ZRdb KZFP & Repeats
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LINE_L2-1_AMI

  • Name
    L2-1_AMI
  • Repbase
    L2-1_AMi
  • Type
    LINE
  • Emergence
    319.0 Mya
  • Dfam Id
    DF0001334
Description :

Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tccataccacgtcatccnagcntgctgcttccncctctncaactctctcctttctttccttctgtccactgaactgctgcagcgtctctaatgacctcttcctagccaaatctcagaaccagtactccatcctcatcctccttgacctgtcagccgcctttgacacagtcgaccatgctcttcttgaaatcttgtcctcccttggcttccgtgactctgtcctccgtctcctcctacctctctaatcgctccttggcaattcttccttcctcccactttctgtgggggttccacagggctctgtccttggtccccttctcttctctctacaccttatctctgggtaatctcatccgcaaacacaaattcaactaccatctgttgactcacagatctacctctctactccagacctgtctccttctgtccaaactaaaatctcggcctgtctctctgacatctcctcgtggatgtctagccgtcagctcaagctcaacatggcctaaaacagagctcttaatcttccccccaagcctnctccccattcccttttctcgatcactgtggacaacaccaccatcctgcctgtcactcaggcccgtaacctgggcgtcatcttcgactcggacctctctctaggtcctcacatccaggctatgtctaaatcttgcagattctttctgcataacatctctaagatacggcctttcctatccatccacacagctaaaactctcgtccagtctcacatctcgattactgcaacatccttttctctggccttgacaaatgcaatcttgccccgctcatatccattcagaatgctgctgcaaagatcattttcctagcccgtcgctttgaccacgtcacccctctctttgcatccctactggctcccccttctctatcgatcaaacataagctacttgtcttcactttcaaggcccttcacggcctatcctacctgtctatcatctctcattcactatcgagagttgactcccgcctccgatcggcccatgatgccagcctccatcgcccacttgttaaattttcaaacagcacttcctttttcctatgctgctcccctcatgcttgggaggagctccccgtaaacatccgcaaatcacattattctccttcaaatccctccttaaactctcctttgccgtgatgcctacaaaaactgacaacggttaggctgctggtgtgctgagaccactgcctattntgct
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 37 99.0 Weakly correlated
2 ZNF766 26 43.0 Weakly correlated
3 ZNF317 25 99.0 Weakly correlated
4 ZNF263 22 180.0 Weakly correlated
5 ZNF479 19 6.4 Weakly correlated
6 ZFP37 18 99.0 Weakly correlated
7 ZNF680 16 28.9 Weakly correlated
8 ZNF394 14 99.0 Weakly correlated
9 ZNF2 13 99.0 Weakly correlated
10 ZKSCAN1 11 160.0 Weakly correlated
11 ZNF175 10 94.0 Weakly correlated
12 ZNF589 10 28.9 Weakly correlated
13 ZKSCAN8 9 160.0 Weakly correlated
14 ZFP69B 9 99.0 Weakly correlated
15 ZIM3 9 87.0 Weakly correlated
16 ZNF197 9 99.0 Weakly correlated
17 ZNF584 8 99.0 Weakly correlated
18 ZNF101 7 43.0 Weakly correlated
19 ZNF18 7 160.0 Weakly correlated
20 ZNF701 7 28.9 Weakly correlated
21 ZNF723 6 15.2 Weakly correlated
22 ZNF324 5 99.0 Weakly correlated
23 ZNF140 4 99.0 Weakly correlated
24 ZNF558 4 99.0 Weakly correlated
25 ZNF554 4 99.0 Weakly correlated
26 ZNF274 3 99.0 Weakly correlated
27 ZNF510 3 99.0 Weakly correlated
28 ZNF528 3 43.0 Weakly correlated
29 ZNF823 2 43.0 Weakly correlated
30 ZNF485 2 94.0 Weakly correlated
31 ZNF610 2 28.9 Weakly correlated
32 ZNF695 2 28.9 Weakly correlated
33 ZNF75A 2 94.0 Weakly correlated
34 ZNF257 2 0.0 Weakly correlated
35 ZNF429 2 28.9 Weakly correlated
36 ZNF114 1 28.9 Weakly correlated
37 ZNF679 1 28.9 Weakly correlated
38 ZNF273 1 28.9 Weakly correlated
39 ZNF182 1 99.0 Weakly correlated
40 ZNF705B 1 28.9 Weakly correlated
41 ZNF707 1 74.0 Weakly correlated
42 ZNF169 1 94.0 Weakly correlated
43 ZNF735 1 28.9 Weakly correlated
44 ZNF133 1 99.0 Weakly correlated
45 ZNF677 1 99.0 Weakly correlated
46 ZNF778 1 74.0 Weakly correlated
47 ZNF786 1 99.0 Weakly correlated
48 ZNF792 1 94.0 Weakly correlated
49 ZNF808 1 19.6 Weakly correlated
50 ZNF100 1 28.9 Weakly correlated
51 ZNF84 1 99.0 Weakly correlated
52 ZNF8 1 99.0 Weakly correlated
53 ZNF331 1 94.0 Weakly correlated
54 ZNF43 1 43.0 Weakly correlated
55 ZNF506 1 28.9 Weakly correlated
56 ZNF433 1 43.0 Weakly correlated
57 ZNF519 1 19.6 Weakly correlated
58 ZNF534 1 19.6 Weakly correlated
59 ZNF547 1 74.0 Weakly correlated
60 ZNF347 1 43.0 Weakly correlated
61 ZNF334 1 99.0 Weakly correlated
62 ZNF468 1 28.9 Weakly correlated
63 ZNF585A 1 99.0 Weakly correlated
64 ZNF585B 1 99.0 Weakly correlated
65 ZNF28 1 28.9 Weakly correlated
66 ZNF597 1 94.0 Weakly correlated
67 ZNF287 1 99.0 Weakly correlated
68 ZNF669 1 43.0 Weakly correlated
69 ZNF671 1 94.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF479 12 6.4 Weakly correlated
2 ZIM3 6 87.0 Weakly correlated
3 ZNF680 6 28.9 Weakly correlated
4 ZNF317 5 99.0 Weakly correlated
5 ZNF263 5 180.0 Weakly correlated
6 ZFP37 3 99.0 Weakly correlated
7 ZNF723 2 15.2 Weakly correlated
8 ZNF197 2 99.0 Weakly correlated
9 ZNF589 2 28.9 Weakly correlated
10 ZNF175 2 94.0 Weakly correlated
11 ZNF677 1 99.0 Weakly correlated
12 ZNF735 1 28.9 Weakly correlated
13 ZNF534 1 19.6 Weakly correlated
14 ZNF334 1 99.0 Weakly correlated
15 ZNF28 1 28.9 Weakly correlated
16 ZNF823 1 43.0 Weakly correlated
17 ZNF485 1 94.0 Weakly correlated
18 ZNF468 1 28.9 Weakly correlated
19 ZNF257 1 0.0 Weakly correlated
20 ZNF701 1 28.9 Weakly correlated
21 ZNF528 1 43.0 Weakly correlated
22 ZNF585B 1 99.0 Weakly correlated
23 ZNF84 1 99.0 Weakly correlated
24 ZNF597 1 94.0 Weakly correlated
25 ZNF671 1 94.0 Weakly correlated
26 ZNF585A 1 99.0 Weakly correlated
27 ZNF584 1 99.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats