99.0 Weakly correlated
35 ZNF320 3 28.9 Weakly correlated
36 ZNF589 3 28.9 Weakly correlated
37 ZNF585A 3 99.0 Weakly correlated
38 ZNF175 3 94.0 Weakly correlated
39 ZNF182 3 99.0 Weakly correlated
40 ZNF230 3 28.9 Weakly correlated
41 ZNF251 3 94.0 Weakly correlated
42 ZNF263 3 180.0 Weakly correlated
43 ZNF479 3 6.4 Weakly correlated
44 ZNF337 3 43.0 Weakly correlated
45 ZNF28 3 28.9 Weakly correlated
46 ZNF274 3 99.0 Weakly correlated
47 ZNF264 3 99.0 Weakly correlated
48 ZNF257 2 0.0 Weakly correlated
49 ZNF8 2 99.0 Weakly correlated
50 ZNF878 2 43.0 Weakly correlated
51 ZFP28 2 99.0 Weakly correlated
52 ZNF331 2 94.0 Weakly correlated
53 ZNF563 2 28.9 Weakly correlated
54 ZNF440 2 28.9 Weakly correlated
55 ZNF197 2 99.0 Weakly correlated
56 ZNF519 2 19.6 Weakly correlated
57 ZNF816 1 28.9 Weakly correlated
58 ZNF735 1 28.9 Weakly correlated
59 ZNF736 1 43.0 Weakly correlated
60 ZNF765 1 8.6 Weakly correlated
61 ZKSCAN8 1 160.0 Weakly correlated
62 ZNF778 1 74.0 Highly correlated
63 ZNF792 1 94.0 Weakly correlated
64 ZKSCAN1 1 160.0 Weakly correlated
65 ZNF529 1 99.0 Weakly correlated
66 ZNF707 1 74.0 Highly correlated
67 ZNF823 1 43.0 Weakly correlated
68 ZNF845 1 28.9 Weakly correlated
69 ZNF850 1 28.9 Weakly correlated
70 ZNF468 1 28.9 Weakly correlated
71 ZNF92 1 28.9 Weakly correlated
72 ZNF723 1 15.2 Weakly correlated
73 ZNF716 1 19.6 Weakly correlated
74 ZNF705D 1 28.9 Weakly correlated
75 ZNF441 1 43.0 Weakly correlated
76 ZNF12 1 99.0 Weakly correlated
77 ZNF684 1 99.0 Weakly correlated
78 ZNF202 1 160.0 Weakly correlated
79 ZNF135 1 94.0 Weakly correlated
80 ZNF677 1 99.0 Weakly correlated
81 ZNF674 1 99.0 Weakly correlated
82 ZNF669 1 43.0 Weakly correlated
83 ZNF641 1 99.0 Weakly correlated
84 ZNF33A 1 99.0 Weakly correlated
85 ZNF354C 1 99.0 Weakly correlated
86 ZNF141 1 43.0 Weakly correlated
87 ZNF568 1 99.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF43 20 43.0 Weakly correlated
2 ZIM3 13 87.0 Weakly correlated
3 ZNF680 6 28.9 Weakly correlated
4 ZNF793 4 99.0 Weakly correlated
5 ZNF133 3 99.0 Weakly correlated
6 ZNF337 3 43.0 Weakly correlated
7 ZNF534 3 19.6 Weakly correlated
8 ZNF485 3 94.0 Weakly correlated
9 ZNF701 3 28.9 Weakly correlated
10 ZNF101 3 43.0 Weakly correlated
11 ZNF382 3 99.0 Weakly correlated
12 ZFP57 2 87.0 Weakly correlated
13 ZNF766 2 43.0 Weakly correlated
14 ZNF506 2 28.9 Weakly correlated
15 ZNF597 2 94.0 Weakly correlated
16 ZNF585A 2 99.0 Weakly correlated
17 ZNF264 2 99.0 Weakly correlated
18 ZNF490 1 43.0 Weakly correlated
19 ZNF140 1 99.0 Weakly correlated
20 ZNF684 1 99.0 Weakly correlated
21 ZNF584 1 99.0 Weakly correlated
22 ZNF479 1 6.4 Weakly correlated
23 ZNF141 1 43.0 Weakly correlated
24 ZNF274 1 99.0 Weakly correlated
25 ZNF202 1 160.0 Weakly correlated
26 ZNF175 1 94.0 Weakly correlated
27 ZNF716 1 19.6 Weakly correlated
28 ZNF677 1 99.0 Weakly correlated
29 ZNF440 1 28.9 Weakly correlated
30 ZNF8 1 99.0 Weakly correlated
31 ZNF589 1 28.9 Weakly correlated
32 ZNF230 1 28.9 Weakly correlated
33 ZNF558 1 99.0 Weakly correlated
34 ZNF248 1 99.0 Weakly correlated
35 ZNF197 1 99.0 Weakly correlated
36 ZNF735 1 28.9 Weakly correlated
37 ZNF12 1 99.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZIM3 87.0 Weakly correlated
2 ZNF680 28.9 Weakly correlated