ZRdb KZFP & Repeats
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LINE_L1PBA1_5END

  • Name
    L1PBA1_5END
  • Repbase
    L1PBA1_5
  • Type
    LINE
  • Emergence
    74.0 Mya
  • Dfam Id
    DF0000351
Description :

Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
ggggatcatggcggacgggaggcaggactagattgcagctccggacagagcagcgtgcggaggctcgcatcgtgaattttagctccagancgactgcaagaacaaaccagcaatcccgagaggacccacagaccctctgaaggaagcggactgctcctgcaggacccgggagacaccccaaatactgtgagtgccccaactgcggaagtgggaaagggagaccctcctctcccgaacacacacccccactggagaagctgaaggtctgtttgcgggagaagtttccgaccttacctggagctgagtcaatttagagagccgagcgaaatacaggggtagaggaagcagcagaaaggccctgggagctcgctgggtccccaagcaggccattcctgcctggcaccacagggatccntcgggagggcggccagaggagcagggggtaaaacnccacagggagaaggaaatctccagctgaactttgtaacaatttgaaccgggcgagaagcctcctggccagaactcgggggagggcgcgaatccggcgtgcagactccacaggcgggggaagaaccaaagcccttttctttcgcagctgggaggcgggtagcctggggcaagttctcaagcccgnctcgcccnccgcctggaaacagactcggggctgttggggggggcacggtgggagtgagaccggcccttcggtttgcgtgggagctgggtgaggcctgtgactgccggctttcccccacttccctgacaacctgcatgactcagcagaggcagccataatcctcctaggtacacaactccantgacctgggaacctcacccccatcccccacagcagccgcagcaagacccgcccaaggagagtctgagctcagacacgcctagccccgcccccacctgatggtccttccctacccaccctggtagcngaagacaaagggcatataatcttgggagttctagggccccgcccaccgccggttcctctccatactaccacagctgatgctctctggaaagcgccacctcctggcaggaggccaaccagcacaaaaatagagcattaaaccaccaaagctaagaaccctcacggagtccattncaccccccgccacctccaccggaacaggcgctggtatccacggctgagagacccatagacggttcacatcacaggactctgtgcagacaacccccagtaccagcccggagccgggtagactcgctgggtggctagacccagaagagagacaacaatcactgcagttcggctcacaggaagccacatccataggaaaagggggagagtactacatcaagggaacaccccgtgggacaaaagaatctgaacaacagccttcagccctagaccttccctctgacagagcctacccaaatgagaaggaaccagaaaaccaaccctggtaatatgacaaaacaaggctctttaacaccccccaaaaatcacactagctcaccagcaatggatccaaaccaagaagaaatccctgatttacctgaaaaagaattcaggaggttagttattaagctaatcagggaggcaccagagaaaggcgaag
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF429 95 28.9 Weakly correlated
2 ZNF317 54 99.0 Weakly correlated
3 ZNF793 42 99.0 Weakly correlated
4 ZNF382 37 99.0 Weakly correlated
5 ZNF490 36 43.0 Weakly correlated
6 ZNF528 29 43.0 Weakly correlated
7 ZNF766 20 43.0 Weakly correlated
8 ZNF534 19 19.6 Weakly correlated
9 ZNF136 18 74.0 Highly correlated
10 ZNF248 16 99.0 Weakly correlated
11 ZNF554 15 99.0 Weakly correlated
12 ZNF471 13 94.0 Weakly correlated
13 ZNF263 12 180.0 Weakly correlated
14 ZNF75D 12 94.0 Weakly correlated
15 ZNF879 10 99.0 Weakly correlated
16 ZIM3 10 87.0 Weakly correlated
17 ZNF160 10 74.0 Highly correlated
18 ZNF479 9 6.4 Weakly correlated
19 ZNF486 9 8.6 Weakly correlated
20 ZNF175 8 94.0 Weakly correlated
21 ZNF394 8 99.0 Weakly correlated
22 ZNF679 8 28.9 Weakly correlated
23 ZNF2 7 99.0 Weakly correlated
24 ZNF589 7 28.9 Weakly correlated
25 ZFP37 7 99.0 Weakly correlated
26 ZNF701 7 28.9 Weakly correlated
27 ZNF251 7 94.0 Weakly correlated
28 ZNF680 7 28.9 Weakly correlated
29 ZNF558 5 99.0 Weakly correlated
30 ZNF584 5 99.0 Weakly correlated
31 ZNF723 5 15.2 Weakly correlated
32 ZNF18 5 160.0 Weakly correlated
33 ZNF182 5 99.0 Weakly correlated
34 ZNF140 5 99.0 Weakly correlated
35 ZNF324 4 99.0 Weakly correlated
36 ZNF506 4 28.9 Weakly correlated
37 ZNF141 4 43.0 Weakly correlated
38 ZNF197 4 99.0 Weakly correlated
39 ZNF705B 3 28.9 Weakly correlated
40 ZKSCAN8 3 160.0 Weakly correlated
41 ZKSCAN1 3 160.0 Weakly correlated
42 ZNF91 3 6.0 Weakly correlated
43 ZNF257 3 0.0 Weakly correlated
44 ZFP69B 3 99.0 Weakly correlated
45 ZNF585A 3 99.0 Weakly correlated
46 ZNF320 3 28.9 Weakly correlated
47 ZNF735 3 28.9 Weakly correlated
48 ZNF610 3 28.9 Weakly correlated
49 ZNF510 2 99.0 Weakly correlated
50 ZFP57 2 87.0 Weakly correlated
51 ZNF597 2 94.0 Weakly correlated
52 ZFP90 2 99.0 Weakly correlated
53 ZNF671 2 94.0 Weakly correlated
54 ZNF786 2 99.0 Weakly correlated
55 ZNF28 2 28.9 Weakly correlated
56 ZNF705D 2 28.9 Weakly correlated
57 ZNF350 2 99.0 Weakly correlated
58 PRDM9 1 0.0 Weakly correlated
59 ZNF92 1 28.9 Weakly correlated
60 ZNF75A 1 94.0 Weakly correlated
61 ZNF675 1 8.6 Weakly correlated
62 ZNF84 1 99.0 Weakly correlated
63 ZNF93 1 8.6 Weakly correlated
64 ZNF354A 1 99.0 Weakly correlated
65 ZNF101 1 43.0 Weakly correlated
66 ZNF12 1 99.0 Weakly correlated
67 ZNF157 1 99.0 Weakly correlated
68 ZNF267 1 43.0 Weakly correlated
69 ZNF274 1 99.0 Weakly correlated
70 ZNF284 1 43.0 Weakly correlated
71 ZNF287 1 99.0 Weakly correlated
72 ZNF334 1 99.0 Weakly correlated
73 ZNF33A 1 99.0 Weakly correlated
74 ZNF674 1 99.0 Weakly correlated
75 ZNF440 1 28.9 Weakly correlated
76 ZNF441 1 43.0 Weakly correlated
77 ZNF44 1 43.0 Weakly correlated
78 ZNF483 1 99.0 Weakly correlated
79 ZNF485 1 94.0 Weakly correlated
80 ZNF519 1 19.6 Weakly correlated
81 ZNF547 1 74.0 Highly correlated
82 ZNF573 1 94.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF490 37 43.0 Weakly correlated
2 ZNF317 29 99.0 Weakly correlated
3 ZNF429 18 28.9 Weakly correlated
4 ZNF248 16 99.0 Weakly correlated
5 ZNF136 16 74.0 Highly correlated
6 ZNF471 12 94.0 Weakly correlated
7 ZNF534 12 19.6 Weakly correlated
8 ZNF879 10 99.0 Weakly correlated
9 ZNF528 9 43.0 Weakly correlated
10 ZNF554 9 99.0 Weakly correlated
11 ZNF160 9 74.0 Highly correlated
12 ZIM3 8 87.0 Weakly correlated
13 ZNF75D 7 94.0 Weakly correlated
14 ZNF382 7 99.0 Weakly correlated
15 ZNF723 5 15.2 Weakly correlated
16 ZNF263 4 180.0 Weakly correlated
17 ZNF735 3 28.9 Weakly correlated
18 ZNF2 3 99.0 Weakly correlated
19 ZNF766 3 43.0 Weakly correlated
20 ZFP90 3 99.0 Weakly correlated
21 ZNF701 2 28.9 Weakly correlated
22 ZFP57 2 87.0 Weakly correlated
23 ZNF680 2 28.9 Weakly correlated
24 ZNF597 2 94.0 Weakly correlated
25 ZNF585A 2 99.0 Weakly correlated
26 ZNF175 2 94.0 Weakly correlated
27 ZNF793 2 99.0 Weakly correlated
28 ZNF28 2 28.9 Weakly correlated
29 ZNF479 2 6.4 Weakly correlated
30 ZNF589 2 28.9 Weakly correlated
31 ZNF506 2 28.9 Weakly correlated
32 ZNF18 2 160.0 Weakly correlated
33 ZNF84 1 99.0 Weakly correlated
34 ZFP37 1 99.0 Weakly correlated
35 ZKSCAN1 1 160.0 Weakly correlated
36 ZNF394 1 99.0 Weakly correlated
37 ZNF101 1 43.0 Weakly correlated
38 ZNF140 1 99.0 Weakly correlated
39 ZNF141 1 43.0 Weakly correlated
40 ZNF251 1 94.0 Weakly correlated
41 ZNF584 1 99.0 Weakly correlated
42 ZNF257 1 0.0 Weakly correlated
43 ZNF44 1 43.0 Weakly correlated
44 ZNF324 1 99.0 Weakly correlated
45 ZNF440 1 28.9 Weakly correlated
46 ZNF558 1 99.0 Weakly correlated
47 ZNF75A 1 94.0 Weakly correlated
48 ZNF267 1 43.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF471 94.0 Weakly correlated
2 ZNF554 99.0 Weakly correlated
3 ZNF75D 94.0 Weakly correlated