ZRdb KZFP & Repeats
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LINE_L4_B_MAM

  • Name
    L4_B_MAM
  • Repbase
    No find
  • Type
    LINE
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000365
Description :

L4_B_Mam is one of three ~80% similar L4 subfamilies. ORF1 (<1-1440) isnot fully reconstructed, though ORF2 (~1441-4755) may be. These proteinsare similar to those of RTEX-1_ACar in lizards and L5 in ancientmammals. The substitution level found in the Laurasiatherianreconstruction is ~40%.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tctagatctgtatctattcatccaccctcccttaataanccccccattcccttcaatgttgaatctcctacctaaaaactttaacctgagtaacncaggagacccacaggctaaaattccctcccaggacgataataattctacctgtgcngacagcacatttgaactgctggaacggtgttgttttctcacgtcacgaactatccagtccctttatgaggagatacgtgatctaaaatccatggtctctgccntatacaatcactggacattgggcaagccgtgtaaacagactactgcgcgacaggagaaggaggtaggtgggaggttccgttcagggagggaccctcaacgtaactccccaggtttaattttaacgaacaaccaggtngtcttgaancttccaataagactccttggaaggaggcacaatagagggtccataatcaagctattggaatcccttttacatcggcctgcctccagaataaatctgatcaaactgattcaccttccttcaaggcaggatttcaaaaggatcctcttagtgtgtaggtctccccaactcccttcccttatcatgagagccaaggagaagttggctagggctgggattatctccaatagggttttnaacgaaggcaggnctgcatctttnctgggttactcctacaaacaaaaaacagaaccctnattaggcagcccgggcctgtttagaactccagagccccacaagaatggggcacctgcctcacttcctgaccacaggcctcagtcccccacaaagaagtcctctgagtncagggagccggctgaggacgggctcctgnactcctttgctcatntccctaagagagaacaggatgccattttgggcaggcttgagtccctggaaaacaanctgatcaatcttcagggcctaggccgtggcgatgattcccccaatttantgnnattttcgctnactaagcctcctacncaccccatctnnagggcccgttcgagtgagaacctcctcccctcggtggaatctgcccaactgncgtctccatcagcngactatattccccacttagtctcacagtgtgattcctctccaaatctcctccctgctgagggctcagaccctcaggctgtccctcaccaacgttcaattccactctccccagccacagtctgcggtaactctcctcagctggctgactctccagtgagccccgcccctncgcaggcgacctggtccagaaagcccgcagactctcctaccacgaagaactggctagacatgctatatcttggcccggacgaacnaggcctgccagattcgggtcgggccattcaaccggcagctacagtctcatttaaccctaagctgcataaggccaatggctgcattcttccagacctagtagattccctggagtgtgcctcccaatgactaagattcctctcctggaatgtggccggatggggtcctaaacgtaaagatcccgatntgttagcttttctcatgggttttaatattatatgtctgcaagagacctggattttagaaaacgnatttcctcatnttcaaggtttcggatcttttctttttccggctgtaagggaaaaaaattttggcagaggtaagggtgggctggccgctctgatctcagtcaacgtcaggaggaccgtcactgagctcccgggctcatataataagaacttgttccttcccgtcttgattcggctccctaataagatggacgtgatntgccttaacgtttatatccctcctgccaaggcacacgctgtctgtttagatgtctggctncaatttgataatcttttgaactctatntattctatgtatccgacggcngagataattatctctggagacctgaacgccaggattggcggtagngctgccagggccttacctggagacaatctggactgggaggattgctttcccatgggccactctcctagggatagctgtgtnaatctaaatggaaaattcctngccaaatttatttataaacanaatctgatattgctgaatggcagcctatgggacaaatctgggggaaatttcacttatatctctantctaggggccagtgttatagactatattatagttagcccctctctgcttaccgccatcctcgggatggatatcttggaccgcgtngaaagcggccatttccccctcactttaacccttgacatagctgtccctgagcccgtttgtacccataattggactggtgagattagggggttnagaagantgagatggagtgaggggctttcnaattctatcggtgantttttgctgtccgaggatcttctgaaactccgttttgattgcctcgagagagaggcttctcctctcatctcttatcaacggattattgacaaactgaaaccggtcttgtccgtcccacgtttgggcaaacgtgggcctcgcccttccagttcctggtttgacaaggactnccaggaagcnaagaaaaccttggctaggttagcgaggcggcatgcgaaacggaacacggaagaggctacccgggaacttatnaaatttaaatcttattataaacttcttattgcctccaaaaanctcaagtataataaatccttgtgggaggccctgggtttggctgttagaaccaataatgaaggcagatttggggacatagttacccatggcatggctctggcgagagaggtcgtggaagcacagatcctaactgacgtccgggaggcttatttttcccagctttatagtccnaggacaactgcctcaaattttgtagatcctaggcccctctctgactgggacccggtaatacctcctcatatagttcatttgattaaaaagctcaaattaaataaagcaccgggtgaagactttttgccaccagaactgttcaaagcctgttctgactggtgggctctgatcctcgccaacctgtttaccttaattaactccncgggtacgatcccatctggatggactcaaagtatagtctaccccattttcaaaaagggcaatcctctacttccccnaaactacagacctattagtttgctggacattccatctaaactttatgccagtttcctccttaacaaactgcaggtctgggtttctcaggccaatattttacatgaggagcaagcgggcttcaggcacggctattccactattgaccactgttatactctttatcaccttgtggagaaatctgtcaagaacaacgtaagattgtttgcagcttttattgacctttcctcggcctttgactctgtggacaggaaccggttatgggctaagctgcatgagctcaatatagactcccggttactgatgctcatacagaacctgcactttaataccaccgcgagagtcagggtcggcaggaacggtctcctgacagatcagataacaatttcgagtggtataaaacaggactgtgttctggctccccttctttttaacttgtatcttaatgatttgaaaccgcttttggatganctggatgcatgccctcctgccatagagaatagaaagataagtatcctcctntatgctgatgacatggttttattgtcacgaactaggagtggcctcaanagacaattggtcctgctatctaattactgtcagaaagaatggcttaanatcaactattctaaaactaaaatcattatttttggcagacgttctccaaaatttaattggtttatatcnaataactccatacagcaggtcaattcgttcagttacctaggggtacattttgcaactaattcatcctggcgggttcaccgggaagctacgttgctcaaaatcagacgttccacgggagcattactgagatttttctatggccgcggtgggcgactggtaacacctgctttgaaaattttccaggccaaaatcatctcggccatgctctatggcgtagaactttggggnctcgatcgancatttgttcangtgctggagcagacccagaactgcttcctgaggaaaatcctggctttgcctgcaggtactcccgcggcccacctccgtgcggaggtgggatggccttccatccaggcgagaatcctggttaggctcctcaattttcataanagaatgtcaaccctaccacctgctcgtctggtttctaaagcatatggatctgccctcaatcagcaacacagaatacctgcactccaggcccttgccagagaatataacctcgaactgtctgctatccagctcttatcaaaagcccggctgagagaaatgatatttanggaagattgtctgaaggacatgcagtccatccattcctctagatactctaaattctatccttggatcaagccggaccaccagaaagctgcatacttggaccacattancttagctccctgcagaatcgccttcactgagttgcgctttaatgttatgccctcggcttttatcgagggncgctataagaaacagccatatgaaatccgctnctgcatttgctgtaaaaatgttgttgaggacattgtccattatatcactcagtgtcccctatatgaagncccacgtgagaaatttcttttagaatttagtgccaggaaaagctttgtttcccctgaggaactggtatgcttcctcctttcggacaatgagaactatgtaactgatcatgtttccctttttgctttggctgccaggaagctcagagccaaatttgaagctcaatcgtagcaactatgtnggcccttatggcctgcatatttgcgtccttacttttctttggtcttgatcttctattctactttattttccttgntcctgattttttaaatttatattttttaattttattgtatgttttntgttgtaagccgcctcaaatcctttgtggaacgaggcaggatataaataaataaa
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 88 99.0 Highly correlated
2 ZNF394 44 99.0 Highly correlated
3 ZNF766 41 43.0 Weakly correlated
4 ZNF263 27 180.0 Weakly correlated
5 ZFP37 25 99.0 Highly correlated
6 ZNF589 21 28.9 Weakly correlated
7 ZNF680 20 28.9 Weakly correlated
8 ZIM3 20 87.0 Moderately correlated
9 ZNF2 16 99.0 Highly correlated
10 ZNF679 15 28.9 Weakly correlated
11 ZNF92 14 28.9 Weakly correlated
12 ZNF18 14 160.0 Weakly correlated
13 ZNF175 14 94.0 Moderately correlated
14 ZNF479 12 6.4 Weakly correlated
15 ZKSCAN8 12 160.0 Weakly correlated
16 ZNF317 12 99.0 Highly correlated
17 ZNF197 10 99.0 Highly correlated
18 ZNF610 9 28.9 Weakly correlated
19 ZKSCAN1 8 160.0 Weakly correlated
20 ZNF584 8 99.0 Highly correlated
21 ZFP69B 7 99.0 Highly correlated
22 ZNF701 7 28.9 Weakly correlated
23 ZNF723 7 15.2 Weakly correlated
24 ZNF101 7 43.0 Weakly correlated
25 ZNF251 6 94.0 Moderately correlated
26 ZNF554 6 99.0 Highly correlated
27 ZNF705B 6 28.9 Weakly correlated
28 ZNF324 6 99.0 Highly correlated
29 ZNF534 6 19.6 Weakly correlated
30 ZNF597 5 94.0 Moderately correlated
31 ZNF585B 5 99.0 Highly correlated
32 ZNF793 5 99.0 Highly correlated
33 ZNF549 4 87.0 Moderately correlated
34 ZNF558 4 99.0 Highly correlated
35 ZNF778 4 74.0 Weakly correlated
36 ZNF705D 4 28.9 Weakly correlated
37 ZNF133 4 99.0 Highly correlated
38 ZNF347 4 43.0 Weakly correlated
39 ZNF585A 4 99.0 Highly correlated
40 ZNF528 4 43.0 Weakly correlated
41 ZNF441 3 43.0 Weakly correlated
42 ZNF224 2 69.0 Weakly correlated
43 ZNF707 2 74.0 Weakly correlated
44 ZNF282 2 319.0 Weakly correlated
45 ZNF182 2 99.0 Highly correlated
46 ZNF671 2 94.0 Moderately correlated
47 ZNF506 2 28.9 Weakly correlated
48 ZNF274 2 99.0 Highly correlated
49 ZNF28 2 28.9 Weakly correlated
50 ZNF429 2 28.9 Weakly correlated
51 ZNF792 2 94.0 Moderately correlated
52 ZNF264 2 99.0 Highly correlated
53 RBAK 1 99.0 Highly correlated
54 ZNF684 1 99.0 Highly correlated
55 ZNF695 1 28.9 Weakly correlated
56 ZNF808 1 19.6 Weakly correlated
57 ZNF84 1 99.0 Highly correlated
58 ZNF816 1 28.9 Weakly correlated
59 ZNF823 1 43.0 Weakly correlated
60 ZNF780A 1 43.0 Weakly correlated
61 ZFP57 1 87.0 Moderately correlated
62 ZNF75D 1 94.0 Moderately correlated
63 ZNF75A 1 94.0 Moderately correlated
64 ZNF81 1 99.0 Highly correlated
65 ZNF749 1 28.9 Weakly correlated
66 ZNF727 1 19.6 Weakly correlated
67 ZNF445 1 99.0 Highly correlated
68 ZNF17 1 69.0 Weakly correlated
69 ZNF140 1 99.0 Highly correlated
70 ZNF214 1 99.0 Highly correlated
71 ZNF257 1 0.0 Weakly correlated
72 ZNF26 1 99.0 Highly correlated
73 ZNF283 1 99.0 Highly correlated
74 ZNF320 1 28.9 Weakly correlated
75 ZNF334 1 99.0 Highly correlated
76 ZKSCAN5 1 160.0 Weakly correlated
77 ZNF436 1 180.0 Weakly correlated
78 ZNF440 1 28.9 Weakly correlated
79 ZFP69 1 99.0 Highly correlated
80 ZNF44 1 43.0 Weakly correlated
81 ZNF485 1 94.0 Moderately correlated
82 ZNF486 1 8.6 Weakly correlated
83 ZNF519 1 19.6 Weakly correlated
84 ZNF547 1 74.0 Weakly correlated
85 ZNF563 1 28.9 Weakly correlated
86 ZNF616 1 43.0 Weakly correlated
87 ZNF641 1 99.0 Highly correlated
88 ZNF674 1 99.0 Highly correlated
89 ZNF677 1 99.0 Highly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZIM3 8 87.0 Moderately correlated
2 ZNF479 7 6.4 Weakly correlated
3 ZNF680 5 28.9 Weakly correlated
4 ZNF263 3 180.0 Weakly correlated
5 ZNF766 3 43.0 Weakly correlated
6 ZNF528 3 43.0 Weakly correlated
7 ZNF534 3 19.6 Weakly correlated
8 ZNF723 3 15.2 Weakly correlated
9 ZNF317 2 99.0 Highly correlated
10 ZNF549 2 87.0 Moderately correlated
11 ZNF589 2 28.9 Weakly correlated
12 ZNF707 1 74.0 Weakly correlated
13 ZNF684 1 99.0 Highly correlated
14 ZNF679 1 28.9 Weakly correlated
15 ZNF597 1 94.0 Moderately correlated
16 ZFP69 1 99.0 Highly correlated
17 ZNF735 1 28.9 Weakly correlated
18 ZNF808 1 19.6 Weakly correlated
19 ZNF671 1 94.0 Moderately correlated
20 ZNF701 1 28.9 Weakly correlated
21 ZNF257 1 0.0 Weakly correlated
22 ZKSCAN8 1 160.0 Weakly correlated
23 ZNF382 1 99.0 Highly correlated
24 ZNF677 1 99.0 Highly correlated
25 ZNF81 1 99.0 Highly correlated
26 ZNF197 1 99.0 Highly correlated
27 ZNF133 1 99.0 Highly correlated
28 ZNF101 1 43.0 Weakly correlated
29 ZKSCAN5 1 160.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats