ZRdb KZFP & Repeats
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LINE_L5

  • Name
    L5
  • Repbase
    L5
  • Type
    LINE
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000367
Description :

The substitution level observed for L5 in the boreoeutherianreconstruction (borEut13) is ~35%. The C-terminal half of the L5 polORF is located at ~6-2072.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
taaaccannatagattcaaatanctgaaaggnttggcanaattattacagtaaaatnttcgaggttctttcttaggnatgtagtcaaaattttntaataaacataacnaacttgcttcagnagactccaattaccacaggagagatnaaaggtctcagtgcatttctttcctcgggcaaggcaccaagggaggntgtgttgccnccagagatatttaaacaatttcctgacnggtgggcnccaattctggctaaattnttcacacagattagcaaagcangggtttttcctgctgagtggaaacagaatattgtcttcccaatatttaaaaaggataacaaacaggacccgggtaactatcgcccaataagtctcttngatgtagcctccaagttntatggcaaacacntattgaacangctagaagnctgngagaaatccaatagtntcatccaccctgaacaagctggttttagaagaggacaatcaacaancgaccantgtataactctccatnatntagtanaacgaagnatatggagccctnntaaataccntcgcgctncatttgtagatctagcngcagcctttgactcggtcaacagaaaccggctctggcacaaattanctggcactaacatcgacaggcgtctcttatttctgcttcagcagcttcacagcgacacgaccgccagaataaaagtagggatttccggttctttgacagagncgatctctattgaccaanggntnaagcaagggtntntcttagccccacttctattcgatctttaccttaatgacataattaaaaggttatctggcccagaattttttcttctctcaattgactctcgcaaaatctctatccttctgtatgccgacgatacggtcctactatcctttattatttacgtaggtctcaaaaagctactgtccaaactctatgatgcgttaaaagaggaatctttaaatattaattattcaaaaaccgaagtgatgatttttagaaagaaacccagcaantttcgatgggctataaataatcagccgatcgatcagtgctgggtatttaaatatctaggcgtttattttaatgaaacgctttcctggaaatcacacaccaagatagtaaaggccacagtcactaaaaccataggagctatactgaaattctatcgcacnaaaggtggccacttaattgatcctgcnctaaaactcttccatagcaaagcagtggcccaaattctttntggagcagaggtntggggctgggacgatacacagattacaaatctggaaaccttacaaaacagttttcttaaaaacatcttacatttgccccctagtaccccggcagctctaatccgggcagaggtcggactcccctcaattagagcccgtgttcatgtggccataatcaaatacttaaagaaactgaaagtttcccctgagaaccatctgtcaaaattgtgctatgtccagctacagaactgtaaggactgggtttataaataccatagactgcttcaactctattccatctctgnggactcacaggtcatttctcaagcaggcaccaatctacgngactggatcttcgatcaaaacgctntgtccgacaggctggctattttagacacaaatttttccaggcggtataggataattaaaagtgatcacagtagatcattctacctggtcaatcttacctttcctaagctcagacaagcctttatggcaatctgtttccaaaccatgcccactgccatgatcgaaggcagataccgccggactcctctagcccagcgaacctgtatctgtggagcccctgagctagaggaccttccacattaccttttattctgccccgtgtatctggaaccacgccagaagtttcttggggtaattttaactagtattcactctagaacaataccagaaaaggtaagttacttactgtccgacacggacacgtacgtaacttttagagtctcttnttttgcactggccgcttcaaaaatcagagctaaagctattttagacactacagttaaaacgacacggtgatgtattggtctgatgattccttttatgaaatcaactctgaaatgttacctatttttacgctcagaaactcactctaactttgttctgttttgatctttataacttattttaaagatcacattgtacctactctttgctctgtaagtcttgcaatggcctttggccaaaagcaataaaattctgacctgacctg
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 33 99.0 Highly correlated
2 ZNF394 12 99.0 Highly correlated
3 ZFP37 8 99.0 Highly correlated
4 ZNF18 7 160.0 Weakly correlated
5 ZNF2 7 99.0 Highly correlated
6 ZFP69B 6 99.0 Highly correlated
7 ZNF324 6 99.0 Highly correlated
8 ZNF263 6 180.0 Weakly correlated
9 ZKSCAN1 5 160.0 Weakly correlated
10 ZNF101 5 43.0 Weakly correlated
11 ZNF610 4 28.9 Weakly correlated
12 ZNF317 4 99.0 Highly correlated
13 ZNF92 3 28.9 Weakly correlated
14 ZNF701 3 28.9 Weakly correlated
15 ZNF589 3 28.9 Weakly correlated
16 ZNF558 3 99.0 Highly correlated
17 ZIM3 2 87.0 Moderately correlated
18 ZNF585B 2 99.0 Highly correlated
19 ZNF554 2 99.0 Highly correlated
20 ZNF549 2 87.0 Moderately correlated
21 ZNF534 2 19.6 Weakly correlated
22 ZNF528 2 43.0 Weakly correlated
23 ZKSCAN8 2 160.0 Weakly correlated
24 ZNF705B 2 28.9 Weakly correlated
25 ZNF723 2 15.2 Weakly correlated
26 ZNF735 2 28.9 Weakly correlated
27 ZNF257 2 0.0 Weakly correlated
28 RBAK 1 99.0 Highly correlated
29 ZNF679 1 28.9 Weakly correlated
30 ZNF75D 1 94.0 Moderately correlated
31 ZNF597 1 94.0 Moderately correlated
32 ZNF766 1 43.0 Weakly correlated
33 ZNF778 1 74.0 Weakly correlated
34 ZNF792 1 94.0 Moderately correlated
35 ZNF8 1 99.0 Highly correlated
36 ZNF133 1 99.0 Highly correlated
37 ZNF135 1 94.0 Moderately correlated
38 ZNF506 1 28.9 Weakly correlated
39 ZNF479 1 6.4 Weakly correlated
40 ZNF471 1 94.0 Moderately correlated
41 ZNF433 1 43.0 Weakly correlated
42 ZNF429 1 28.9 Weakly correlated
43 ZNF140 1 99.0 Highly correlated
44 ZNF175 1 94.0 Moderately correlated
45 ZNF354C 1 99.0 Highly correlated
46 ZNF197 1 99.0 Highly correlated
47 ZNF320 1 28.9 Weakly correlated
48 ZNF202 1 160.0 Weakly correlated
49 ZNF222 1 43.0 Weakly correlated
50 ZNF251 1 94.0 Moderately correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF723 2 15.2 Weakly correlated
2 ZNF382 2 99.0 Highly correlated
3 ZNF534 2 19.6 Weakly correlated
4 ZIM3 1 87.0 Moderately correlated
5 ZKSCAN1 1 160.0 Weakly correlated
6 ZNF317 1 99.0 Highly correlated
7 ZNF585B 1 99.0 Highly correlated
8 ZNF197 1 99.0 Highly correlated
9 ZNF528 1 43.0 Weakly correlated
10 ZNF92 1 28.9 Weakly correlated
11 ZNF101 1 43.0 Weakly correlated
12 ZNF554 1 99.0 Highly correlated
13 ZNF735 1 28.9 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats