ZRdb KZFP & Repeats
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LINE_L4_A_MAM

  • Name
    L4_A_MAM
  • Repbase
    No find
  • Type
    LINE
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000364
Description :

L4_A_Mam is one of three ~80% similar L4 subfamilies. ORF1 (3-1490) isnot fully reconstructed, though ORF2 (~1491-4805) may be. Theseproteins similar to those of RTEX-1_ACar in lizards and L5 in ancientmammals. The substitution level found in the Laurasiatherianreconstruction is ~37%.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
agtggtaaaaatgcagacatcctcaccccagacgggagnantnnaggagcccctctcccncagctgcccctgcagctgcctccctggctccctcnaacggatctcctagcccanttaaggatggctctccaaaaancctcaccccgggagactcgggaggcccacgggttnattctccccagggctataattctcnccgtgcagatggcacntttgatttnctggaacggtgttncttcctgacatctcacaccatccagnccttatatgaggagctgcgcgttttaaaatccgtggtctccaanatacataaccattggatttggggcaaaccgtgccaanagcatgccacgagncaggaggggatggtggacgggaggtcacacccggggaagggccctccatgcanngcccctggcctgaccctggtgaggaaccaggtggcgntgaacctcccgatggacnctcatgggaggaggcacggtagaggntccgtagccaggctcctggnaccgcttttacaccagcctgcttctaatncacttatttccaggtcgncccacctcccttcccggcagggtcataggaggancctcttggcgtgcggctctccccagctcccttccctcattatganggtcaaggagaanctggctagagcgnggnttatcccgaatagggtttttaaaacggggtcagctgcgcccctgctgggcggttctcttaatttgtcaggacctntactgggcaacccaggtccgcctagaanaccagaacctaaggagaaggggaggcccgtttcacctccagaccatgggccttggtcccccctgggaaagttctcggggcacagggaggtggctgaggctgggttctctcgatcctttgtccgtctccctaagggagaacaggacgctattctggggaggttagagtccctgaaggatnanttaatcaaccttcagggcctaggccataatganaatacccctgacttcatgnagttttctcccatcgganctcctgttgggtccccttgnaggacnccancgaaggggagctctctccccngagngggccccgccccattactgcacaatctgactgattgcacctcccacccagcctcaggaagtgacatctcccctagccctttcctgactgagagactggaccctcaggccgcccccactcattgcccgactccnctctcccnagtgatagtcctngagaatcctccttgtttggctgactcaccagtaagccccaccccagtgcaggtgacctggcccagaaagcctgcagactcccctatttccaggaactggttagacatgctccaccttggnccggatgagcttggcttgccagatccggggcgagccgctccgccggaagcagcggcctcggcgggtgctaagccacacggtaaggccaacggctgcattcttttagatccggtagactccctggagcgtgcccctcaatgactaagattcctctcctggaacgtggccgnttggggccctaaaggtaaggaccccgatgtgtcggcttttctgatgggttttaatattatatgcctgtaagagacctggattttagaacattcatctccccatattcanggttttagaccttttatctctccggctgtcggggaaaaaaattttggcagaggtaagggtgnattggccacccttatctccgtcaacctcagggggactgctgtcgagctncctggctcatatgacaggaatcttttccttctggttctgattcggttccctggcaagctggatgtgatttgtcttaacacttacattccccctgccaaggcgcacgctgtctgcttggacatatggtctcattttnatgatcttttaacttttatttattctacgtaccccatggcggagttaatcatctctggggacctgaacgccaggattggcggcgggtccgatggggccctacctggagccgctgaggaatgggaggattgcttccccgtgggccattcttttagagacagatgtattaacctaaatggaaaatttctcaccaaacttatttatgaacagaacctggtggtgctgaatggtagcacgtgggataaatctgggggaaattttacccgtatctctactctgggggccagcatcatagattatatcatagttagcccctctctgcttactaccatccttagaatggatattctggaccgggtagaaagtgatcatttccctctcgttttaacccttggcgtagctgccccggagcccgtctgcactcatgattggactggngagattagggggctgagaagagtaagatggaccgaggggctttcaaactctattggtgacctnttgctatccgaggacttcttaaaactctgcctcaggtgcctcgagggagaggtttctcctctcatctcttatcaacggattgctgataacttaaaaccggttttatccgcactgtgtcccggcaaacgtgggacttaccctcctagtgcctggtttgacaaggactgtcaggnagccaaaaaaatcttggccaggttagtgaggcgacatgcgaaacgaaaatcggaagaggccacccgggatcttatcaaatttaaatcttattataaacttctcattgcctcgaaaaaactcaggtataataaatccntgtgggaggacctgagtttggccgttagatccggtaatgagggcagattctgggacatagttacccgaggtatgaatttggtgagtgaggtcgtggaagctcagatcccggttgacacctgggaggcttacttttcccagctttacaaaccaaggtcaactgccccgaactttgtagatcccaggccgctttctgactgggtcccggtaatactccctcatatngtacagttgattaaaaagctcaagctaaataaagcacccggggaagatttcctgcctccagaactgttcaaggaccgctctgaatggtgggctccgatccttgccaatttgtttacctttatcaactctacgggtatggtcccgtctggttggacccagagtgtagtctatcccattttttaaaagggcaatcctttacttcccccaaattatagacctattagcttactagacattccatctaaaatgtatgccagtttccttcttgataaattgcaagtctgggtttctcaggccaatattctacacgaggagcaggcgggctttaggcacggctattccactattgaccactgttatactctttatcaccttgtggagaaatctgtcaggaacaacataagattgtttgcggcttttattgacctttcctcggcctttgactctgtggacaggaatcggttatgggctaagctgcatgagctcaatatagacccccggctattgatgctcatacagaacctgcaccttaataccaccgcgagagtcagggtcagtaggaacggtctcttgacggatcagataacaatttccagtggggtaaaacagggatgtgttctgcctaccctcctttttaacttgtatcttaatgacttgataccacttttggatgagctggatgcatgccctcctgccatagagaacagaaagataagcattctcctatatgcagatgacatggttttattgtcacgaactaggagtggccttaatagacaactggccctgctatctaattactgccagaaagaanggcttnagatcaactattctaaaaccaaagtcatcatttttggtagacgtcctccaacatttaactggcttatagctaataaccctatacagcaagtcaactcattcagttacctaggngtacattttgcaactagtttatcttggagggttcaccaggaagttacattgctcaaagttagacgttctatgggtgctttactgagatttttttatggccgaggtgggcgtttggtnacacctgctttaaaaattttccaggctaaaattattgcggccatgctctatggcgtagaactttggggcctcgatcgcccatttgtccgtgtgttggagcagacccagaactgttttctgaggaaaatcttggccctgcccgcgggtactccctcggcccacctccgtgcggaggtggggtggccttctattcaggcacgcgtcctngttaggctcctcaattttcataagaggatgtcaaccctacccccagctcggctgactgttaaagcatatggntctgcncttaaccggcaacatagaatagctgcactccaggtncttgtcagagagtataacctcgaactcnctgccgcccaatacttatcaaaagctcggttgagagaaataatatttatggaggattgcctgaaggatatgcagtccatccattcctctagatactctaaantctatccttggattaagccagaccancagagagctgcgtacctggaccgcattgttttggctccctgcagaattgcttttactgaattgcgctttggcgttatgccatcggcctacattgagggacgttataagaaacagccctatgaaactcgttactgtatttactgtaaggatgttgttgaggacgttgttcattacatcacacagtgtcctctttatgaggacccacgggagaaatttctctcnggtctcagtaccaggaanagctgtgcttctcctgagcaactggtttgtttttatcttatggacactgtgaatcgtgtaactgatcatgtttccctctttgcnttggctgctaggaagctcagagccaaatttgtggcccacctctagcaantgtacaggaccttatggcatgcattttgtgtactaacctcactcctggcttcatcttatttttctacccttattttcctttttcctgattttttaaatttatattttttaattttattgtatgtatttttgtaagccgccttaaatcctttttggaacaaggcaggatataaataaataaa
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 218 99.0 Highly correlated
2 ZNF766 88 43.0 Weakly correlated
3 ZNF394 86 99.0 Highly correlated
4 ZNF263 65 180.0 Weakly correlated
5 ZFP37 61 99.0 Highly correlated
6 ZNF680 50 28.9 Weakly correlated
7 ZNF589 42 28.9 Weakly correlated
8 ZNF2 41 99.0 Highly correlated
9 ZNF175 38 94.0 Moderately correlated
10 ZNF18 37 160.0 Weakly correlated
11 ZNF479 33 6.4 Weakly correlated
12 ZNF679 33 28.9 Weakly correlated
13 ZKSCAN1 32 160.0 Weakly correlated
14 ZFP69B 31 99.0 Highly correlated
15 ZNF101 31 43.0 Weakly correlated
16 ZIM3 30 87.0 Moderately correlated
17 ZNF723 30 15.2 Weakly correlated
18 ZNF92 30 28.9 Weakly correlated
19 ZNF197 29 99.0 Highly correlated
20 ZNF317 28 99.0 Highly correlated
21 ZNF584 28 99.0 Highly correlated
22 ZNF324 27 99.0 Highly correlated
23 ZNF558 27 99.0 Highly correlated
24 ZKSCAN8 25 160.0 Weakly correlated
25 ZNF554 22 99.0 Highly correlated
26 ZNF534 21 19.6 Weakly correlated
27 ZNF701 19 28.9 Weakly correlated
28 ZNF705B 19 28.9 Weakly correlated
29 ZNF705D 18 28.9 Weakly correlated
30 ZNF75D 15 94.0 Moderately correlated
31 ZNF793 15 99.0 Highly correlated
32 ZNF597 14 94.0 Moderately correlated
33 ZNF610 13 28.9 Weakly correlated
34 ZNF140 12 99.0 Highly correlated
35 ZNF133 11 99.0 Highly correlated
36 ZNF274 11 99.0 Highly correlated
37 ZNF528 10 43.0 Weakly correlated
38 ZNF257 7 0.0 Weakly correlated
39 ZNF440 7 28.9 Weakly correlated
40 ZNF506 7 28.9 Weakly correlated
41 ZNF214 6 99.0 Highly correlated
42 ZNF264 6 99.0 Highly correlated
43 ZNF320 6 28.9 Weakly correlated
44 ZNF429 6 28.9 Weakly correlated
45 ZNF682 6 28.9 Weakly correlated
46 ZNF778 6 74.0 Weakly correlated
47 ZFP57 5 87.0 Moderately correlated
48 ZNF182 5 99.0 Highly correlated
49 ZNF251 5 94.0 Moderately correlated
50 ZNF28 5 28.9 Weakly correlated
51 ZNF425 5 94.0 Moderately correlated
52 ZNF486 5 8.6 Weakly correlated
53 ZNF547 5 74.0 Weakly correlated
54 ZNF549 5 87.0 Moderately correlated
55 ZNF707 5 74.0 Weakly correlated
56 ZNF471 4 94.0 Moderately correlated
57 ZNF485 4 94.0 Moderately correlated
58 ZNF490 4 43.0 Weakly correlated
59 ZNF573 4 94.0 Moderately correlated
60 ZNF84 4 99.0 Highly correlated
61 ZKSCAN5 3 160.0 Weakly correlated
62 ZNF273 3 28.9 Weakly correlated
63 ZNF334 3 99.0 Highly correlated
64 ZNF519 3 19.6 Weakly correlated
65 ZNF674 3 99.0 Highly correlated
66 ZNF677 3 99.0 Highly correlated
67 ZNF735 3 28.9 Weakly correlated
68 ZNF792 3 94.0 Moderately correlated
69 ZNF878 3 43.0 Weakly correlated
70 ZFP28 2 99.0 Highly correlated
71 ZIK1 2 87.0 Moderately correlated
72 ZNF10 2 99.0 Highly correlated
73 ZNF202 2 160.0 Weakly correlated
74 ZNF248 2 99.0 Highly correlated
75 ZNF284 2 43.0 Weakly correlated
76 ZNF333 2 99.0 Highly correlated
77 ZNF350 2 99.0 Highly correlated
78 ZNF418 2 43.0 Weakly correlated
79 ZNF441 2 43.0 Weakly correlated
80 ZNF44 2 43.0 Weakly correlated
81 ZNF563 2 28.9 Weakly correlated
82 ZNF585B 2 99.0 Highly correlated
83 ZNF667 2 99.0 Highly correlated
84 ZNF695 2 28.9 Weakly correlated
85 ZNF114 1 28.9 Weakly correlated
86 ZNF135 1 94.0 Moderately correlated
87 ZNF136 1 74.0 Weakly correlated
88 ZNF141 1 43.0 Weakly correlated
89 ZNF17 1 69.0 Weakly correlated
90 ZNF26 1 99.0 Highly correlated
91 ZNF283 1 99.0 Highly correlated
92 ZNF304 1 99.0 Highly correlated
93 ZNF30 1 94.0 Moderately correlated
94 ZNF337 1 43.0 Weakly correlated
95 ZNF445 1 99.0 Highly correlated
96 ZNF510 1 99.0 Highly correlated
97 ZNF525 1 19.6 Weakly correlated
98 ZNF557 1 15.2 Weakly correlated
99 ZNF585A 1 99.0 Highly correlated
100 ZNF586 1 43.0 Weakly correlated
101 ZNF607 1 43.0 Weakly correlated
102 ZNF681 1 28.9 Weakly correlated
103 ZNF730 1 19.6 Weakly correlated
104 ZNF780A 1 43.0 Weakly correlated
105 ZNF808 1 19.6 Weakly correlated
106 ZNF816 1 28.9 Weakly correlated
107 ZNF845 1 28.9 Weakly correlated
108 ZNF879 1 99.0 Highly correlated
109 ZNF8 1 99.0 Highly correlated
110 ZNF93 1 8.6 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF479 17 6.4 Weakly correlated
2 ZNF723 15 15.2 Weakly correlated
3 ZNF263 13 180.0 Weakly correlated
4 ZNF680 11 28.9 Weakly correlated
5 ZNF101 11 43.0 Weakly correlated
6 ZIM3 10 87.0 Moderately correlated
7 ZNF766 8 43.0 Weakly correlated
8 ZNF701 8 28.9 Weakly correlated
9 ZNF589 8 28.9 Weakly correlated
10 ZNF554 7 99.0 Highly correlated
11 ZNF534 7 19.6 Weakly correlated
12 ZNF793 6 99.0 Highly correlated
13 ZNF382 6 99.0 Highly correlated
14 ZFP37 5 99.0 Highly correlated
15 ZNF528 5 43.0 Weakly correlated
16 ZNF197 5 99.0 Highly correlated
17 ZNF75D 4 94.0 Moderately correlated
18 ZNF175 4 94.0 Moderately correlated
19 ZNF584 4 99.0 Highly correlated
20 ZNF558 3 99.0 Highly correlated
21 ZNF264 3 99.0 Highly correlated
22 ZNF679 3 28.9 Weakly correlated
23 ZNF140 3 99.0 Highly correlated
24 ZNF257 3 0.0 Weakly correlated
25 ZNF573 2 94.0 Moderately correlated
26 ZNF18 2 160.0 Weakly correlated
27 ZNF440 2 28.9 Weakly correlated
28 ZNF2 2 99.0 Highly correlated
29 ZFP69B 2 99.0 Highly correlated
30 ZNF506 2 28.9 Weakly correlated
31 ZNF705D 2 28.9 Weakly correlated
32 ZNF677 2 99.0 Highly correlated
33 ZNF597 2 94.0 Moderately correlated
34 ZNF485 2 94.0 Moderately correlated
35 ZNF317 1 99.0 Highly correlated
36 ZNF735 1 28.9 Weakly correlated
37 ZNF429 1 28.9 Weakly correlated
38 ZNF84 1 99.0 Highly correlated
39 ZNF610 1 28.9 Weakly correlated
40 ZNF525 1 19.6 Weakly correlated
41 ZFP57 1 87.0 Moderately correlated
42 ZIK1 1 87.0 Moderately correlated
43 ZKSCAN1 1 160.0 Weakly correlated
44 ZKSCAN5 1 160.0 Weakly correlated
45 ZNF133 1 99.0 Highly correlated
46 ZNF549 1 87.0 Moderately correlated
47 ZNF92 1 28.9 Weakly correlated
48 ZKSCAN8 1 160.0 Weakly correlated
49 ZNF283 1 99.0 Highly correlated
50 ZNF30 1 94.0 Moderately correlated
51 ZNF114 1 28.9 Weakly correlated
52 ZNF607 1 43.0 Weakly correlated
53 ZNF28 1 28.9 Weakly correlated
54 ZNF320 1 28.9 Weakly correlated
55 ZNF425 1 94.0 Moderately correlated
56 ZNF490 1 43.0 Weakly correlated
57 ZNF585B 1 99.0 Highly correlated
58 ZNF705B 1 28.9 Weakly correlated
59 ZNF10 1 99.0 Highly correlated
60 ZNF667 1 99.0 Highly correlated
61 ZNF681 1 28.9 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZIM3 87.0 Moderately correlated
2 ZNF101 43.0 Weakly correlated
3 ZNF263 180.0 Weakly correlated
4 ZNF534 19.6 Weakly correlated
5 ZNF554 99.0 Highly correlated
6 ZNF589 28.9 Weakly correlated
7 ZNF701 28.9 Weakly correlated
8 ZNF723 15.2 Weakly correlated
9 ZNF793 99.0 Highly correlated