ZRdb KZFP & Repeats
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LINE_L1PB4_3END

  • Name
    L1PB4_3END
  • Repbase
    L1PB4
  • Type
    LINE
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0000350
Description :

ORF2 ends at bp ~684
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
ctaatatccagaatctacaaggaactcaaacaactcaacaagaaaaaaacaaataaccccattaaaaagtgggcaaaggacatgaacagacatttttcaaaagaagacatacaagcggccaacaaacatatgaaaaaatgctcaacatcactaatcatcagagaaatgcaaattaaaaccacaatgagataccatcttacaccagtcagaatggctattattaaaaagtcaaaaaacaacagatgttggcgaggatgcggagaaaagggaacgcttatacactgttggtgggaatgtaaattagtacaacctctatggaaaacagtatggagatttctcaaagaactaaaaatagaactaccattcgatccagcaatcccactactgggtatctacccaaaggaaaagaaatcattatatcaaaaagatacctgcactcgtatgtttatcgcagcactattcacaatagcaaagatatggaatcaacctaagtgtccatcaacggatgactggataaagaaaatgtggtatatatacaccatggaatactactcagccataaaaaagaatgaaatcatgtcttttgcagcaacatggatggaactggaggccattatcctaagtgaaataactcagaaacagaaagtcaaataccgcatgttctcacttataagtgggagctaaacaatgngtacacatggacatagagagtggaataatagacactggagactccgaaaggtgggagggtgggaggggggtgagggatgagaaattacctantgggtacaatgtacactattcgggtgatggntacactaaaagcccagacttcaccactacgcaatatatccatgtaacaaaactgcacttgtaccccctaaatctataaaaataaaaaaa
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 335 99.0 Highly correlated
2 ZNF486 100 8.6 Weakly correlated
3 ZIM3 95 87.0 Moderately correlated
4 ZNF92 95 28.9 Weakly correlated
5 ZNF84 83 99.0 Highly correlated
6 ZNF317 81 99.0 Highly correlated
7 ZNF160 78 74.0 Weakly correlated
8 ZNF2 60 99.0 Highly correlated
9 ZNF680 55 28.9 Weakly correlated
10 ZNF263 52 180.0 Weakly correlated
11 ZNF490 49 43.0 Weakly correlated
12 ZNF679 49 28.9 Weakly correlated
13 ZNF766 48 43.0 Weakly correlated
14 ZNF723 46 15.2 Weakly correlated
15 ZNF394 41 99.0 Highly correlated
16 ZFP37 38 99.0 Highly correlated
17 ZNF705B 35 28.9 Weakly correlated
18 ZNF8 35 99.0 Highly correlated
19 ZNF133 31 99.0 Highly correlated
20 ZNF337 30 43.0 Weakly correlated
21 ZNF705D 30 28.9 Weakly correlated
22 ZNF793 29 99.0 Highly correlated
23 ZNF251 28 94.0 Moderately correlated
24 ZNF136 27 74.0 Weakly correlated
25 ZNF248 27 99.0 Highly correlated
26 ZKSCAN1 22 160.0 Weakly correlated
27 ZNF558 21 99.0 Highly correlated
28 ZNF101 19 43.0 Weakly correlated
29 ZNF479 19 6.4 Weakly correlated
30 ZNF18 17 160.0 Weakly correlated
31 ZNF429 16 28.9 Weakly correlated
32 ZNF528 16 43.0 Weakly correlated
33 ZNF534 16 19.6 Weakly correlated
34 ZNF610 16 28.9 Weakly correlated
35 ZNF324 14 99.0 Highly correlated
36 ZNF471 14 94.0 Moderately correlated
37 ZNF589 14 28.9 Weakly correlated
38 ZNF175 13 94.0 Moderately correlated
39 ZNF182 13 99.0 Highly correlated
40 ZNF485 13 94.0 Moderately correlated
41 ZFP28 10 99.0 Highly correlated
42 ZNF274 10 99.0 Highly correlated
43 ZNF28 10 28.9 Weakly correlated
44 ZNF701 10 28.9 Weakly correlated
45 ZNF735 10 28.9 Weakly correlated
46 ZFP69B 9 99.0 Highly correlated
47 ZNF197 9 99.0 Highly correlated
48 ZNF222 9 43.0 Weakly correlated
49 ZNF583 9 99.0 Highly correlated
50 ZNF584 9 99.0 Highly correlated
51 ZNF257 8 0.0 Weakly correlated
52 ZFP57 7 87.0 Moderately correlated
53 ZNF230 7 28.9 Weakly correlated
54 ZNF506 7 28.9 Weakly correlated
55 ZNF554 6 99.0 Highly correlated
56 ZNF823 6 43.0 Weakly correlated
57 ZNF879 6 99.0 Highly correlated
58 ZKSCAN8 5 160.0 Weakly correlated
59 ZNF114 5 28.9 Weakly correlated
60 ZNF202 5 160.0 Weakly correlated
61 ZNF441 5 43.0 Weakly correlated
62 ZNF597 5 94.0 Moderately correlated
63 ZNF140 4 99.0 Highly correlated
64 ZNF468 4 28.9 Weakly correlated
65 ZNF519 4 19.6 Weakly correlated
66 ZNF75D 4 94.0 Moderately correlated
67 ZNF778 4 74.0 Weakly correlated
68 ZNF100 3 28.9 Weakly correlated
69 ZNF135 3 94.0 Moderately correlated
70 ZNF320 3 28.9 Weakly correlated
71 ZNF331 3 94.0 Moderately correlated
72 ZNF334 3 99.0 Highly correlated
73 ZNF440 3 28.9 Weakly correlated
74 ZNF585A 3 99.0 Highly correlated
75 ZNF641 3 99.0 Highly correlated
76 ZNF792 3 94.0 Moderately correlated
77 ZNF141 2 43.0 Weakly correlated
78 ZNF17 2 69.0 Weakly correlated
79 ZNF223 2 43.0 Weakly correlated
80 ZNF224 2 69.0 Weakly correlated
81 ZNF253 2 19.6 Weakly correlated
82 ZNF26 2 99.0 Highly correlated
83 ZNF282 2 319.0 Weakly correlated
84 ZNF354C 2 99.0 Highly correlated
85 ZNF418 2 43.0 Weakly correlated
86 ZNF483 2 99.0 Highly correlated
87 ZNF549 2 87.0 Moderately correlated
88 ZNF567 2 99.0 Highly correlated
89 ZNF585B 2 99.0 Highly correlated
90 ZNF586 2 43.0 Weakly correlated
91 ZNF671 2 94.0 Moderately correlated
92 ZNF765 2 8.6 Weakly correlated
93 ZNF780B 2 74.0 Weakly correlated
94 ZNF786 2 99.0 Highly correlated
95 ZFP30 1 99.0 Highly correlated
96 ZFP82 1 99.0 Highly correlated
97 ZKSCAN2 1 180.0 Weakly correlated
98 ZKSCAN5 1 160.0 Weakly correlated
99 ZNF10 1 99.0 Highly correlated
100 ZNF225 1 74.0 Weakly correlated
101 ZNF250 1 99.0 Highly correlated
102 ZNF264 1 99.0 Highly correlated
103 ZNF267 1 43.0 Weakly correlated
104 ZNF273 1 28.9 Weakly correlated
105 ZNF284 1 43.0 Weakly correlated
106 ZNF287 1 99.0 Highly correlated
107 ZNF304 1 99.0 Highly correlated
108 ZNF33A 1 99.0 Highly correlated
109 ZNF343 1 74.0 Weakly correlated
110 ZNF354A 1 99.0 Highly correlated
111 ZNF425 1 94.0 Moderately correlated
112 ZNF433 1 43.0 Weakly correlated
113 ZNF436 1 180.0 Weakly correlated
114 ZNF44 1 43.0 Weakly correlated
115 ZNF547 1 74.0 Weakly correlated
116 ZNF565 1 99.0 Highly correlated
117 ZNF587 1 28.9 Weakly correlated
118 ZNF605 1 99.0 Highly correlated
119 ZNF620 1 99.0 Highly correlated
120 ZNF626 1 0.0 Weakly correlated
121 ZNF649 1 28.9 Weakly correlated
122 ZNF658 1 99.0 Highly correlated
123 ZNF674 1 99.0 Highly correlated
124 ZNF677 1 99.0 Highly correlated
125 ZNF695 1 28.9 Weakly correlated
126 ZNF700 1 28.9 Weakly correlated
127 ZNF707 1 74.0 Weakly correlated
128 ZNF730 1 19.6 Weakly correlated
129 ZNF77 1 87.0 Moderately correlated
130 ZNF789 1 99.0 Highly correlated
131 ZNF808 1 19.6 Weakly correlated
132 ZNF816 1 28.9 Weakly correlated
133 ZNF81 1 99.0 Highly correlated
134 ZNF91 1 6.0 Weakly correlated
135 ZNF93 1 8.6 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF84 82 99.0 Highly correlated
2 ZNF160 68 74.0 Weakly correlated
3 ZNF382 65 99.0 Highly correlated
4 ZNF486 63 8.6 Weakly correlated
5 ZIM3 58 87.0 Moderately correlated
6 ZNF92 57 28.9 Weakly correlated
7 ZNF490 42 43.0 Weakly correlated
8 ZNF723 31 15.2 Weakly correlated
9 ZNF337 29 43.0 Weakly correlated
10 ZNF8 29 99.0 Highly correlated
11 ZNF248 23 99.0 Highly correlated
12 ZNF317 22 99.0 Highly correlated
13 ZNF136 21 74.0 Weakly correlated
14 ZNF133 18 99.0 Highly correlated
15 ZNF263 15 180.0 Weakly correlated
16 ZNF680 13 28.9 Weakly correlated
17 ZNF251 11 94.0 Moderately correlated
18 ZNF2 11 99.0 Highly correlated
19 ZNF479 11 6.4 Weakly correlated
20 ZNF735 10 28.9 Weakly correlated
21 ZNF793 9 99.0 Highly correlated
22 ZNF471 8 94.0 Moderately correlated
23 ZNF485 8 94.0 Moderately correlated
24 ZNF101 8 43.0 Weakly correlated
25 ZNF324 6 99.0 Highly correlated
26 ZNF679 6 28.9 Weakly correlated
27 ZNF766 6 43.0 Weakly correlated
28 ZNF534 6 19.6 Weakly correlated
29 ZNF879 4 99.0 Highly correlated
30 ZFP57 4 87.0 Moderately correlated
31 ZNF823 4 43.0 Weakly correlated
32 ZNF705D 4 28.9 Weakly correlated
33 ZFP28 4 99.0 Highly correlated
34 ZNF528 4 43.0 Weakly correlated
35 ZNF506 4 28.9 Weakly correlated
36 ZNF429 3 28.9 Weakly correlated
37 ZNF558 3 99.0 Highly correlated
38 ZNF468 3 28.9 Weakly correlated
39 ZNF705B 3 28.9 Weakly correlated
40 ZNF75D 3 94.0 Moderately correlated
41 ZNF18 3 160.0 Weakly correlated
42 ZNF641 2 99.0 Highly correlated
43 ZNF320 2 28.9 Weakly correlated
44 ZKSCAN8 2 160.0 Weakly correlated
45 ZNF780B 2 74.0 Weakly correlated
46 ZNF585A 2 99.0 Highly correlated
47 ZNF597 2 94.0 Moderately correlated
48 ZNF567 1 99.0 Highly correlated
49 ZNF282 1 319.0 Weakly correlated
50 ZNF677 1 99.0 Highly correlated
51 ZNF250 1 99.0 Highly correlated
52 ZNF626 1 0.0 Weakly correlated
53 ZNF585B 1 99.0 Highly correlated
54 ZNF695 1 28.9 Weakly correlated
55 ZNF792 1 94.0 Moderately correlated
56 ZNF274 1 99.0 Highly correlated
57 ZNF28 1 28.9 Weakly correlated
58 ZNF789 1 99.0 Highly correlated
59 ZNF81 1 99.0 Highly correlated
60 ZNF394 1 99.0 Highly correlated
61 ZFP37 1 99.0 Highly correlated
62 ZFP69B 1 99.0 Highly correlated
63 ZFP82 1 99.0 Highly correlated
64 ZKSCAN1 1 160.0 Weakly correlated
65 ZNF100 1 28.9 Weakly correlated
66 ZNF10 1 99.0 Highly correlated
67 ZNF114 1 28.9 Weakly correlated
68 ZNF140 1 99.0 Highly correlated
69 ZNF141 1 43.0 Weakly correlated
70 ZNF202 1 160.0 Weakly correlated
71 ZNF765 1 8.6 Weakly correlated
72 ZNF483 1 99.0 Highly correlated
73 ZNF440 1 28.9 Weakly correlated
74 ZNF44 1 43.0 Weakly correlated
75 ZNF584 1 99.0 Highly correlated
76 ZNF778 1 74.0 Weakly correlated
77 ZNF257 1 0.0 Weakly correlated
78 ZNF287 1 99.0 Highly correlated
79 ZNF549 1 87.0 Moderately correlated
80 ZNF197 1 99.0 Highly correlated
81 ZNF273 1 28.9 Weakly correlated
82 ZNF33A 1 99.0 Highly correlated
83 ZNF433 1 43.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF251 94.0 Moderately correlated
2 ZNF263 180.0 Weakly correlated
3 ZNF2 99.0 Highly correlated
4 ZNF317 99.0 Highly correlated
5 ZNF486 8.6 Weakly correlated
6 ZNF680 28.9 Weakly correlated
7 ZNF84 99.0 Highly correlated
8 ZNF8 99.0 Highly correlated
9 ZNF92 28.9 Weakly correlated