ZRdb KZFP & Repeats
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LINE_L1PBB_5END

  • Name
    L1PBB_5END
  • Repbase
    L1PBB_5
  • Type
    LINE
  • Emergence
    74.0 Mya
  • Dfam Id
    DF0000353
Description :

Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
aatccggacggcaggccttgagtcccagatctttccgcttggtgggaagtttctttcagcagaggcacagttgcagtgctgggctcagcggggaaagtctgcagctctaccccaacagtcaggcagccctggtgctcgtgaagggtcttggagaagggactccttttccccctcgtccaccactgcagacacagctggggcttctcccacgggagctcggcgtgggtgcacctatagacagcctttctggaacacttcagggtgactgcatccccacaggaggagcgccctccaggttcaggcttgcacgagaggcagagtcacaattcctctctacttggaacatcaacattcctgcagatgaaaagaggtgcctgtctgatctgaatagccggaacactgggncaggagtgtgnctgggaggtggatngctttcctgctggcctggcaggggagctgaggtggctcccacccttccccctgataagacctcagcgcgtctcactgagagctcccccagccacctccgtcaaggctgggacctctgcccaccattgggtattgcatttacccacctgctttagccacaaccggtttctacccagggacacctcccctactggcctgaagcctgaaccgtcaacccagtaaataaaatactggggaaaaattaaataaataaataaanaaagtgcacaccacgggggaacgagataagcttcaagagacctctgccattccaaccccataggagacagtgaacttgctcacacaccgagcacatcgctactacaaccagcatctgagaaagccatcacacaaagactctctataaccaaggaactcatacagagtcttcacccctgaaagcaccaagagccgaattaggctacaataaactataaacattaaagtcacatccttaaggggaaaaaaaattaaaaaacacagtcgaatcaaaaataaattcaagaataattagaagaaatagtctacccaaatgagaaggaaccagaaaagtaattctggtaatatgacaaaacagggttctataacac
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 35 99.0 Weakly correlated
2 ZNF528 23 43.0 Weakly correlated
3 ZNF317 20 99.0 Weakly correlated
4 ZNF490 14 43.0 Weakly correlated
5 ZNF136 13 74.0 Highly correlated
6 ZNF679 12 28.9 Weakly correlated
7 ZNF263 11 180.0 Weakly correlated
8 ZNF793 11 99.0 Weakly correlated
9 ZNF735 10 28.9 Weakly correlated
10 ZNF160 9 74.0 Highly correlated
11 ZIM3 7 87.0 Weakly correlated
12 ZFP37 7 99.0 Weakly correlated
13 ZNF394 6 99.0 Weakly correlated
14 ZNF766 6 43.0 Weakly correlated
15 ZNF2 4 99.0 Weakly correlated
16 ZNF274 4 99.0 Weakly correlated
17 ZNF331 4 94.0 Weakly correlated
18 ZNF337 4 43.0 Weakly correlated
19 ZNF101 4 43.0 Weakly correlated
20 ZNF701 3 28.9 Weakly correlated
21 ZNF479 3 6.4 Weakly correlated
22 ZNF534 3 19.6 Weakly correlated
23 ZNF18 3 160.0 Weakly correlated
24 ZNF589 3 28.9 Weakly correlated
25 ZNF175 3 94.0 Weakly correlated
26 ZNF140 3 99.0 Weakly correlated
27 ZNF133 3 99.0 Weakly correlated
28 ZNF585A 3 99.0 Weakly correlated
29 ZNF680 2 28.9 Weakly correlated
30 ZNF705B 2 28.9 Weakly correlated
31 ZNF558 2 99.0 Weakly correlated
32 ZFP57 2 87.0 Weakly correlated
33 ZNF471 2 94.0 Weakly correlated
34 ZNF324 2 99.0 Weakly correlated
35 ZNF28 2 28.9 Weakly correlated
36 ZNF251 2 94.0 Weakly correlated
37 ZNF879 2 99.0 Weakly correlated
38 ZNF92 2 28.9 Weakly correlated
39 ZKSCAN1 2 160.0 Weakly correlated
40 ZNF705D 1 28.9 Weakly correlated
41 ZNF716 1 19.6 Weakly correlated
42 ZNF75D 1 94.0 Weakly correlated
43 ZNF786 1 99.0 Weakly correlated
44 ZNF674 1 99.0 Weakly correlated
45 ZNF610 1 28.9 Weakly correlated
46 ZNF93 1 8.6 Weakly correlated
47 ZNF584 1 99.0 Weakly correlated
48 ZNF483 1 99.0 Weakly correlated
49 ZNF114 1 28.9 Weakly correlated
50 ZNF182 1 99.0 Weakly correlated
51 ZNF248 1 99.0 Weakly correlated
52 ZNF257 1 0.0 Weakly correlated
53 ZNF273 1 28.9 Weakly correlated
54 ZNF287 1 99.0 Weakly correlated
55 ZNF30 1 94.0 Weakly correlated
56 ZNF334 1 99.0 Weakly correlated
57 ZNF33A 1 99.0 Weakly correlated
58 ZNF563 1 28.9 Weakly correlated
59 ZNF485 1 94.0 Weakly correlated
60 ZNF486 1 8.6 Weakly correlated
61 ZNF506 1 28.9 Weakly correlated
62 ZNF519 1 19.6 Weakly correlated
63 ZNF547 1 74.0 Highly correlated
64 ZNF549 1 87.0 Weakly correlated
65 ZNF554 1 99.0 Weakly correlated
66 ZNF560 1 43.0 Weakly correlated
67 ZNF561 1 43.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF490 14 43.0 Weakly correlated
2 ZNF136 12 74.0 Highly correlated
3 ZNF528 12 43.0 Weakly correlated
4 ZNF317 11 99.0 Weakly correlated
5 ZNF735 10 28.9 Weakly correlated
6 ZNF160 9 74.0 Highly correlated
7 ZNF382 6 99.0 Weakly correlated
8 ZIM3 5 87.0 Weakly correlated
9 ZNF101 4 43.0 Weakly correlated
10 ZNF337 4 43.0 Weakly correlated
11 ZNF479 3 6.4 Weakly correlated
12 ZNF793 3 99.0 Weakly correlated
13 ZNF263 3 180.0 Weakly correlated
14 ZNF133 2 99.0 Weakly correlated
15 ZNF2 2 99.0 Weakly correlated
16 ZNF140 2 99.0 Weakly correlated
17 ZNF679 2 28.9 Weakly correlated
18 ZNF766 2 43.0 Weakly correlated
19 ZNF331 2 94.0 Weakly correlated
20 ZNF534 1 19.6 Weakly correlated
21 ZNF18 1 160.0 Weakly correlated
22 ZNF75D 1 94.0 Weakly correlated
23 ZNF287 1 99.0 Weakly correlated
24 ZNF274 1 99.0 Weakly correlated
25 ZNF248 1 99.0 Weakly correlated
26 ZNF585A 1 99.0 Weakly correlated
27 ZNF716 1 19.6 Weakly correlated
28 ZNF680 1 28.9 Weakly correlated
29 ZNF549 1 87.0 Weakly correlated
30 ZNF471 1 94.0 Weakly correlated
31 ZNF394 1 99.0 Weakly correlated
32 ZNF879 1 99.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF490 43.0 Weakly correlated