L3 — repeat · ZRdb — KZFP & Repeats Database

LINE_L3

Name

L3
Repbase

L3
Type

LINE
Emergence

99.0 Mya
Dfam Id

DF0000362

Description :

L3 belongs to the CR1 clade of LINE retrotransposons present in mammals,marsupials, birds, reptiles, fishes and insects. L3 is composed ofancient and diverse subfamilies. The ORFs from the ancient, autonomousL3 have been partially reconstructed: ORF1 (~24-1332) and ORF2(~1611-4405).

Consensus sequence :

ccagcagccgggagnccaagaggcagtttgccgcggcagtttacaggagggagnttccagggggagccacaaaggactgtagttcatcttganacccaggaagtatggacaccgagggaactgttccagtgacctgcagggtatgtgctatgtttgtcttcctgcctgaggcgntcaccaattatgtgtgctataaatgcaagctggtctccctgctagaggagaaggtgaaagggcttgaggaacgcctctctacgctccggcttattagagaggatgaagggttcctaganaggatggaagaaataatccaggaaggaaancagaaagaaaaagattctgaggaggcggaagggaatcaaaaccagcgtcaagaggttggcgagtggaagaatgtgacacagaggaaaaggagaaagagaagaaactccgcaccactggagctanacaacaggtatgaggctcttcccacggagggtgaatccggaccttctgaagaagaagcagcattccatgctccacggaacaataaggaggattcgcaggcactagcaggtgcgaggaatcctgttactgnccccaggaggaagagacgcgtcgtggtggttggtgactccccgctgagggatacggaggcggccgtatgcagacctgacgtggctaatcgggaggtgtgctgtcttcctggagcgtgtatccgagacgtgacggagagcctgccaagactcatcaaacccgccgaccgctacccactcctgctgattcacgtgggaacgaatgacacagtcagaagaaacctggaatgcatctctagtgactttgaagtcctgggcaggaaactgaaggacttgggggcacaggtggtgttttcatctcttcttccagttgaaggtcgtgactttggaagagaaaggaggatatgggaagtgaacagctggctacgtagatggtgtcgaagaacaggatttggttttctggaccatggcttangataccagaacgatgggctcctggcnagggacggagtgcatctcacgaagaccgggaagaacgtgtttgncnggagactcgccgacctgatcaagaggactttaaactgaaatttgagggaaaggaaaaaaaatgcccagataaaactgtaaaaccggatactatggaggatancaggtatgacatagaaagaagaacaacagtggaggaggtgcccagtaattcncaggagaaaataacnggaaaagaagctagaaacaatacttatggcctcagatgtctatataccaatgcacagagtatgggtaataaanaaagtnaacttgaaattttaacacaaggaggtaaatacgatctcataggtatcaccgagacttggtgggatgggactcatgactggaatacggcgatggaagggtanaccttgttcaaaagaaacagatctantagaaggggaggnagagtagcactgtatgtcaagaagatatacacctgcgtggaaatccacgaacctgagggtagaagcgcgntggagagcatttgggtgaggataaaaggagagagaaacagaagtgatatcgttgtgggagtatactacagaccgcccggccagatggagganatggatgatgctttcctgatacagattacaaaactggcacagaggcaagatncagtagtgatgggggacttcaactatccggacatctgctggaagtctcattcngctaaaagcagagcatctgataaattcttgacttgccttgctgacaatttcatctctcagaaggtagaggaagcaacgaggggaactgctactctggacttaattctgaccaacaaggaagaactggttggtgaagtggaagtcgataggaaccttgggagaaagtgccatgtcatcttagagttcgtaatagccaagaaaggaaaagttaaaagtccacatatgttccagactttacgaggaaaagcagatttcaaaaaattcagagaaaagaggtatgattccatggccngagactcaaaaagaaagatggctcaagagggntgggaagctcttaaaaatgaaattctgactacaattacaaatgatccaatgaggaagaaaagagggagggcatttaagaaaccaacgtggctncatagagnattctctgatgtcagattttaaaaggacatgtatcagaagatggaaagaggacatataaccaaggacaaagagagagtancacaagcctgtaagaatagtgtcaggaaggctaaagcccagaatgagctgaggcttgcaaaaaaaaatgctaaggacaacaaaaanaaggcttttcaaagctatgttcggagcagaaggaaaaagaaagngacaggcccgctgcttggggcagatggcgtaatgttaacagatgacagagagaaagcagaactactcaactcctattttgcttccgtcttctctatcaaggagaatgatcttcagactggaaagggtagaacaaacatcgttaagagggaattgaagcccaagataggtgaggagatagtaagagagcacctagccgctttaaatgagttcaagtctccaggcccagacgaattacatcccagggtactgaaagaacttgcagatgtgatcgcggaaccgctgtcggtaatctttgagaaatcacggagaacggaagaggtgccagaagactggagacgggcaaatgtngtncctanttttaaaaagggaaaaaagatggattctgnaaactacagaccggtaagcttgacgtcgatccccggcaaaattctagaacggattattaaacagatggtttgtgagcacttagaaaaggaagcggtgatcactaggagccagcatgggttcactaagaacaagtcatgccaaactaacctcatttccttttttgatagggttactagactggtagatcaggggaatgccgtagacanagtgtatctggatttcagcaaggcatttgacaaagtctctcatgatatccttgtggacaagatggagaaatatgggctggatgatagtacagttaggtggattcgtagctggttgaacgactatacccaaaaggtgttgattaatggatcgatgtcaacctggagggaggtctctagtggcgtgccacagggctctgtccttggccctgtcctgttcaacatttttatcaatgacttggatgaagacatagaaggcatgcttatcaaatttgcagatgacacaaagctgggagggatagctaatacgntggatgacagaatcaagattcaaaangatctcgacaggctggaacgatgggccgaaaccaacaagatgaaatttaacagggataaatgtaaagtcctgcatttaggttcaaaaaatcaactgcacaagtacaggatggagaggatctggcttagcagcagttcacgtgaaaaagacctaggggttttagttgaccgcaagctcaatatgagccaacagtgtgatgtggctgccaaaaaagctaatgcaatcttaggctgcattaatagaagtatagtgtccagancaagggaggtaatagtcccgctgtactctgcgctggtcagaccacatctggagtattgcgttcagttctgggcgccacattttaagagggacattgacaaactggagcgcgtccagaggagagcgaccaggatggtgaagggtctggaaaccatgtcatatgaggaacggttgaaggaactggggatgtttagcctggagaagagaagacttagaggagacatgatagctgtcttcaaatatttgaagggctgtcatgtggaagagggattagacttattctgtgtggctccagagggcagaactaggaccaatgggtggaagttacagggaggcagatttcggctcaatataaggaagaactttctaacaatcagagctgtccaaaaatggaatgggctgcctcgngaggtagtgagctccccgtcactggaggtgttcaagcagaggctggatgaccacttgtcagggatgttgtagaagggattcctgcattggatgggaggttggactagatgacctctaaggtcccttccaactctgagattctgtgattctatc

Repeats structure :

Peak overlapping :

#	KZFP name	Record number	KZFP age(Mya)	Time correlation with Repeats
1	ZNF382	1590	99.0	Highly correlated
2	ZNF766	676	43.0	Weakly correlated
3	ZNF394	549	99.0	Highly correlated
4	ZNF263	525	180.0	Weakly correlated
5	ZFP37	389	99.0	Highly correlated
6	ZNF2	325	99.0	Highly correlated
7	ZNF317	317	99.0	Highly correlated
8	ZNF680	316	28.9	Weakly correlated
9	ZIM3	308	87.0	Moderately correlated
10	ZNF92	296	28.9	Weakly correlated
11	ZNF175	289	94.0	Moderately correlated
12	ZNF589	281	28.9	Weakly correlated
13	ZKSCAN1	268	160.0	Weakly correlated
14	ZFP69B	209	99.0	Highly correlated
15	ZNF286A	209	160.0	Weakly correlated
16	ZNF18	204	160.0	Weakly correlated
17	ZNF101	203	43.0	Weakly correlated
18	ZNF584	187	99.0	Highly correlated
19	ZNF479	165	6.4	Weakly correlated
20	ZKSCAN8	162	160.0	Weakly correlated
21	ZNF324	160	99.0	Highly correlated
22	ZNF197	159	99.0	Highly correlated
23	ZNF723	150	15.2	Weakly correlated
24	ZNF558	145	99.0	Highly correlated
25	ZNF679	143	28.9	Weakly correlated
26	ZNF534	138	19.6	Weakly correlated
27	ZNF554	116	99.0	Highly correlated
28	ZNF701	108	28.9	Weakly correlated
29	ZNF610	107	28.9	Weakly correlated
30	ZNF705B	105	28.9	Weakly correlated
31	ZNF597	102	94.0	Moderately correlated
32	ZNF793	101	99.0	Highly correlated
33	ZNF257	85	0.0	Weakly correlated
34	ZNF528	80	43.0	Weakly correlated
35	ZNF705D	80	28.9	Weakly correlated
36	ZNF75D	66	94.0	Moderately correlated
37	ZNF251	60	94.0	Moderately correlated
38	ZNF485	51	94.0	Moderately correlated
39	ZNF320	45	28.9	Weakly correlated
40	ZFP57	38	87.0	Moderately correlated
41	ZNF133	38	99.0	Highly correlated
42	ZNF140	35	99.0	Highly correlated
43	ZNF792	33	94.0	Moderately correlated
44	ZNF585B	32	99.0	Highly correlated
45	ZNF274	31	99.0	Highly correlated
46	ZNF429	29	28.9	Weakly correlated
47	ZNF486	27	8.6	Weakly correlated
48	ZNF490	27	43.0	Weakly correlated
49	ZNF28	25	28.9	Weakly correlated
50	ZNF506	24	28.9	Weakly correlated
51	ZNF264	22	99.0	Highly correlated
52	ZNF549	22	87.0	Moderately correlated
53	ZNF425	21	94.0	Moderately correlated
54	ZNF695	21	28.9	Weakly correlated
55	ZNF441	20	43.0	Weakly correlated
56	ZNF735	20	28.9	Weakly correlated
57	ZNF778	20	74.0	Weakly correlated
58	ZFP28	19	99.0	Highly correlated
59	ZNF141	19	43.0	Weakly correlated
60	ZNF547	19	74.0	Weakly correlated
61	ZNF563	19	28.9	Weakly correlated
62	ZNF585A	19	99.0	Highly correlated
63	ZNF273	18	28.9	Weakly correlated
64	ZNF641	18	99.0	Highly correlated
65	ZKSCAN5	17	160.0	Weakly correlated
66	ZNF182	16	99.0	Highly correlated
67	ZNF282	16	319.0	Weakly correlated
68	ZNF436	16	180.0	Weakly correlated
69	ZNF519	16	19.6	Weakly correlated
70	ZNF671	16	94.0	Moderately correlated
71	ZNF707	16	74.0	Weakly correlated
72	ZNF8	16	99.0	Highly correlated
73	ZNF202	15	160.0	Weakly correlated
74	ZNF331	15	94.0	Moderately correlated
75	ZNF573	13	94.0	Moderately correlated
76	ZNF26	12	99.0	Highly correlated
77	ZNF468	12	28.9	Weakly correlated
78	ZNF471	12	94.0	Moderately correlated
79	ZNF816	12	28.9	Weakly correlated
80	ZNF284	11	43.0	Weakly correlated
81	ZNF682	11	28.9	Weakly correlated
82	ZNF84	11	99.0	Highly correlated
83	ZNF440	10	28.9	Weakly correlated
84	ZNF677	10	99.0	Highly correlated
85	ZNF780A	10	43.0	Weakly correlated
86	ZNF786	10	99.0	Highly correlated
87	ZNF808	10	19.6	Weakly correlated
88	ZNF823	10	43.0	Weakly correlated
89	ZNF334	9	99.0	Highly correlated
90	ZNF350	9	99.0	Highly correlated
91	ZNF716	9	19.6	Weakly correlated
92	ZNF85	9	28.9	Weakly correlated
93	ZNF878	9	43.0	Weakly correlated
94	ZNF30	8	94.0	Moderately correlated
95	ZFP69	7	99.0	Highly correlated
96	ZNF12	7	99.0	Highly correlated
97	ZNF136	7	74.0	Weakly correlated
98	ZNF674	7	99.0	Highly correlated
99	ZNF93	7	8.6	Weakly correlated
100	ZNF337	6	43.0	Weakly correlated
101	ZNF44	6	43.0	Weakly correlated
102	ZNF510	6	99.0	Highly correlated
103	ZNF248	5	99.0	Highly correlated
104	ZNF567	5	99.0	Highly correlated
105	ZNF157	4	99.0	Highly correlated
106	ZNF169	4	94.0	Moderately correlated
107	ZNF189	4	99.0	Highly correlated
108	ZNF343	4	74.0	Weakly correlated
109	ZNF347	4	43.0	Weakly correlated
110	ZNF530	4	28.9	Weakly correlated
111	ZNF616	4	43.0	Weakly correlated
112	ZNF675	4	8.6	Weakly correlated
113	ZNF684	4	99.0	Highly correlated
114	ZNF727	4	19.6	Weakly correlated
115	ZNF730	4	19.6	Weakly correlated
116	ZNF777	4	319.0	Weakly correlated
117	ZNF799	4	43.0	Weakly correlated
118	ZNF879	4	99.0	Highly correlated
119	RBAK	3	99.0	Highly correlated
120	ZNF100	3	28.9	Weakly correlated
121	ZNF135	3	94.0	Moderately correlated
122	ZNF17	3	69.0	Weakly correlated
123	ZNF222	3	43.0	Weakly correlated
124	ZNF224	3	69.0	Weakly correlated
125	ZNF250	3	99.0	Highly correlated
126	ZNF287	3	99.0	Highly correlated
127	ZNF417	3	28.9	Weakly correlated
128	ZNF433	3	43.0	Weakly correlated
129	ZNF483	3	99.0	Highly correlated
130	ZNF559	3	74.0	Weakly correlated
131	ZNF595	3	43.0	Weakly correlated
132	ZNF700	3	28.9	Weakly correlated
133	ZNF75A	3	94.0	Moderately correlated
134	ZNF789	3	99.0	Highly correlated
135	ZNF81	3	99.0	Highly correlated
136	ZFP14	2	99.0	Highly correlated
137	ZFP30	2	99.0	Highly correlated
138	ZNF10	2	99.0	Highly correlated
139	ZNF114	2	28.9	Weakly correlated
140	ZNF160	2	74.0	Weakly correlated
141	ZNF214	2	99.0	Highly correlated
142	ZNF230	2	28.9	Weakly correlated
143	ZNF254	2	43.0	Weakly correlated
144	ZNF333	2	99.0	Highly correlated
145	ZNF354A	2	99.0	Highly correlated
146	ZNF41	2	99.0	Highly correlated
147	ZNF420	2	94.0	Moderately correlated
148	ZNF43	2	43.0	Weakly correlated
149	ZNF560	2	43.0	Weakly correlated
150	ZNF582	2	99.0	Highly correlated
151	ZNF587	2	28.9	Weakly correlated
152	ZNF605	2	99.0	Highly correlated
153	ZNF607	2	43.0	Weakly correlated
154	ZNF611	2	19.6	Weakly correlated
155	ZNF627	2	74.0	Weakly correlated
156	ZNF667	2	99.0	Highly correlated
157	ZNF669	2	43.0	Weakly correlated
158	ZNF681	2	28.9	Weakly correlated
159	ZNF736	2	43.0	Weakly correlated
160	ZNF765	2	8.6	Weakly correlated
161	ZNF845	2	28.9	Weakly correlated
162	ZNF91	2	6.0	Weakly correlated
163	PRDM9	1	0.0	Weakly correlated
164	ZFP90	1	99.0	Highly correlated
165	ZNF124	1	43.0	Weakly correlated
166	ZNF132	1	94.0	Moderately correlated
167	ZNF184	1	99.0	Highly correlated
168	ZNF205	1	180.0	Weakly correlated
169	ZNF267	1	43.0	Weakly correlated
170	ZNF304	1	99.0	Highly correlated
171	ZNF33A	1	99.0	Highly correlated
172	ZNF354B	1	99.0	Highly correlated
173	ZNF354C	1	99.0	Highly correlated
174	ZNF418	1	43.0	Weakly correlated
175	ZNF431	1	28.9	Weakly correlated
176	ZNF443	1	19.6	Weakly correlated
177	ZNF480	1	43.0	Weakly correlated
178	ZNF527	1	99.0	Highly correlated
179	ZNF562	1	28.9	Weakly correlated
180	ZNF566	1	99.0	Highly correlated
181	ZNF568	1	99.0	Highly correlated
182	ZNF570	1	99.0	Highly correlated
183	ZNF571	1	99.0	Highly correlated
184	ZNF577	1	94.0	Moderately correlated
185	ZNF578	1	15.2	Weakly correlated
186	ZNF583	1	99.0	Highly correlated
187	ZNF586	1	43.0	Weakly correlated
188	ZNF596	1	94.0	Moderately correlated
189	ZNF613	1	99.0	Highly correlated
190	ZNF626	1	0.0	Weakly correlated
191	ZNF749	1	28.9	Weakly correlated
192	ZNF77	1	87.0	Moderately correlated
193	ZNF780B	1	74.0	Weakly correlated
194	ZNF813	1	28.9	Weakly correlated

KZFPs Motif in Repeats :

#	KZFP name	Record number	KZFP age(Mya)	Time correlation with Repeats
1	ZIM3	105	87.0	Moderately correlated
2	ZNF680	76	28.9	Weakly correlated
3	ZNF263	72	180.0	Weakly correlated
4	ZNF479	72	6.4	Weakly correlated
5	ZNF723	64	15.2	Weakly correlated
6	ZNF534	49	19.6	Weakly correlated
7	ZNF766	48	43.0	Weakly correlated
8	ZNF382	40	99.0	Highly correlated
9	ZNF101	31	43.0	Weakly correlated
10	ZNF317	30	99.0	Highly correlated
11	ZNF793	29	99.0	Highly correlated
12	ZNF485	28	94.0	Moderately correlated
13	ZNF554	25	99.0	Highly correlated
14	ZFP37	23	99.0	Highly correlated
15	ZNF589	23	28.9	Weakly correlated
16	ZNF75D	22	94.0	Moderately correlated
17	ZNF528	22	43.0	Weakly correlated
18	ZNF701	19	28.9	Weakly correlated
19	ZNF175	18	94.0	Moderately correlated
20	ZNF197	18	99.0	Highly correlated
21	ZNF584	18	99.0	Highly correlated
22	ZNF257	16	0.0	Weakly correlated
23	ZNF133	15	99.0	Highly correlated
24	ZNF597	15	94.0	Moderately correlated
25	ZNF735	15	28.9	Weakly correlated
26	ZNF92	13	28.9	Weakly correlated
27	ZNF679	12	28.9	Weakly correlated
28	ZNF18	11	160.0	Weakly correlated
29	ZFP57	10	87.0	Moderately correlated
30	ZNF324	10	99.0	Highly correlated
31	ZKSCAN1	9	160.0	Weakly correlated
32	ZKSCAN5	8	160.0	Weakly correlated
33	ZNF429	8	28.9	Weakly correlated
34	ZNF2	8	99.0	Highly correlated
35	ZNF558	8	99.0	Highly correlated
36	ZNF585A	8	99.0	Highly correlated
37	ZNF140	7	99.0	Highly correlated
38	ZNF320	7	28.9	Weakly correlated
39	ZNF549	6	87.0	Moderately correlated
40	ZNF610	6	28.9	Weakly correlated
41	ZNF490	6	43.0	Weakly correlated
42	ZNF573	6	94.0	Moderately correlated
43	ZNF705D	6	28.9	Weakly correlated
44	ZFP69B	5	99.0	Highly correlated
45	ZNF141	5	43.0	Weakly correlated
46	ZNF440	5	28.9	Weakly correlated
47	ZNF677	5	99.0	Highly correlated
48	ZNF705B	5	28.9	Weakly correlated
49	ZNF671	5	94.0	Moderately correlated
50	ZNF286A	5	160.0	Weakly correlated
51	ZNF506	4	28.9	Weakly correlated
52	ZNF695	4	28.9	Weakly correlated
53	ZNF202	4	160.0	Weakly correlated
54	ZNF716	4	19.6	Weakly correlated
55	ZNF44	4	43.0	Weakly correlated
56	ZNF264	4	99.0	Highly correlated
57	ZNF823	4	43.0	Weakly correlated
58	ZNF28	4	28.9	Weakly correlated
59	ZFP28	3	99.0	Highly correlated
60	ZNF251	3	94.0	Moderately correlated
61	ZNF282	3	319.0	Weakly correlated
62	ZNF684	3	99.0	Highly correlated
63	ZNF816	3	28.9	Weakly correlated
64	ZNF189	3	99.0	Highly correlated
65	ZNF350	3	99.0	Highly correlated
66	ZNF674	3	99.0	Highly correlated
67	ZNF273	3	28.9	Weakly correlated
68	ZNF468	3	28.9	Weakly correlated
69	ZNF585B	3	99.0	Highly correlated
70	ZNF436	3	180.0	Weakly correlated
71	ZNF530	3	28.9	Weakly correlated
72	ZNF433	3	43.0	Weakly correlated
73	ZNF778	3	74.0	Weakly correlated
74	ZFP69	2	99.0	Highly correlated
75	ZNF100	2	28.9	Weakly correlated
76	ZNF425	2	94.0	Moderately correlated
77	ZNF707	2	74.0	Weakly correlated
78	ZNF84	2	99.0	Highly correlated
79	ZNF331	2	94.0	Moderately correlated
80	ZNF333	2	99.0	Highly correlated
81	ZNF789	2	99.0	Highly correlated
82	ZNF471	2	94.0	Moderately correlated
83	ZNF792	2	94.0	Moderately correlated
84	ZNF81	2	99.0	Highly correlated
85	ZNF641	2	99.0	Highly correlated
86	ZNF780A	2	43.0	Weakly correlated
87	ZNF26	2	99.0	Highly correlated
88	ZNF563	2	28.9	Weakly correlated
89	PRDM9	1	0.0	Weakly correlated
90	ZKSCAN8	1	160.0	Weakly correlated
91	ZNF10	1	99.0	Highly correlated
92	ZNF12	1	99.0	Highly correlated
93	ZNF17	1	69.0	Weakly correlated
94	ZNF33A	1	99.0	Highly correlated
95	ZNF510	1	99.0	Highly correlated
96	ZNF254	1	43.0	Weakly correlated
97	ZNF287	1	99.0	Highly correlated
98	ZNF417	1	28.9	Weakly correlated
99	ZNF736	1	43.0	Weakly correlated
100	ZNF75A	1	94.0	Moderately correlated
101	ZNF519	1	19.6	Weakly correlated
102	ZNF667	1	99.0	Highly correlated
103	ZNF30	1	94.0	Moderately correlated
104	ZNF347	1	43.0	Weakly correlated
105	ZNF394	1	99.0	Highly correlated
106	ZNF749	1	28.9	Weakly correlated
107	ZNF248	1	99.0	Highly correlated
108	ZNF354A	1	99.0	Highly correlated
109	ZNF611	1	19.6	Weakly correlated
110	ZNF675	1	8.6	Weakly correlated
111	ZNF627	1	74.0	Weakly correlated
112	ZNF337	1	43.0	Weakly correlated
113	ZNF483	1	99.0	Highly correlated
114	ZNF587	1	28.9	Weakly correlated
115	ZNF682	1	28.9	Weakly correlated
116	ZNF799	1	43.0	Weakly correlated

KZFPs Motif in Repeats Consensus :

#	KZFP name	KZFP age(Mya)	Time correlation with Repeats
1	ZFP37	99.0	Highly correlated
2	ZFP57	87.0	Moderately correlated
3	ZKSCAN1	160.0	Weakly correlated
4	ZKSCAN5	160.0	Weakly correlated
5	ZNF175	94.0	Moderately correlated
6	ZNF18	160.0	Weakly correlated
7	ZNF197	99.0	Highly correlated
8	ZNF257	0.0	Weakly correlated
9	ZNF263	180.0	Weakly correlated
10	ZNF2	99.0	Highly correlated
11	ZNF317	99.0	Highly correlated
12	ZNF490	43.0	Weakly correlated
13	ZNF528	43.0	Weakly correlated
14	ZNF554	99.0	Highly correlated
15	ZNF558	99.0	Highly correlated
16	ZNF584	99.0	Highly correlated
17	ZNF589	28.9	Weakly correlated
18	ZNF597	94.0	Moderately correlated
19	ZNF610	28.9	Weakly correlated
20	ZNF680	28.9	Weakly correlated
21	ZNF701	28.9	Weakly correlated
22	ZNF75D	94.0	Moderately correlated
23	ZNF793	99.0	Highly correlated
24	ZNF92	28.9	Weakly correlated