ZRdb KZFP & Repeats
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LINE_L4_C_MAM

  • Name
    L4_C_MAM
  • Repbase
    No find
  • Type
    LINE
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000366
Description :

L4_C_Mam is one of three ~80% similar L4 subfamilies. The presumescoding regions: ORF1 (~21-1631), and ORF2 (~1632-4955). These proteinsare similar to those of RTEX-1_ACar in lizards and L5 in ancientmammals. The substitution level found in the Laurasiatherianreconstruction is ~40%.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tttcatttttattcttttaaatgggaaacaggaagcgccggcgtaagggagacagtcctgnagatagcccgtgccccaaacaagggaggctagatgtcccttttcctccggttagctccgcagaggcccttttagcgcctcgaaacagatctcccattccggtcccagatggtccccttgacctaaaagacagccctctggggaaggctgacagccccacacctaaaatcactgctcctggcaactcagcagagctacaggccaaaatttccccccaggagagcaataagcccagccccaaagacagctcaggagaactgctggaacaacgctgctatcttatttctaggaccattcagtccctatatgaggaaatccgtgaactaaaatccatggtctccaacgtacataactttctgacatcggccaagcctcccgancagcccatatcacggactgagaaggaagtaggtgggaagtcatacccagggagggcccctcaatgtaatccctccacaggtttaattctagaaaataaccagatggtcctgaatctttctataagactttttggaaggaggcacaatagaggatccttaactaagttattagaatcccttttatatcggcctgcctctagaataaacctgantaaactgatccatctcccatcaaggcagggcttcaaaaggattctcttantgtgcagttcttcccaactcccttctctcatcatgaaagccaaggagaagttggctagggttgggattattcccaacagggtctttaggacagaggcggctgtacccctgttaggttacccctctttacaaaagacagagcccaaaacctcctttgacaaccaaggcctgactagaattccagagcccctcaagaacagggaacctgcaacacatcctgaccatgctaagctccagcctcccacgaaggagtttcttgagtactaggagccagttgagaaagatctcctgaactcttttgcacatctccctnaggangaacaggaggctatcatgggtaggcttgagacncttcaaagcaaactgaccaacatacagggcctagancttaacnccaattntcctcactcggaactccgcctgataacattttcgccgaccaaacttcccaatcaatctgtccttctgcccaattctcgcttgagcgctcacctaactgggaatcttgttccatctgtggaacctgaccagttgacacttccgtcgaccgntaacaccaaccgtcttgttccccggtgtgatttccccccaaatctcctctccgctgatgtcccagnccctcaggttgaccctcacccacatctaattccactctcaccagtcatagaacgncatcatcctctgcanctggctgactccttatcgagcccctcccctcctcagatggactggactaggaagcccatanattctcccactacaaggaactggtcggctatgctgtacctcagcccagatgaactaggcctgtccaaccccggcggtgttagtaaatcagcaactgtagaancacataatcctaagccccaaaaggcaaacggctgcattttccctgaccctgagggctctctggaacatacttcccaatgactaaaaatcctctcctggaatgtggcaggatggggaantaaatgcaaagatcctgacctgctaaccttcctttcgggctttaacatcatctgtttacaagagacctggnttttagaaaacgaattccctcatgtccaaggtttcgggccttttctctatccagccttncggcaaagtaattttggtagaggcaagggtgggctagccacactgatttcagttaacgtcagagggncagcttctgagctacctggcacgtataataagaacttattcctcccgatcctgatccagcttcctgataagaccgacctggtatgtcttaacgtatatatccctcctgctaatgtgcatgcagatccctcagatgtctggaaccaatttgacagtcttctgaactttatatnttctaagcatccattagctgacataataattttaggagacttgaatgccaggattggcaatggttctgccaaagcttcatccataggaaatctggactgggaagattgcttccctatgggccatttctccagggatagccgcctgaatcaaagaggaaaatacctggtcaaactcatttatnatcacaatctaatantgctaaatggcagcccgtgggataagtctagggggaatttcacttacatctctaatcaagggaccagcgttattgattatttaataatcagcccttctttgcttatctccatccttgagatggatattttagaccgggttgaaagtgatcatttcccccttaaacttattctgaccttcaatattgctgtccctgagtctgaccgtacacataactggaacggtgagattaggggantaagaaggttaagatggagcgagggtctctctaattccataagtaaccttctgaggtccaaagaatttatagcactctgctcaaactgtcttttgggagaggcttctcctctaattacatgtcaacggatcgtagacaggctgaaaccagccttgactgccccgtgtctgggcaatcgggggactggccaccctanctcttggttcgataaagactgccgggaagccagaaaaatcctggcaaagttagcgagataacatctcaaacggaactcagangaagccacgcanaaacttattaagttcaaatccttttataaattaaatcctnnattttnaaaacgggattataatagatctcagtgggaggctttgggcttagccgtcagggccaataacgaatgcagatttggggacattgttgcccatggtatggcttctgcaagaggaatcgtagaagcacaaatttccgttgatgactgggcgagttatttcnctcgactttacagtcctacgatgatctctccgtattttgtagattccaggactctccctagctgggatccagtaactccatccgctntaaaacatctgattaatcacctnaagctgaaaaaggctccaggagaagatcttttgccgccagaactgtttagatcctgttctgagtggtgggccccaatccttgccaaactatttactctaattaactcctcaggtatagttccctcaggatggactcaaagtgtagtctaccccattttcaaaaagggnaatcctctacttccccaaaattacagacccattagtttgctggatattccttcaaaactctatgccagctttcttctcaacaaactgcaggtctgggtctctcaatctaatatcttgcatgaggagcaagcaggttttaggcacaactattccactactgatcactgctatactctgtttcatcttaccgagaaaacggttaagaacaacgtaagacttttcgcagcattcattgatctntcatcagcctttgattccatagacaggaaccgtctatgggccaagctgtatgatctcgacatagatcccaggctattaatgcttcttcaaagcctgtatcataataccaccgcgagaatcagagtgggcaggaacggtctcctgacagatcaaattccaattttaaatggtataaaacagggctgtgtcctagcccccctcctttttaacttatatctaaataacttgatacagcttttagatgaactggatgcatgccctcctgccatagcaaacaggaagacaagcatcctcctctatgctgatgacatggttttattatcacgaaccaggagtggcctcaagaagcagctgaacctgttggctaattactgtcagaaagaacagctcaatatcaactatgccaaaaccaaaatcgtcgtttttggcagacattctccaacattcaaatggacaatactaaataactccatccaacaggtcaactcattcagttacctgggggtacattttgcagctaactcatcctggcgggcccatcgggatgcagtnctgctcaaaatcagacgttctacgggagccatactgaggttcttttatggtcgaggcggncgattggtaacacctgcccttaaaattttccaggccaaaatcatctcttccatgctctatggcgcagaactctggggtctcaaccgagtacttgtccaagcgcttgagcagatccaaagctgcttcttgaggaaaatcttggccctgcccgcaggtactcccgcggcccacctccgtgcagaggtgggatggccctccatccgggcgagaatacaagtcaggctcctnaattttcataacagaatgtcaactctgccacctgcacgtctggtatctaaagcatatggatctccctttaatcaacaacacagaatatctgcacttcaggcactcgccagagaattcaacctcgaattgactgctatccagctcctgccaaaagctcggctgagacaactgatatttgagagagatagtctaagggacatgctaaccatccattcctctagattctctaagctctatccctgtatcaagttagatcaccagaaagcnacatacctggaccacattancttagctccccgcagaaatgccttcactgaattacgatttaatgttatgccctcggcttttatcgagggtcgatataagaaacggccatatgaagaacgtttctgcatcttctgtaaaaccgttgttgaagacattgtccattatgttactcaatgtcccttatataaagacccacgtgataaattcctcttagaatttagtgccaggaaaaagtttgtctctcctgangaactggtatgcttccttttatcagacaatgagaactatgtaactcatcatgtttccctttttgccttggctgccaggaagctcagagctaaatttaatgctcaattgcagtaactatnttagcccttatggcttgcatatttgtttccttacttttctttggtcttgatcttctattctactttattttccttgttcctgattttttaaatttatattttttaattttattgtgtgtcttttattgtaagccgcctcaaatcctttttggaagtaggcggggtataaataaataaa
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 201 99.0 Highly correlated
2 ZNF394 58 99.0 Highly correlated
3 ZNF766 53 43.0 Weakly correlated
4 ZNF680 46 28.9 Weakly correlated
5 ZNF263 38 180.0 Weakly correlated
6 ZFP37 31 99.0 Highly correlated
7 ZNF92 31 28.9 Weakly correlated
8 ZIM3 30 87.0 Moderately correlated
9 ZNF589 28 28.9 Weakly correlated
10 ZNF317 27 99.0 Highly correlated
11 ZNF175 24 94.0 Moderately correlated
12 ZNF101 21 43.0 Weakly correlated
13 ZNF584 19 99.0 Highly correlated
14 ZFP69B 19 99.0 Highly correlated
15 ZNF2 18 99.0 Highly correlated
16 ZNF18 16 160.0 Weakly correlated
17 ZNF197 15 99.0 Highly correlated
18 ZNF679 15 28.9 Weakly correlated
19 ZNF324 15 99.0 Highly correlated
20 ZNF558 14 99.0 Highly correlated
21 ZNF723 13 15.2 Weakly correlated
22 ZNF793 13 99.0 Highly correlated
23 ZNF701 12 28.9 Weakly correlated
24 ZNF554 12 99.0 Highly correlated
25 ZNF528 12 43.0 Weakly correlated
26 ZNF479 11 6.4 Weakly correlated
27 ZKSCAN1 10 160.0 Weakly correlated
28 ZNF597 10 94.0 Moderately correlated
29 ZNF610 10 28.9 Weakly correlated
30 ZNF705B 9 28.9 Weakly correlated
31 ZNF534 8 19.6 Weakly correlated
32 ZNF490 8 43.0 Weakly correlated
33 ZNF257 7 0.0 Weakly correlated
34 ZNF251 7 94.0 Moderately correlated
35 ZKSCAN8 7 160.0 Weakly correlated
36 ZNF705D 6 28.9 Weakly correlated
37 ZNF75D 6 94.0 Moderately correlated
38 ZNF695 5 28.9 Weakly correlated
39 ZNF28 5 28.9 Weakly correlated
40 ZNF485 4 94.0 Moderately correlated
41 ZNF506 4 28.9 Weakly correlated
42 ZNF735 4 28.9 Weakly correlated
43 ZNF425 4 94.0 Moderately correlated
44 ZNF140 3 99.0 Highly correlated
45 ZNF429 3 28.9 Weakly correlated
46 ZNF547 3 74.0 Weakly correlated
47 ZNF549 3 87.0 Moderately correlated
48 ZNF182 3 99.0 Highly correlated
49 ZNF264 3 99.0 Highly correlated
50 ZNF792 3 94.0 Moderately correlated
51 ZFP57 2 87.0 Moderately correlated
52 ZNF682 2 28.9 Weakly correlated
53 ZNF133 2 99.0 Highly correlated
54 ZNF585A 2 99.0 Highly correlated
55 ZNF320 2 28.9 Weakly correlated
56 ZNF730 2 19.6 Weakly correlated
57 ZNF786 2 99.0 Highly correlated
58 ZNF440 2 28.9 Weakly correlated
59 ZNF778 2 74.0 Weakly correlated
60 ZNF468 2 28.9 Weakly correlated
61 ZNF845 1 28.9 Weakly correlated
62 ZNF84 1 99.0 Highly correlated
63 ZNF8 1 99.0 Highly correlated
64 ZNF91 1 6.0 Weakly correlated
65 ZFP28 1 99.0 Highly correlated
66 ZNF441 1 43.0 Weakly correlated
67 ZNF136 1 74.0 Weakly correlated
68 ZNF169 1 94.0 Moderately correlated
69 ZNF202 1 160.0 Weakly correlated
70 ZNF214 1 99.0 Highly correlated
71 ZNF248 1 99.0 Highly correlated
72 ZNF274 1 99.0 Highly correlated
73 ZFP69 1 99.0 Highly correlated
74 ZNF41 1 99.0 Highly correlated
75 ZNF671 1 94.0 Moderately correlated
76 ZNF44 1 43.0 Weakly correlated
77 ZNF486 1 8.6 Weakly correlated
78 ZNF519 1 19.6 Weakly correlated
79 ZNF557 1 15.2 Weakly correlated
80 ZNF563 1 28.9 Weakly correlated
81 ZNF585B 1 99.0 Highly correlated
82 ZNF613 1 99.0 Highly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF680 10 28.9 Weakly correlated
2 ZIM3 9 87.0 Moderately correlated
3 ZNF101 7 43.0 Weakly correlated
4 ZNF528 6 43.0 Weakly correlated
5 ZNF723 5 15.2 Weakly correlated
6 ZNF534 5 19.6 Weakly correlated
7 ZFP37 5 99.0 Highly correlated
8 ZNF701 5 28.9 Weakly correlated
9 ZNF589 5 28.9 Weakly correlated
10 ZNF382 4 99.0 Highly correlated
11 ZNF197 3 99.0 Highly correlated
12 ZNF735 3 28.9 Weakly correlated
13 ZNF479 3 6.4 Weakly correlated
14 ZNF793 3 99.0 Highly correlated
15 ZNF485 3 94.0 Moderately correlated
16 ZNF175 3 94.0 Moderately correlated
17 ZNF584 3 99.0 Highly correlated
18 ZNF317 2 99.0 Highly correlated
19 ZFP69B 2 99.0 Highly correlated
20 ZNF766 2 43.0 Weakly correlated
21 ZNF554 2 99.0 Highly correlated
22 ZNF257 2 0.0 Weakly correlated
23 ZNF549 2 87.0 Moderately correlated
24 ZFP69 1 99.0 Highly correlated
25 ZFP28 1 99.0 Highly correlated
26 ZNF585A 1 99.0 Highly correlated
27 ZNF440 1 28.9 Weakly correlated
28 ZKSCAN8 1 160.0 Weakly correlated
29 ZNF140 1 99.0 Highly correlated
30 ZNF558 1 99.0 Highly correlated
31 ZNF136 1 74.0 Weakly correlated
32 ZNF133 1 99.0 Highly correlated
33 ZNF75D 1 94.0 Moderately correlated
34 ZNF264 1 99.0 Highly correlated
35 ZNF490 1 43.0 Weakly correlated
36 ZNF18 1 160.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF528 43.0 Weakly correlated