ZRdb KZFP & Repeats
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LINE_L1PB_ORF2

  • Name
    L1PB_ORF2
  • Repbase
    No find
  • Type
    LINE
  • Emergence
    74.0 Mya
  • Dfam Id
    DF0000354
Description :

Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
atgaatggaatagtacctcacatctcaatactaacgttgaatgtaaatggcctaaatgctccacttaaaagatacagaatngcagaatggataagaattcaccaaccaagtatctgctgccttcaagagactcacctaacacataaggactcacataaacttaaggtaaaggggtggaaaaagacattccatgcaaatggacaccaaaagcgagcaggagtagctattcttatatcagacaaaacaaactttaaagcaacagcagttaaaaaagacaaagagggacattatataatgataaaaggnctngtccaacaggaaaatatcacaatcctaaatatatatgcacctaacactggagctcccaaatttataaaacaattactantagacctaagaaatgagatagacagcaacacaataatagtgggggacttcaatactccactgacagcactagacaggtcatcaagacagaaagtcaacaaagaaacaatggacttaaactataccctggaacaaatggacttaacagatatttacagaacattctacccaacaaccgcagaatatacattctattcancagcgcatggaacnttctccaagatagaccatatgataggccacaaaacgagcctcaataaatttaagaaaatcgaaattatatcaagcactctctcagaccacagtggaataaaactggaaatcaactccaaaaggaaccctcaaaaccatgcaaatacatggaaattaaataacctgctcctgaatgatcattgggtcaanaatgaaatcaagatggaaattnaaaaattcttcgaactgaacgacaatagtgacacaacctatcaaaacctctgggatacagcaaaggcggtgctaagaggaaagttcatagccctaaatgcctacatcaaaaagtctgaaagagcacaaacagacaatctaaggtcacacctcaaggaactagagaaacaagaacaaaccaaacccaaacccagcagaagaaaggaaataaccaagatcagagcagaactaaatgaaattgaaacaaacaaaaaaatacaaaagataaatgaaacaaaaagctggttctttgaaaagataaataaaattgatagaccattagcgagattaaccaagaaaagaagagagaagatccaaataagctcaattagaaacgaaacgggagatattacaaccgacaccacagaaatacaaaagatcattcaaggctactatgaacacctttacgcgcataaactagaaaacctagaggagatggataaattcctggaaanatacaaccctcctagnttaaatcaggaagaantaganaccctgaacagaccaataacaagcagcgagattgaaatggtaattnaaaaattaccaacaaaaaaaagtccaggaccagacggattcacagcngaattctaccagacattcaaagaagaattggtaccaatcctattgacactattccacaagatagagaaagagggaatcctccctaaatcattctatgaagccagtatcaccctaataccaaaaccaggaaaggacataacnaaaaaagaaaactacagaccaatatccctgatgaacatagatgcnaaaatcctcaacaaaatactagctaaccgaatccaacagcatatcaaaaagataatccaccatgatcaagtgggtttcataccagggatgcagggatggtttaacatacgcaagtcaataaatgtgatacaccacataaacagaattaaaaacaaaaatcacatgatcatctcaatagatgcagaaaaagcatttgacaaaatccagcatccctttatgattaaaaccctcagcaaaatcggcatanaagggacataccttaangtaataaaagccatctatgacaaacccacagccaacatnatactgaatggggaaaagttgaaagcattccccctgagaactggaacaagacaaggatgcccactctcaccacttctnttcaacatagtactggaagtcctagccagagcaatcagacaagagaaagaaataaagggcatccaaatcggtaaagaggaagtcaaactgtcgctgtttgctgatgatatgatcgtntacctagaaaaccctaaagactcctccagaaagctcctagaactgataaangaattcagcaaagtttcnggatacaaaattaatgtacacaaatcagtagctctnctatacaccaacagcgaccaagctgagaatcaaatcaagaactcaaccccttttacaatagctgcaaaaaaaataaaatacttaggaatatacctaaccaaggaggtgaaagacctctacaaggaaaactacaaaacactgctgaaagaaatcatagacgacacaaacaaatggaaacacatcccatgctcatggatgggtagaatcaatattgtgaaaatgaccatactgccaaaagcaatctacaaattcaatgcaattcccatcaaaataccaccatcattcttcacagaactagaaaaaacaatcctaaaattcatatggaaccaaaaaagagcccgcatagccaaagcaagactaagcaaaaagaacaaatctggaggcatcacattacccgacttcaaactatactataaggccatagtcaccaaaacagcatggtactggtataaaaataggcacatagaccaatggaacagaatagagaacccagaaataaacccaaatacttacagccaactgatcttcgacaaagcaaacaaaaacataaagtggggaaaggacaccctattcaacaaatggtgctgggataattggcaagccacatgtaggagaatgaaactggatcctcatctctcaccttatacaaaaatcaactcaagatggatcaaggacttaaatctaagacctgaaaccataaaaattctagaagataacatcggaaaaacccttctagacattggcttaggcaaggacttcatgaccaagaacccaaaagcaaatgcaacaaaaacaaagataaatagntgggacttaattaaactaaagagcttctgcacggcaaaaggaacagtcagcagagtaaacagacaacccacagagtgggagaaaatcttcacaatctatacatctgacaaaggactaatatccagaatctacaangaactcaaacaaatcagcaagaaaaaaacaaacaatcccatcaaaaagtgggctaaggacatgaatagacaattctcaaaagaagatatacaaatggccaacaaacatatgaaaaaatgctcaacatca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 143 99.0 Weakly correlated
2 ZNF248 81 99.0 Weakly correlated
3 ZIM3 20 87.0 Weakly correlated
4 ZNF680 17 28.9 Weakly correlated
5 ZNF81 15 99.0 Weakly correlated
6 ZNF317 15 99.0 Weakly correlated
7 ZNF18 14 160.0 Weakly correlated
8 ZNF679 14 28.9 Weakly correlated
9 ZNF394 14 99.0 Weakly correlated
10 ZNF558 14 99.0 Weakly correlated
11 ZNF766 13 43.0 Weakly correlated
12 ZNF610 13 28.9 Weakly correlated
13 ZNF101 11 43.0 Weakly correlated
14 ZNF490 10 43.0 Weakly correlated
15 ZNF705B 10 28.9 Weakly correlated
16 ZNF2 10 99.0 Weakly correlated
17 ZNF92 10 28.9 Weakly correlated
18 ZFP37 9 99.0 Weakly correlated
19 ZNF705D 9 28.9 Weakly correlated
20 ZNF723 9 15.2 Weakly correlated
21 ZNF182 7 99.0 Weakly correlated
22 ZNF534 7 19.6 Weakly correlated
23 ZNF84 7 99.0 Weakly correlated
24 ZNF786 6 99.0 Weakly correlated
25 ZNF585B 6 99.0 Weakly correlated
26 ZNF263 6 180.0 Weakly correlated
27 ZNF251 6 94.0 Weakly correlated
28 ZNF250 6 99.0 Weakly correlated
29 ZNF793 6 99.0 Weakly correlated
30 ZFP69B 5 99.0 Weakly correlated
31 ZNF202 5 160.0 Weakly correlated
32 ZNF792 4 94.0 Weakly correlated
33 ZNF8 4 99.0 Weakly correlated
34 ZNF175 3 94.0 Weakly correlated
35 ZKSCAN1 3 160.0 Weakly correlated
36 ZNF597 3 94.0 Weakly correlated
37 ZNF133 3 99.0 Weakly correlated
38 ZNF547 3 74.0 Highly correlated
39 ZNF136 3 74.0 Highly correlated
40 ZNF441 3 43.0 Weakly correlated
41 ZNF140 3 99.0 Weakly correlated
42 ZNF28 3 28.9 Weakly correlated
43 ZFP28 2 99.0 Weakly correlated
44 ZNF701 2 28.9 Weakly correlated
45 ZNF749 2 28.9 Weakly correlated
46 ZNF778 2 74.0 Highly correlated
47 ZNF589 2 28.9 Weakly correlated
48 ZNF160 2 74.0 Highly correlated
49 ZNF584 2 99.0 Weakly correlated
50 ZNF568 2 99.0 Weakly correlated
51 ZNF169 2 94.0 Weakly correlated
52 ZNF554 2 99.0 Weakly correlated
53 ZFP57 2 87.0 Weakly correlated
54 ZNF879 2 99.0 Weakly correlated
55 ZNF486 2 8.6 Weakly correlated
56 ZNF485 2 94.0 Weakly correlated
57 ZNF479 2 6.4 Weakly correlated
58 ZNF197 2 99.0 Weakly correlated
59 ZNF471 2 94.0 Weakly correlated
60 ZNF707 1 74.0 Highly correlated
61 ZNF816 1 28.9 Weakly correlated
62 ZNF716 1 19.6 Weakly correlated
63 ZFP69 1 99.0 Weakly correlated
64 ZKSCAN8 1 160.0 Weakly correlated
65 ZNF726 1 28.9 Weakly correlated
66 ZNF282 1 319.0 Weakly correlated
67 ZNF274 1 99.0 Weakly correlated
68 ZNF257 1 0.0 Weakly correlated
69 ZNF878 1 43.0 Weakly correlated
70 ZNF211 1 94.0 Weakly correlated
71 ZNF845 1 28.9 Weakly correlated
72 ZNF157 1 99.0 Weakly correlated
73 ZNF440 1 28.9 Weakly correlated
74 ZNF141 1 43.0 Weakly correlated
75 ZNF354C 1 99.0 Weakly correlated
76 ZNF506 1 28.9 Weakly correlated
77 ZNF528 1 43.0 Weakly correlated
78 ZNF347 1 43.0 Weakly correlated
79 ZNF544 1 0.0 Weakly correlated
80 ZNF324 1 99.0 Weakly correlated
81 ZNF705E 1 0.0 Weakly correlated
82 ZNF605 1 99.0 Weakly correlated
83 ZNF10 1 99.0 Weakly correlated
84 ZNF641 1 99.0 Weakly correlated
85 ZNF677 1 99.0 Weakly correlated
86 ZKSCAN4 1 99.0 Weakly correlated
87 ZNF682 1 28.9 Weakly correlated
88 ZNF287 1 99.0 Weakly correlated
89 ZFP82 1 99.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF248 78 99.0 Weakly correlated
2 ZNF382 34 99.0 Weakly correlated
3 ZIM3 15 87.0 Weakly correlated
4 ZNF81 14 99.0 Weakly correlated
5 ZNF101 8 43.0 Weakly correlated
6 ZNF490 8 43.0 Weakly correlated
7 ZNF92 7 28.9 Weakly correlated
8 ZNF558 7 99.0 Weakly correlated
9 ZNF84 6 99.0 Weakly correlated
10 ZNF250 6 99.0 Weakly correlated
11 ZNF786 5 99.0 Weakly correlated
12 ZNF680 5 28.9 Weakly correlated
13 ZNF792 4 94.0 Weakly correlated
14 ZNF723 4 15.2 Weakly correlated
15 ZNF202 3 160.0 Weakly correlated
16 ZNF140 3 99.0 Weakly correlated
17 ZNF485 2 94.0 Weakly correlated
18 ZNF879 2 99.0 Weakly correlated
19 ZNF534 2 19.6 Weakly correlated
20 ZNF394 1 99.0 Weakly correlated
21 ZNF793 1 99.0 Weakly correlated
22 ZNF878 1 43.0 Weakly correlated
23 ZNF160 1 74.0 Highly correlated
24 ZNF705B 1 28.9 Weakly correlated
25 ZNF677 1 99.0 Weakly correlated
26 ZFP57 1 87.0 Weakly correlated
27 ZNF8 1 99.0 Weakly correlated
28 ZNF705D 1 28.9 Weakly correlated
29 ZNF324 1 99.0 Weakly correlated
30 ZNF701 1 28.9 Weakly correlated
31 ZNF2 1 99.0 Weakly correlated
32 ZFP69 1 99.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF248 99.0 Weakly correlated
2 ZNF250 99.0 Weakly correlated
3 ZNF382 99.0 Weakly correlated
4 ZNF490 43.0 Weakly correlated
5 ZNF84 99.0 Weakly correlated
6 ZNF92 28.9 Weakly correlated