ZRdb KZFP & Repeats
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LINE_L1PREC2_3END

  • Name
    L1PREC2_3END
  • Repbase
    L1PREC2
  • Type
    LINE
  • Emergence
    43.0 Mya
  • Dfam Id
    DF0000355
Description :

Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
ctaatatccagcatctataaggaacttaaacaaatttacaagaaaaaaacaaacaaccccattaaaaagtgggcaaaggacatgaacagacacttttcaaaagaagacatacatgcggccaacaagcatatgaaaaaaagctcaatatcactgatcattagagaaatgcaaatcaaaaccacaatgagataccatctcacaccagtcagaatggctattattaaaaagtcaaaaaataacagatgctggcgaggttgcggagaaaagggaacgcttatacactgttggtgggagtgtaaattagttcaaccattgtggaaagcagtgtggcgattcctcaaagagctaaaaacagaactaccattcgacccagcaatcccattactgggtatatacccaaaggaatataaatcattctaccataaagacacatgcacgcgnatgttcattgcagcactattcacaatagcaaagacatggaatcaacctaaatgcccatcaatggcagactggataaagaaaatgtggtacatatacaccatggaatactatgcagccataaaaaagaacgagatcatgtcctttgcgggaacatggatggagctggaggccattatccttagcaaactaacgcaggaacagaaaaccaaataccgcatgttctcacttataagtgggagctaaatgatgagaacncatggacacaaagaggggaacaacagacactggggcctacttgagggtggagggtgggaggagggagaggancagaaaaaataactattgggtactaggcttagtacctgggtgacgaaataatctgtacaacaaacccccgtgacacgagtttacctatataacaaacctgcacatgtacccctgaacctaaaataaaagttnaaaaaaa
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 669 99.0 Weakly correlated
2 ZNF486 396 8.6 Weakly correlated
3 ZNF92 299 28.9 Moderately correlated
4 ZNF84 287 99.0 Weakly correlated
5 ZNF705B 261 28.9 Moderately correlated
6 ZNF490 237 43.0 Highly correlated
7 ZNF263 213 180.0 Weakly correlated
8 ZNF705D 179 28.9 Moderately correlated
9 ZNF248 144 99.0 Weakly correlated
10 ZIM3 143 87.0 Weakly correlated
11 ZNF679 127 28.9 Moderately correlated
12 ZNF8 110 99.0 Weakly correlated
13 ZNF317 105 99.0 Weakly correlated
14 ZNF558 99 99.0 Weakly correlated
15 ZNF433 96 43.0 Highly correlated
16 ZNF793 79 99.0 Weakly correlated
17 ZNF723 62 15.2 Weakly correlated
18 ZNF766 48 43.0 Highly correlated
19 ZNF680 47 28.9 Moderately correlated
20 ZNF485 33 94.0 Weakly correlated
21 ZNF786 32 99.0 Weakly correlated
22 ZNF479 28 6.4 Weakly correlated
23 ZNF274 25 99.0 Weakly correlated
24 ZNF324 25 99.0 Weakly correlated
25 ZNF394 24 99.0 Weakly correlated
26 ZNF506 24 28.9 Moderately correlated
27 ZNF250 23 99.0 Weakly correlated
28 ZFP57 21 87.0 Weakly correlated
29 ZNF136 21 74.0 Weakly correlated
30 ZNF2 21 99.0 Weakly correlated
31 ZNF133 19 99.0 Weakly correlated
32 ZFP37 18 99.0 Weakly correlated
33 ZNF534 18 19.6 Weakly correlated
34 ZNF175 17 94.0 Weakly correlated
35 ZFP90 16 99.0 Weakly correlated
36 ZNF182 16 99.0 Weakly correlated
37 ZNF18 15 160.0 Weakly correlated
38 ZNF251 15 94.0 Weakly correlated
39 ZNF10 14 99.0 Weakly correlated
40 ZNF257 13 0.0 Weakly correlated
41 ZNF589 13 28.9 Moderately correlated
42 ZNF75D 13 94.0 Weakly correlated
43 ZNF28 12 28.9 Moderately correlated
44 ZNF483 12 99.0 Weakly correlated
45 ZNF585A 12 99.0 Weakly correlated
46 ZFP69B 11 99.0 Weakly correlated
47 ZNF101 11 43.0 Highly correlated
48 ZNF287 11 99.0 Weakly correlated
49 ZNF197 10 99.0 Weakly correlated
50 ZNF440 10 28.9 Moderately correlated
51 ZNF584 10 99.0 Weakly correlated
52 ZKSCAN1 9 160.0 Weakly correlated
53 ZKSCAN8 9 160.0 Weakly correlated
54 ZNF141 9 43.0 Highly correlated
55 ZNF160 9 74.0 Weakly correlated
56 ZNF425 9 94.0 Weakly correlated
57 ZNF320 8 28.9 Moderately correlated
58 ZNF429 8 28.9 Moderately correlated
59 ZNF554 8 99.0 Weakly correlated
60 ZNF597 8 94.0 Weakly correlated
61 ZNF41 7 99.0 Weakly correlated
62 ZNF468 7 28.9 Moderately correlated
63 ZNF528 7 43.0 Highly correlated
64 ZNF585B 7 99.0 Weakly correlated
65 ZNF792 7 94.0 Weakly correlated
66 ZNF223 6 43.0 Highly correlated
67 ZNF230 6 28.9 Moderately correlated
68 ZNF547 6 74.0 Weakly correlated
69 ZNF701 6 28.9 Moderately correlated
70 ZFP28 5 99.0 Weakly correlated
71 ZNF114 5 28.9 Moderately correlated
72 ZNF17 5 69.0 Weakly correlated
73 ZNF202 5 160.0 Weakly correlated
74 ZNF284 5 43.0 Highly correlated
75 ZNF707 5 74.0 Weakly correlated
76 ZNF222 4 43.0 Highly correlated
77 ZNF337 4 43.0 Highly correlated
78 ZNF519 4 19.6 Weakly correlated
79 ZNF610 4 28.9 Moderately correlated
80 ZNF140 3 99.0 Weakly correlated
81 ZNF264 3 99.0 Weakly correlated
82 ZNF30 3 94.0 Weakly correlated
83 ZNF354A 3 99.0 Weakly correlated
84 ZNF471 3 94.0 Weakly correlated
85 ZNF549 3 87.0 Weakly correlated
86 ZNF641 3 99.0 Weakly correlated
87 ZNF677 3 99.0 Weakly correlated
88 ZNF695 3 28.9 Moderately correlated
89 ZNF735 3 28.9 Moderately correlated
90 ZNF765 3 8.6 Weakly correlated
91 ZNF845 3 28.9 Moderately correlated
92 ZNF93 3 8.6 Weakly correlated
93 ZNF157 2 99.0 Weakly correlated
94 ZNF211 2 94.0 Weakly correlated
95 ZNF253 2 19.6 Weakly correlated
96 ZNF334 2 99.0 Weakly correlated
97 ZNF418 2 43.0 Highly correlated
98 ZNF441 2 43.0 Highly correlated
99 ZNF44 2 43.0 Highly correlated
100 ZNF510 2 99.0 Weakly correlated
101 ZNF560 2 43.0 Highly correlated
102 ZNF567 2 99.0 Weakly correlated
103 ZNF611 2 19.6 Weakly correlated
104 ZNF682 2 28.9 Moderately correlated
105 ZNF700 2 28.9 Moderately correlated
106 ZNF705E 2 0.0 Weakly correlated
107 ZNF730 2 19.6 Weakly correlated
108 ZNF777 2 319.0 Weakly correlated
109 ZNF816 2 28.9 Moderately correlated
110 ZNF823 2 43.0 Highly correlated
111 ZNF879 2 99.0 Weakly correlated
112 ZFP69 1 99.0 Weakly correlated
113 ZFP82 1 99.0 Weakly correlated
114 ZKSCAN5 1 160.0 Weakly correlated
115 ZNF135 1 94.0 Weakly correlated
116 ZNF169 1 94.0 Weakly correlated
117 ZNF180 1 99.0 Weakly correlated
118 ZNF181 1 94.0 Weakly correlated
119 ZNF26 1 99.0 Weakly correlated
120 ZNF273 1 28.9 Moderately correlated
121 ZNF282 1 319.0 Weakly correlated
122 ZNF331 1 94.0 Weakly correlated
123 ZNF33A 1 99.0 Weakly correlated
124 ZNF417 1 28.9 Moderately correlated
125 ZNF550 1 94.0 Weakly correlated
126 ZNF555 1 94.0 Weakly correlated
127 ZNF562 1 28.9 Moderately correlated
128 ZNF563 1 28.9 Moderately correlated
129 ZNF586 1 43.0 Highly correlated
130 ZNF616 1 43.0 Highly correlated
131 ZNF630 1 94.0 Weakly correlated
132 ZNF669 1 43.0 Highly correlated
133 ZNF675 1 8.6 Weakly correlated
134 ZNF727 1 19.6 Weakly correlated
135 ZNF736 1 43.0 Highly correlated
136 ZNF763 1 15.2 Weakly correlated
137 ZNF780A 1 43.0 Highly correlated
138 ZNF808 1 19.6 Weakly correlated
139 ZNF878 1 43.0 Highly correlated
140 ZNF91 1 6.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF486 288 8.6 Weakly correlated
2 ZNF84 267 99.0 Weakly correlated
3 ZNF92 228 28.9 Moderately correlated
4 ZNF490 209 43.0 Highly correlated
5 ZNF263 151 180.0 Weakly correlated
6 ZNF382 145 99.0 Weakly correlated
7 ZNF248 136 99.0 Weakly correlated
8 ZIM3 100 87.0 Weakly correlated
9 ZNF8 93 99.0 Weakly correlated
10 ZNF433 75 43.0 Highly correlated
11 ZNF793 50 99.0 Weakly correlated
12 ZNF723 33 15.2 Weakly correlated
13 ZNF485 27 94.0 Weakly correlated
14 ZNF558 25 99.0 Weakly correlated
15 ZNF317 23 99.0 Weakly correlated
16 ZNF250 21 99.0 Weakly correlated
17 ZNF786 20 99.0 Weakly correlated
18 ZNF680 16 28.9 Moderately correlated
19 ZFP90 16 99.0 Weakly correlated
20 ZNF136 16 74.0 Weakly correlated
21 ZNF479 15 6.4 Weakly correlated
22 ZNF534 15 19.6 Weakly correlated
23 ZNF10 14 99.0 Weakly correlated
24 ZNF324 14 99.0 Weakly correlated
25 ZNF679 13 28.9 Moderately correlated
26 ZNF133 12 99.0 Weakly correlated
27 ZNF506 11 28.9 Moderately correlated
28 ZFP57 9 87.0 Weakly correlated
29 ZNF440 8 28.9 Moderately correlated
30 ZNF75D 6 94.0 Weakly correlated
31 ZNF766 6 43.0 Highly correlated
32 ZNF160 6 74.0 Weakly correlated
33 ZNF585A 5 99.0 Weakly correlated
34 ZNF101 5 43.0 Highly correlated
35 ZNF287 5 99.0 Weakly correlated
36 ZNF257 4 0.0 Weakly correlated
37 ZNF28 4 28.9 Moderately correlated
38 ZNF792 4 94.0 Weakly correlated
39 ZNF425 4 94.0 Weakly correlated
40 ZNF337 3 43.0 Highly correlated
41 ZNF18 3 160.0 Weakly correlated
42 ZNF597 3 94.0 Weakly correlated
43 ZNF141 3 43.0 Highly correlated
44 ZNF701 2 28.9 Moderately correlated
45 ZNF2 2 99.0 Weakly correlated
46 ZNF274 2 99.0 Weakly correlated
47 ZNF705D 2 28.9 Moderately correlated
48 ZFP28 2 99.0 Weakly correlated
49 ZNF429 2 28.9 Moderately correlated
50 ZNF264 2 99.0 Weakly correlated
51 ZNF695 2 28.9 Moderately correlated
52 ZNF354A 2 99.0 Weakly correlated
53 ZNF140 2 99.0 Weakly correlated
54 ZNF483 2 99.0 Weakly correlated
55 ZNF707 1 74.0 Weakly correlated
56 ZNF44 1 43.0 Highly correlated
57 ZNF560 1 43.0 Highly correlated
58 ZNF26 1 99.0 Weakly correlated
59 ZNF468 1 28.9 Moderately correlated
60 ZNF675 1 8.6 Weakly correlated
61 ZNF677 1 99.0 Weakly correlated
62 ZNF320 1 28.9 Moderately correlated
63 ZNF471 1 94.0 Weakly correlated
64 ZNF682 1 28.9 Moderately correlated
65 ZNF550 1 94.0 Weakly correlated
66 ZNF17 1 69.0 Weakly correlated
67 ZFP37 1 99.0 Weakly correlated
68 ZFP69 1 99.0 Weakly correlated
69 ZFP82 1 99.0 Weakly correlated
70 ZNF30 1 94.0 Weakly correlated
71 ZNF589 1 28.9 Moderately correlated
72 ZNF705B 1 28.9 Moderately correlated
73 ZNF33A 1 99.0 Weakly correlated
74 ZNF567 1 99.0 Weakly correlated
75 ZNF182 1 99.0 Weakly correlated
76 ZNF211 1 94.0 Weakly correlated
77 ZNF879 1 99.0 Weakly correlated
78 ZNF554 1 99.0 Weakly correlated
79 ZNF584 1 99.0 Weakly correlated
80 ZNF197 1 99.0 Weakly correlated
81 ZNF202 1 160.0 Weakly correlated
82 ZNF417 1 28.9 Moderately correlated
83 ZNF641 1 99.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZFP57 87.0 Weakly correlated
2 ZNF248 99.0 Weakly correlated
3 ZNF263 180.0 Weakly correlated
4 ZNF317 99.0 Weakly correlated
5 ZNF486 8.6 Weakly correlated
6 ZNF75D 94.0 Weakly correlated
7 ZNF84 99.0 Weakly correlated
8 ZNF92 28.9 Moderately correlated