ZRdb KZFP & Repeats
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LINE_L3B_3END

  • Name
    L3B_3END
  • Repbase
    L3b_3end
  • Type
    LINE
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000363
Description :

This represents an alternative 3' end for L3 elements.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
atttcctcntaagataaagccgctanactagcagatcaggggaatnccatagacatagtgtatcttgatttcagcaaggcatttgacaaagtctctcgtgatatcctcgtggacaagacggagaaatgtgggctgganaatggtcagttagacattcntagctggttgaacaaccgnacccaaaggacgttgatnaatggntcgatgtcaacctggagggagtctctagtggcgtgccgcagggctctgtccttggccttgtcctgtctgaatttgtatcaatgacttggatgaagatacggaaagcagcttatcaaatttgcnagtggcagaagctgggagcgacggctaatacgttggatgcaaaatcaggatccaaaacgatctcgacagactagaacgncgggccgaanccaacaagatgaaattcaacagggataaacgtaaagtcctgcacttgggttcaaaaaancaatcgcgcgagtacaggatgggggagacgcggcttagcagcagcncatgtgaaaaagacctgggggttttagttgaccgcaagctcaatatgagtcagcagtgcgacgcggctgccaaaaaagctaatgcgatcttgggctgcattaacagaagnatcgccgacagancaagggaggtgatnntcccgctctactctgcgctggtcaggccncanctggagtactgcgttcagttctgggcnccacantttaaaagggacgtggagaanttggagagagttcagaggagagcaacaaaaatgattaaagggctggaaaatgggacctatgaggaaaggttaaaggaactgggattattcagcctggagaagagaaggctgaggggngacttaataacngtcttcaagtatatgaagggttattacgtagaggacggtgaccagctgttctccatctccactgaggacagaacaagaggaaatgggcttaaactgcagcatgagggatttaggttagatataaggaagaacttcctgacagtgagagttgttaaacactggaatgggttaccgagggaggttgcggaatctccttctctggagagnctttaaaaatagaacggattctcatctgtctgggatgacttaaaggcagtcctgcctagagctaggggnagggatggactagatgacctctgaggtcctttccaattctgagattctatggttttaaa
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 469 99.0 Highly correlated
2 ZNF766 181 43.0 Weakly correlated
3 ZNF394 170 99.0 Highly correlated
4 ZNF263 160 180.0 Weakly correlated
5 ZNF92 155 28.9 Weakly correlated
6 ZFP37 150 99.0 Highly correlated
7 ZNF2 115 99.0 Highly correlated
8 ZNF589 99 28.9 Weakly correlated
9 ZKSCAN1 87 160.0 Weakly correlated
10 ZNF175 86 94.0 Moderately correlated
11 ZNF680 81 28.9 Weakly correlated
12 ZNF18 74 160.0 Weakly correlated
13 ZNF317 72 99.0 Highly correlated
14 ZNF324 72 99.0 Highly correlated
15 ZFP69B 69 99.0 Highly correlated
16 ZKSCAN8 67 160.0 Weakly correlated
17 ZNF584 64 99.0 Highly correlated
18 ZNF101 62 43.0 Weakly correlated
19 ZNF554 56 99.0 Highly correlated
20 ZNF197 54 99.0 Highly correlated
21 ZNF558 49 99.0 Highly correlated
22 ZIM3 47 87.0 Moderately correlated
23 ZNF479 47 6.4 Weakly correlated
24 ZNF610 36 28.9 Weakly correlated
25 ZNF679 30 28.9 Weakly correlated
26 ZNF274 28 99.0 Highly correlated
27 ZNF701 28 28.9 Weakly correlated
28 ZNF534 24 19.6 Weakly correlated
29 ZNF705B 23 28.9 Weakly correlated
30 ZNF528 22 43.0 Weakly correlated
31 ZNF723 22 15.2 Weakly correlated
32 ZNF597 21 94.0 Moderately correlated
33 ZNF792 16 94.0 Moderately correlated
34 ZNF705D 15 28.9 Weakly correlated
35 ZNF251 13 94.0 Moderately correlated
36 ZNF320 12 28.9 Weakly correlated
37 ZNF75D 10 94.0 Moderately correlated
38 ZNF133 9 99.0 Highly correlated
39 ZNF257 9 0.0 Weakly correlated
40 ZNF485 9 94.0 Moderately correlated
41 ZNF490 9 43.0 Weakly correlated
42 ZNF264 8 99.0 Highly correlated
43 ZNF695 8 28.9 Weakly correlated
44 ZNF793 8 99.0 Highly correlated
45 ZNF486 7 8.6 Weakly correlated
46 ZNF585B 7 99.0 Highly correlated
47 ZNF93 7 8.6 Weakly correlated
48 ZFP57 6 87.0 Moderately correlated
49 ZNF282 6 319.0 Weakly correlated
50 ZNF519 6 19.6 Weakly correlated
51 ZNF549 6 87.0 Moderately correlated
52 ZNF563 6 28.9 Weakly correlated
53 ZFP28 5 99.0 Highly correlated
54 ZNF182 5 99.0 Highly correlated
55 ZNF331 5 94.0 Moderately correlated
56 ZNF429 5 28.9 Weakly correlated
57 ZNF506 5 28.9 Weakly correlated
58 ZNF778 5 74.0 Weakly correlated
59 ZNF8 5 99.0 Highly correlated
60 ZFP30 4 99.0 Highly correlated
61 ZNF273 4 28.9 Weakly correlated
62 ZNF30 4 94.0 Moderately correlated
63 ZNF425 4 94.0 Moderately correlated
64 ZNF573 4 94.0 Moderately correlated
65 ZNF707 4 74.0 Weakly correlated
66 ZNF735 4 28.9 Weakly correlated
67 ZNF823 4 43.0 Weakly correlated
68 ZKSCAN5 3 160.0 Weakly correlated
69 ZNF286A 3 160.0 Weakly correlated
70 ZNF334 3 99.0 Highly correlated
71 ZNF436 3 180.0 Weakly correlated
72 ZNF585A 3 99.0 Highly correlated
73 ZNF736 3 43.0 Weakly correlated
74 ZNF816 3 28.9 Weakly correlated
75 ZNF140 2 99.0 Highly correlated
76 ZNF189 2 99.0 Highly correlated
77 ZNF284 2 43.0 Weakly correlated
78 ZNF28 2 28.9 Weakly correlated
79 ZNF337 2 43.0 Weakly correlated
80 ZNF343 2 74.0 Weakly correlated
81 ZNF350 2 99.0 Highly correlated
82 ZNF417 2 28.9 Weakly correlated
83 ZNF440 2 28.9 Weakly correlated
84 ZNF468 2 28.9 Weakly correlated
85 ZNF471 2 94.0 Moderately correlated
86 ZNF641 2 99.0 Highly correlated
87 ZNF667 2 99.0 Highly correlated
88 ZNF671 2 94.0 Moderately correlated
89 ZNF677 2 99.0 Highly correlated
90 ZNF75A 2 94.0 Moderately correlated
91 ZNF765 2 8.6 Weakly correlated
92 ZNF780A 2 43.0 Weakly correlated
93 ZNF81 2 99.0 Highly correlated
94 ZNF84 2 99.0 Highly correlated
95 ZFP69 1 99.0 Highly correlated
96 ZNF135 1 94.0 Moderately correlated
97 ZNF141 1 43.0 Weakly correlated
98 ZNF169 1 94.0 Moderately correlated
99 ZNF180 1 99.0 Highly correlated
100 ZNF184 1 99.0 Highly correlated
101 ZNF19 1 99.0 Highly correlated
102 ZNF202 1 160.0 Weakly correlated
103 ZNF222 1 43.0 Weakly correlated
104 ZNF230 1 28.9 Weakly correlated
105 ZNF248 1 99.0 Highly correlated
106 ZNF26 1 99.0 Highly correlated
107 ZNF33A 1 99.0 Highly correlated
108 ZNF347 1 43.0 Weakly correlated
109 ZNF383 1 99.0 Highly correlated
110 ZNF41 1 99.0 Highly correlated
111 ZNF433 1 43.0 Weakly correlated
112 ZNF510 1 99.0 Highly correlated
113 ZNF547 1 74.0 Weakly correlated
114 ZNF567 1 99.0 Highly correlated
115 ZNF586 1 43.0 Weakly correlated
116 ZNF595 1 43.0 Weakly correlated
117 ZNF674 1 99.0 Highly correlated
118 ZNF675 1 8.6 Weakly correlated
119 ZNF716 1 19.6 Weakly correlated
120 ZNF730 1 19.6 Weakly correlated
121 ZNF776 1 43.0 Weakly correlated
122 ZNF799 1 43.0 Weakly correlated
123 ZNF808 1 19.6 Weakly correlated
124 ZNF850 1 28.9 Weakly correlated
125 ZNF85 1 28.9 Weakly correlated
126 ZNF878 1 43.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF680 18 28.9 Weakly correlated
2 ZNF479 17 6.4 Weakly correlated
3 ZNF263 17 180.0 Weakly correlated
4 ZIM3 14 87.0 Moderately correlated
5 ZNF554 14 99.0 Highly correlated
6 ZFP37 13 99.0 Highly correlated
7 ZNF589 13 28.9 Weakly correlated
8 ZNF197 10 99.0 Highly correlated
9 ZNF723 8 15.2 Weakly correlated
10 ZNF584 8 99.0 Highly correlated
11 ZNF382 8 99.0 Highly correlated
12 ZNF534 8 19.6 Weakly correlated
13 ZNF528 7 43.0 Weakly correlated
14 ZNF18 7 160.0 Weakly correlated
15 ZNF485 6 94.0 Moderately correlated
16 ZNF175 6 94.0 Moderately correlated
17 ZNF317 6 99.0 Highly correlated
18 ZNF766 6 43.0 Weakly correlated
19 ZNF101 6 43.0 Weakly correlated
20 ZNF92 4 28.9 Weakly correlated
21 ZNF679 4 28.9 Weakly correlated
22 ZNF610 3 28.9 Weakly correlated
23 ZNF257 3 0.0 Weakly correlated
24 ZNF585A 2 99.0 Highly correlated
25 ZNF519 2 19.6 Weakly correlated
26 ZNF264 2 99.0 Highly correlated
27 ZNF490 2 43.0 Weakly correlated
28 ZKSCAN5 2 160.0 Weakly correlated
29 ZNF182 2 99.0 Highly correlated
30 ZNF2 2 99.0 Highly correlated
31 ZKSCAN8 2 160.0 Weakly correlated
32 ZNF792 2 94.0 Moderately correlated
33 ZNF671 1 94.0 Moderately correlated
34 ZFP28 1 99.0 Highly correlated
35 ZNF75A 1 94.0 Moderately correlated
36 ZNF597 1 94.0 Moderately correlated
37 ZNF75D 1 94.0 Moderately correlated
38 ZNF816 1 28.9 Weakly correlated
39 ZNF433 1 43.0 Weakly correlated
40 ZNF563 1 28.9 Weakly correlated
41 ZNF394 1 99.0 Highly correlated
42 ZNF230 1 28.9 Weakly correlated
43 ZNF347 1 43.0 Weakly correlated
44 ZFP69B 1 99.0 Highly correlated
45 ZKSCAN1 1 160.0 Weakly correlated
46 ZNF133 1 99.0 Highly correlated
47 ZNF324 1 99.0 Highly correlated
48 ZNF320 1 28.9 Weakly correlated
49 ZNF667 1 99.0 Highly correlated
50 ZNF282 1 319.0 Weakly correlated
51 ZNF701 1 28.9 Weakly correlated
52 ZNF440 1 28.9 Weakly correlated
53 ZNF350 1 99.0 Highly correlated
54 ZNF573 1 94.0 Moderately correlated
55 ZFP30 1 99.0 Highly correlated
56 ZNF677 1 99.0 Highly correlated
57 ZNF695 1 28.9 Weakly correlated
58 ZNF850 1 28.9 Weakly correlated
59 ZNF251 1 94.0 Moderately correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF175 94.0 Moderately correlated
2 ZNF197 99.0 Highly correlated
3 ZNF263 180.0 Weakly correlated
4 ZNF317 99.0 Highly correlated
5 ZNF554 99.0 Highly correlated
6 ZNF584 99.0 Highly correlated
7 ZNF589 28.9 Weakly correlated
8 ZNF723 15.2 Weakly correlated