ZRdb KZFP & Repeats
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LINE_L1PB3_3END

  • Name
    L1PB3_3END
  • Repbase
    L1PB3
  • Type
    LINE
  • Emergence
    74.0 Mya
  • Dfam Id
    DF0000349
Description :

ORF2 ends at bp ~684
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
ctaatatccagaatctacaaggaactcaaacaaatcagcaagaaaaaaacaaataatcccatcaaaaagtgggcaaatgacatgaatagacatttctcaaaagaagatatacaaatggccaacaaacatatgaaaaaatgctcaacatcactaatcatcagggaaatgcaaattaaaaccacaatgagataccaccttaccccagccagaatggccattattaaaaagtcaaaaaacaatagatgttggcgtggatgtggtgaaaagggaacgcttatacactgctggtgggaatgtaaattagtacaacctctatggaaaacagtatggagatttctcaaagaactaaaagtagatctaccattcgatccagcaatcccactactgggtatctacccaaaggaaaagaagtcattatatcaaaaagacacctgcacgcgtatgtttatcgcagcacaattcacaattgcaaagatatggaaccaacctaagtgcccatcaaccgatgagtggataaagaaaatgtggtatatatacaccatggaatactactcagccataaaaaagaacgaaataatgtcttttgcagcaacttggatggagctggaggccattattctaagtgaagtaactcaggaatggaaaaccaaataccgtatgttctcacttataagtgggagctaagctatgggtacgcaaaggcatacagagtggtataatggacnttggagactcagaagnggggagggtgggaggggggtgagggataaaaaactacatattgggtacaatgtacactactcgggtgacgggtgcactaaaatctcagacttcaccactatacaattcatccatgtaaccaaaaaccacttgtaccccnaaagctattgaaataaaaaaa
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 361 99.0 Weakly correlated
2 ZNF317 69 99.0 Weakly correlated
3 ZNF248 67 99.0 Weakly correlated
4 ZNF528 67 43.0 Weakly correlated
5 ZNF490 59 43.0 Weakly correlated
6 ZNF136 48 74.0 Highly correlated
7 ZNF486 41 8.6 Weakly correlated
8 ZNF680 41 28.9 Weakly correlated
9 ZNF263 38 180.0 Weakly correlated
10 ZNF705B 37 28.9 Weakly correlated
11 ZIM3 36 87.0 Weakly correlated
12 ZNF679 32 28.9 Weakly correlated
13 ZNF92 32 28.9 Weakly correlated
14 ZNF705D 31 28.9 Weakly correlated
15 ZNF394 29 99.0 Weakly correlated
16 ZNF766 29 43.0 Weakly correlated
17 ZNF84 27 99.0 Weakly correlated
18 ZNF735 25 28.9 Weakly correlated
19 ZNF160 24 74.0 Highly correlated
20 ZNF8 23 99.0 Weakly correlated
21 ZNF337 20 43.0 Weakly correlated
22 ZNF793 20 99.0 Weakly correlated
23 ZFP37 19 99.0 Weakly correlated
24 ZNF471 19 94.0 Weakly correlated
25 ZNF2 17 99.0 Weakly correlated
26 ZNF558 17 99.0 Weakly correlated
27 ZNF723 17 15.2 Weakly correlated
28 ZNF324 16 99.0 Weakly correlated
29 ZNF133 12 99.0 Weakly correlated
30 ZNF101 11 43.0 Weakly correlated
31 ZNF274 11 99.0 Weakly correlated
32 ZKSCAN1 9 160.0 Weakly correlated
33 ZNF182 9 99.0 Weakly correlated
34 ZFP69B 8 99.0 Weakly correlated
35 ZNF257 8 0.0 Weakly correlated
36 ZNF479 8 6.4 Weakly correlated
37 ZNF610 8 28.9 Weakly correlated
38 ZNF140 7 99.0 Weakly correlated
39 ZNF18 7 160.0 Weakly correlated
40 ZNF251 7 94.0 Weakly correlated
41 ZNF41 7 99.0 Weakly correlated
42 ZNF485 7 94.0 Weakly correlated
43 ZNF554 7 99.0 Weakly correlated
44 ZNF701 7 28.9 Weakly correlated
45 ZNF879 7 99.0 Weakly correlated
46 ZFP28 6 99.0 Weakly correlated
47 ZNF331 6 94.0 Weakly correlated
48 ZNF33A 6 99.0 Weakly correlated
49 ZNF549 6 87.0 Weakly correlated
50 ZNF175 5 94.0 Weakly correlated
51 ZNF211 5 94.0 Weakly correlated
52 ZNF792 5 94.0 Weakly correlated
53 ZNF197 4 99.0 Weakly correlated
54 ZNF202 4 160.0 Weakly correlated
55 ZNF43 4 43.0 Weakly correlated
56 ZNF547 4 74.0 Highly correlated
57 ZFP57 3 87.0 Weakly correlated
58 ZNF483 3 99.0 Weakly correlated
59 ZNF519 3 19.6 Weakly correlated
60 ZNF534 3 19.6 Weakly correlated
61 ZNF567 3 99.0 Weakly correlated
62 ZNF597 3 94.0 Weakly correlated
63 ZNF677 3 99.0 Weakly correlated
64 ZNF682 3 28.9 Weakly correlated
65 ZNF695 3 28.9 Weakly correlated
66 ZNF75D 3 94.0 Weakly correlated
67 ZNF786 3 99.0 Weakly correlated
68 ZNF81 3 99.0 Weakly correlated
69 ZFP90 2 99.0 Weakly correlated
70 ZNF135 2 94.0 Weakly correlated
71 ZNF225 2 74.0 Highly correlated
72 ZNF250 2 99.0 Weakly correlated
73 ZNF287 2 99.0 Weakly correlated
74 ZNF28 2 28.9 Weakly correlated
75 ZNF334 2 99.0 Weakly correlated
76 ZNF425 2 94.0 Weakly correlated
77 ZNF584 2 99.0 Weakly correlated
78 ZNF585A 2 99.0 Weakly correlated
79 ZNF589 2 28.9 Weakly correlated
80 ZNF605 2 99.0 Weakly correlated
81 ZNF674 2 99.0 Weakly correlated
82 ZNF707 2 74.0 Highly correlated
83 ZNF823 2 43.0 Weakly correlated
84 ZFP30 1 99.0 Weakly correlated
85 ZKSCAN8 1 160.0 Weakly correlated
86 ZNF124 1 43.0 Weakly correlated
87 ZNF141 1 43.0 Weakly correlated
88 ZNF264 1 99.0 Weakly correlated
89 ZNF26 1 99.0 Weakly correlated
90 ZNF284 1 43.0 Weakly correlated
91 ZNF320 1 28.9 Weakly correlated
92 ZNF347 1 43.0 Weakly correlated
93 ZNF350 1 99.0 Weakly correlated
94 ZNF418 1 43.0 Weakly correlated
95 ZNF429 1 28.9 Weakly correlated
96 ZNF440 1 28.9 Weakly correlated
97 ZNF441 1 43.0 Weakly correlated
98 ZNF442 1 43.0 Weakly correlated
99 ZNF461 1 99.0 Weakly correlated
100 ZNF468 1 28.9 Weakly correlated
101 ZNF561 1 43.0 Weakly correlated
102 ZNF563 1 28.9 Weakly correlated
103 ZNF578 1 15.2 Weakly correlated
104 ZNF57 1 28.9 Weakly correlated
105 ZNF582 1 99.0 Weakly correlated
106 ZNF583 1 99.0 Weakly correlated
107 ZNF611 1 19.6 Weakly correlated
108 ZNF630 1 94.0 Weakly correlated
109 ZNF641 1 99.0 Weakly correlated
110 ZNF649 1 28.9 Weakly correlated
111 ZNF705G 1 28.9 Weakly correlated
112 ZNF736 1 43.0 Weakly correlated
113 ZNF75A 1 94.0 Weakly correlated
114 ZNF808 1 19.6 Weakly correlated
115 ZNF813 1 28.9 Weakly correlated
116 ZNF850 1 28.9 Weakly correlated
117 ZNF878 1 43.0 Weakly correlated
118 ZNF91 1 6.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 74 99.0 Weakly correlated
2 ZNF248 65 99.0 Weakly correlated
3 ZNF490 56 43.0 Weakly correlated
4 ZNF136 42 74.0 Highly correlated
5 ZNF486 31 8.6 Weakly correlated
6 ZNF528 28 43.0 Weakly correlated
7 ZNF84 27 99.0 Weakly correlated
8 ZNF317 27 99.0 Weakly correlated
9 ZIM3 24 87.0 Weakly correlated
10 ZNF735 22 28.9 Weakly correlated
11 ZNF160 20 74.0 Highly correlated
12 ZNF337 20 43.0 Weakly correlated
13 ZNF92 19 28.9 Weakly correlated
14 ZNF471 17 94.0 Weakly correlated
15 ZNF8 17 99.0 Weakly correlated
16 ZNF793 10 99.0 Weakly correlated
17 ZNF723 10 15.2 Weakly correlated
18 ZNF133 9 99.0 Weakly correlated
19 ZNF680 8 28.9 Weakly correlated
20 ZNF263 8 180.0 Weakly correlated
21 ZNF558 8 99.0 Weakly correlated
22 ZNF879 7 99.0 Weakly correlated
23 ZNF705D 6 28.9 Weakly correlated
24 ZNF479 6 6.4 Weakly correlated
25 ZNF101 6 43.0 Weakly correlated
26 ZNF324 4 99.0 Weakly correlated
27 ZNF331 4 94.0 Weakly correlated
28 ZNF705B 4 28.9 Weakly correlated
29 ZNF766 4 43.0 Weakly correlated
30 ZNF485 4 94.0 Weakly correlated
31 ZNF677 3 99.0 Weakly correlated
32 ZNF140 3 99.0 Weakly correlated
33 ZKSCAN1 3 160.0 Weakly correlated
34 ZFP28 3 99.0 Weakly correlated
35 ZNF211 3 94.0 Weakly correlated
36 ZNF394 3 99.0 Weakly correlated
37 ZFP57 3 87.0 Weakly correlated
38 ZNF567 2 99.0 Weakly correlated
39 ZNF695 2 28.9 Weakly correlated
40 ZNF257 2 0.0 Weakly correlated
41 ZNF18 2 160.0 Weakly correlated
42 ZNF554 2 99.0 Weakly correlated
43 ZNF251 2 94.0 Weakly correlated
44 ZNF250 2 99.0 Weakly correlated
45 ZNF707 2 74.0 Highly correlated
46 ZNF81 2 99.0 Weakly correlated
47 ZNF549 2 87.0 Weakly correlated
48 ZNF679 2 28.9 Weakly correlated
49 ZNF585A 2 99.0 Weakly correlated
50 ZFP90 2 99.0 Weakly correlated
51 ZNF534 2 19.6 Weakly correlated
52 ZNF792 1 94.0 Weakly correlated
53 ZNF225 1 74.0 Highly correlated
54 ZFP37 1 99.0 Weakly correlated
55 ZNF141 1 43.0 Weakly correlated
56 ZFP69B 1 99.0 Weakly correlated
57 ZNF2 1 99.0 Weakly correlated
58 ZNF264 1 99.0 Weakly correlated
59 ZNF287 1 99.0 Weakly correlated
60 ZNF786 1 99.0 Weakly correlated
61 ZNF75D 1 94.0 Weakly correlated
62 ZNF41 1 99.0 Weakly correlated
63 ZNF202 1 160.0 Weakly correlated
64 ZNF674 1 99.0 Weakly correlated
65 ZNF563 1 28.9 Weakly correlated
66 ZNF43 1 43.0 Weakly correlated
67 ZNF605 1 99.0 Weakly correlated
68 ZNF823 1 43.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF471 94.0 Weakly correlated
2 ZNF486 8.6 Weakly correlated
3 ZNF680 28.9 Weakly correlated
4 ZNF84 99.0 Weakly correlated
5 ZNF92 28.9 Weakly correlated