ZRdb KZFP & Repeats
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LINE_L1PBA_5END

  • Name
    L1PBA_5END
  • Repbase
    L1PBA_5
  • Type
    LINE
  • Emergence
    74.0 Mya
  • Dfam Id
    DF0000352
Description :

5' end of LINE elements with L1PB1_3end subfamily 3' ends, comprisingthe 5'UTR and part of the ORF1 region.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
ggaaaatggcggataggaggcaggactaacntgcagctcccactcggacggacagaacagcgtgtggagactcacatcgtgaacttttgctccaagaaccaccgcaggaacataccaggaaaaccgaaagaattcacagaccctttgaaagaagcggcttgccgctgcaaactccgtgagacagccgaaaaactgtgagtncccaaagtgtgagagggggaaaggnnnanngtccgcctccgaacacacatcctcactggggaacctgaaaatccagatcacgggagaaggatttaaccttacctagagctgaaacgaatttagagagccgagcgaaatataaaagtagaagaagcagcgggaagagccctgtaggcactcccggtccccagctcgagcccagggaagccattcctgactttatctcacaggggtccttggggagggcngccagcggaattggggaagggccacagggngaaggaagcttccagctgaactttgtaataatttcgaccgagcgcgaattttcctgggcagaatccggggggcgaacgggaagtgctgcagatacgagcacagaagccgcagccgacggtgcgggcaggcggggaggggcgaggcctgaaagccctgcttgctttctcagcggggaggcttgtagcctggggcaagntctcagccctgctcaccggctgcctgganataaactcggtgctgttgggggggcacggcgggagtgagaccggccttgccggctgcgtgggagctgggtgaggcctgtcactgccggctttcccccacttccctggcgacctgtatgacgcagcagccgaggcagccataatccccctgggaacataactccattggcctgagaaccacacccccatcccccacagcggccgcagcaagccccgcccaaggagagtctgagctcagacacgcctaaccctgcccccacctgatggtctttctctacccgccctggtagccgaagacaaaagacataanctcttgggagctctatggccccgcccatcgcctgagaaacccgaatacttatccnggcgancttagggcaagcttgtatcccccctatactaccgcagctggtgctctcttgaaagcgccacctcctggctggaggccaaccaactcaagccattacagcaactcataacagaacaaccctgctccaaggaaggagaaaacaacagctaattccaccgcctgcaacatcctggctaaccagaggtcctgagtctgtccacgtgacaacttcactgctagcataaccagcatncgagaaaaccagcgcactaaacaaaaccacaaccaaggaccctcacagagtccacttcactcccctgccacctccaccggagcaggtgctggtatccacggctgagagacccgaagacggntcacatcacaggactctntgcagacancccccagtaccagcccggagcccggtagccccgctgggtggctagacccagaagagaaataacaatcactgcagttcggctctcaggaagccncatccctaggggaagggggagagcaccacatcaagggagcaccccgtgggacaaaagaatctgaacagcagcccttgagccccagatcttccctctgacatagtctacccaaatgagaaggaaccagaaaancaattctggtaatatgacaaaacaaggttctttaacacccccaaaagatcacactagctcaccagcaatggatccaaaccaagaagaaatccctgaattgccagaaaaagaattcagaaggtcgattattaagctaatcaaggaggcaccagagaaaggtgaagnccaacttaaagaaatcnaaaaaaatgatacaggatatgaanggaaaaatcttcagngaaatagatagcataaataaaaaacaanncgntcacaacttcnggaaacgaaggacacacttagagaaatgcaaaatgcnctggaaagtctcagcaatagaatcgaacaagtagaagaaagaacttcagagctcgaagacaaggctttcgaattaacccaatccgacaaagacaaagaaaaaagaatttnaaaaaaatgaacaaagcctccaagaagtctgggattatgttaaacgaccaaacctaagaataattggtgttcctgaggaagaagagaaatctaaaagtttggaaaacatatttgggggaataatcgaggaaaacttccccggccttgctagagacctagacatccaaatacaagaagctcaaagancgcgnnnnacacctgggaaattcatcgcaaaaagatcatcgcctaggcacatngtcatcaggttatctaaagtcaagatcgnnncgaaggaaagaatcttaagagctgtgaggcaaaagcaccaggtaacctataaaggaaaacctatcagattaacagcagatttctcagcagaaaccctacaagctagaagggattggggccctatcttcagcctccttaaacaaaacaattatcagccaagaattttgtatccagcgaaactaagcnttcataaatgaaggaaagatacagtctttttcagacaaacaaatgctgagagaattcgccactaccaagccagcactacaagaactgctaaaaggagctctaaatcttgaaacaaatcctcgaaacacaccaaaacagaacctccttaaagcataaatctcacaggacctataaaacaanaacacaatgaaaaaaaaaaaaacaacgncganncgnncgcgcgcgcgcgncgnncgnnnncgnncgnncgnncaaggtatncaggcaacaaatagcacgatgaatggaatagtacctcacatctcaatactaacgttgaatgtaaatggcctaaatgctccacttaaaagatacagaacggcagaatggataagaattcaccaaccaagtatctgctgccttcaggagactcacctaacacataa
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF528 432 43.0 Weakly correlated
2 ZNF382 293 99.0 Weakly correlated
3 ZNF317 235 99.0 Weakly correlated
4 ZNF490 190 43.0 Weakly correlated
5 ZNF160 170 74.0 Highly correlated
6 ZNF136 109 74.0 Highly correlated
7 ZNF263 94 180.0 Weakly correlated
8 ZNF735 84 28.9 Weakly correlated
9 ZNF679 62 28.9 Weakly correlated
10 ZIM3 54 87.0 Weakly correlated
11 ZNF429 54 28.9 Weakly correlated
12 ZNF793 52 99.0 Weakly correlated
13 ZNF766 47 43.0 Weakly correlated
14 ZNF2 44 99.0 Weakly correlated
15 ZNF680 40 28.9 Weakly correlated
16 ZNF534 36 19.6 Weakly correlated
17 ZNF479 34 6.4 Weakly correlated
18 ZNF394 33 99.0 Weakly correlated
19 ZNF248 32 99.0 Weakly correlated
20 ZNF554 32 99.0 Weakly correlated
21 ZNF471 31 94.0 Weakly correlated
22 ZFP37 27 99.0 Weakly correlated
23 ZNF558 24 99.0 Weakly correlated
24 ZNF589 22 28.9 Weakly correlated
25 ZNF274 19 99.0 Weakly correlated
26 ZNF133 18 99.0 Weakly correlated
27 ZNF18 18 160.0 Weakly correlated
28 ZFP69B 17 99.0 Weakly correlated
29 ZNF701 16 28.9 Weakly correlated
30 ZNF723 16 15.2 Weakly correlated
31 ZNF879 15 99.0 Weakly correlated
32 ZNF175 14 94.0 Weakly correlated
33 ZNF324 14 99.0 Weakly correlated
34 ZNF486 13 8.6 Weakly correlated
35 ZNF584 13 99.0 Weakly correlated
36 ZNF610 13 28.9 Weakly correlated
37 ZNF140 11 99.0 Weakly correlated
38 ZNF705B 11 28.9 Weakly correlated
39 ZNF92 11 28.9 Weakly correlated
40 ZNF197 10 99.0 Weakly correlated
41 ZNF257 10 0.0 Weakly correlated
42 ZNF485 10 94.0 Weakly correlated
43 ZFP57 8 87.0 Weakly correlated
44 ZKSCAN1 8 160.0 Weakly correlated
45 ZNF101 8 43.0 Weakly correlated
46 ZNF331 8 94.0 Weakly correlated
47 ZNF354A 7 99.0 Weakly correlated
48 ZKSCAN8 6 160.0 Weakly correlated
49 ZNF251 6 94.0 Weakly correlated
50 ZNF585A 6 99.0 Weakly correlated
51 ZNF705D 6 28.9 Weakly correlated
52 ZNF75D 6 94.0 Weakly correlated
53 ZNF337 5 43.0 Weakly correlated
54 ZNF506 5 28.9 Weakly correlated
55 ZNF597 5 94.0 Weakly correlated
56 ZNF778 5 74.0 Highly correlated
57 ZNF182 4 99.0 Weakly correlated
58 ZNF26 4 99.0 Weakly correlated
59 ZNF273 4 28.9 Weakly correlated
60 ZNF287 4 99.0 Weakly correlated
61 ZNF28 4 28.9 Weakly correlated
62 ZNF33A 4 99.0 Weakly correlated
63 ZNF483 4 99.0 Weakly correlated
64 ZNF549 4 87.0 Weakly correlated
65 ZNF674 4 99.0 Weakly correlated
66 ZNF786 4 99.0 Weakly correlated
67 ZNF12 3 99.0 Weakly correlated
68 ZNF320 3 28.9 Weakly correlated
69 ZNF433 3 43.0 Weakly correlated
70 ZNF468 3 28.9 Weakly correlated
71 ZNF707 3 74.0 Highly correlated
72 ZNF808 3 19.6 Weakly correlated
73 ZNF81 3 99.0 Weakly correlated
74 ZNF823 3 43.0 Weakly correlated
75 ZNF84 3 99.0 Weakly correlated
76 ZNF91 3 6.0 Weakly correlated
77 ZFP90 2 99.0 Weakly correlated
78 ZNF250 2 99.0 Weakly correlated
79 ZNF253 2 19.6 Weakly correlated
80 ZNF343 2 74.0 Highly correlated
81 ZNF350 2 99.0 Weakly correlated
82 ZNF41 2 99.0 Weakly correlated
83 ZNF441 2 43.0 Weakly correlated
84 ZNF445 2 99.0 Weakly correlated
85 ZNF454 2 99.0 Weakly correlated
86 ZNF519 2 19.6 Weakly correlated
87 ZNF547 2 74.0 Highly correlated
88 ZNF557 2 15.2 Weakly correlated
89 ZNF585B 2 99.0 Weakly correlated
90 ZNF611 2 19.6 Weakly correlated
91 ZNF671 2 94.0 Weakly correlated
92 ZNF677 2 99.0 Weakly correlated
93 ZNF682 2 28.9 Weakly correlated
94 ZNF695 2 28.9 Weakly correlated
95 ZNF816 2 28.9 Weakly correlated
96 ZFP30 1 99.0 Weakly correlated
97 ZFP69 1 99.0 Weakly correlated
98 ZNF114 1 28.9 Weakly correlated
99 ZNF135 1 94.0 Weakly correlated
100 ZNF141 1 43.0 Weakly correlated
101 ZNF169 1 94.0 Weakly correlated
102 ZNF17 1 69.0 Moderately correlated
103 ZNF180 1 99.0 Weakly correlated
104 ZNF222 1 43.0 Weakly correlated
105 ZNF225 1 74.0 Highly correlated
106 ZNF264 1 99.0 Weakly correlated
107 ZNF267 1 43.0 Weakly correlated
108 ZNF284 1 43.0 Weakly correlated
109 ZNF334 1 99.0 Weakly correlated
110 ZNF425 1 94.0 Weakly correlated
111 ZNF430 1 19.6 Weakly correlated
112 ZNF440 1 28.9 Weakly correlated
113 ZNF44 1 43.0 Weakly correlated
114 ZNF510 1 99.0 Weakly correlated
115 ZNF555 1 94.0 Weakly correlated
116 ZNF562 1 28.9 Weakly correlated
117 ZNF563 1 28.9 Weakly correlated
118 ZNF567 1 99.0 Weakly correlated
119 ZNF573 1 94.0 Weakly correlated
120 ZNF605 1 99.0 Weakly correlated
121 ZNF616 1 43.0 Weakly correlated
122 ZNF749 1 28.9 Weakly correlated
123 ZNF765 1 8.6 Weakly correlated
124 ZNF845 1 28.9 Weakly correlated
125 ZNF846 1 74.0 Highly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF490 182 43.0 Weakly correlated
2 ZNF160 167 74.0 Highly correlated
3 ZNF528 163 43.0 Weakly correlated
4 ZNF317 125 99.0 Weakly correlated
5 ZNF136 101 74.0 Highly correlated
6 ZNF735 79 28.9 Weakly correlated
7 ZNF382 50 99.0 Weakly correlated
8 ZNF263 39 180.0 Weakly correlated
9 ZIM3 33 87.0 Weakly correlated
10 ZNF248 32 99.0 Weakly correlated
11 ZNF471 26 94.0 Weakly correlated
12 ZNF680 23 28.9 Weakly correlated
13 ZNF133 18 99.0 Weakly correlated
14 ZNF793 17 99.0 Weakly correlated
15 ZNF534 17 19.6 Weakly correlated
16 ZNF879 14 99.0 Weakly correlated
17 ZNF723 13 15.2 Weakly correlated
18 ZNF554 12 99.0 Weakly correlated
19 ZNF2 10 99.0 Weakly correlated
20 ZNF479 10 6.4 Weakly correlated
21 ZNF679 9 28.9 Weakly correlated
22 ZNF558 8 99.0 Weakly correlated
23 ZNF257 7 0.0 Weakly correlated
24 ZNF485 6 94.0 Weakly correlated
25 ZNF766 6 43.0 Weakly correlated
26 ZNF337 6 43.0 Weakly correlated
27 ZNF75D 5 94.0 Weakly correlated
28 ZNF354A 5 99.0 Weakly correlated
29 ZNF506 4 28.9 Weakly correlated
30 ZNF674 4 99.0 Weakly correlated
31 ZNF429 4 28.9 Weakly correlated
32 ZFP57 3 87.0 Weakly correlated
33 ZNF585A 3 99.0 Weakly correlated
34 ZNF101 3 43.0 Weakly correlated
35 ZNF468 3 28.9 Weakly correlated
36 ZNF287 3 99.0 Weakly correlated
37 ZNF250 2 99.0 Weakly correlated
38 ZNF273 2 28.9 Weakly correlated
39 ZNF81 2 99.0 Weakly correlated
40 ZNF786 2 99.0 Weakly correlated
41 ZNF707 2 74.0 Highly correlated
42 ZNF671 2 94.0 Weakly correlated
43 ZNF610 2 28.9 Weakly correlated
44 ZNF597 2 94.0 Weakly correlated
45 ZNF197 2 99.0 Weakly correlated
46 ZNF433 2 43.0 Weakly correlated
47 ZNF28 2 28.9 Weakly correlated
48 ZNF18 2 160.0 Weakly correlated
49 ZFP69B 2 99.0 Weakly correlated
50 ZNF705D 2 28.9 Weakly correlated
51 ZFP90 2 99.0 Weakly correlated
52 ZNF705B 2 28.9 Weakly correlated
53 ZNF84 2 99.0 Weakly correlated
54 ZKSCAN1 2 160.0 Weakly correlated
55 ZNF677 2 99.0 Weakly correlated
56 ZFP37 1 99.0 Weakly correlated
57 ZNF44 1 43.0 Weakly correlated
58 ZNF589 1 28.9 Weakly correlated
59 ZNF350 1 99.0 Weakly correlated
60 ZNF425 1 94.0 Weakly correlated
61 ZNF41 1 99.0 Weakly correlated
62 ZNF573 1 94.0 Weakly correlated
63 ZNF584 1 99.0 Weakly correlated
64 ZNF701 1 28.9 Weakly correlated
65 ZNF816 1 28.9 Weakly correlated
66 ZNF182 1 99.0 Weakly correlated
67 ZNF440 1 28.9 Weakly correlated
68 ZNF823 1 43.0 Weakly correlated
69 ZNF225 1 74.0 Highly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF133 99.0 Weakly correlated
2 ZNF136 74.0 Highly correlated
3 ZNF248 99.0 Weakly correlated
4 ZNF257 0.0 Weakly correlated
5 ZNF263 180.0 Weakly correlated
6 ZNF2 99.0 Weakly correlated
7 ZNF317 99.0 Weakly correlated
8 ZNF337 43.0 Weakly correlated
9 ZNF471 94.0 Weakly correlated
10 ZNF490 43.0 Weakly correlated
11 ZNF528 43.0 Weakly correlated
12 ZNF534 19.6 Weakly correlated
13 ZNF554 99.0 Weakly correlated
14 ZNF680 28.9 Weakly correlated
15 ZNF793 99.0 Weakly correlated