ZRdb KZFP & Repeats
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LINE_L1PB2_3END

  • Name
    L1PB2_3END
  • Repbase
    L1PB2
  • Type
    LINE
  • Emergence
    74.0 Mya
  • Dfam Id
    DF0000348
Description :

ORF2 ends at bp ~684
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
ctaatatccagaatctacaaggaactcaaacaaatcagcaagaaaaaaacaaataatcccatcaaaaagtgggcaaaggacatgaatagacaattctcaaaagaagatatacaaacggccaacaaacatatgaaaaaatgctcaacatcactaattatcagggaaatgcaaattaaaaccacaatgagataccaccttactcctgcaagaatggccataattaaaaagtcaaaaaacaatagatgttggcgtggatgtggtgaaaagggaacacttttacactgctggtgggaatgtaaactagtacaaccactatggaaaacagtatggagattccttaaagaactaaaagtagaactaccattcgatccagcaatcccactactgggtatctacccaaaggaaaagaagtcattatatgaaaaagacacatgcacacgcatgtttatagcagcacaattcgcaattgcaaagatatggaaccaacctaagtgcccatcaaccaacgagtggataaagaaaatgtggtatatatacaccatggaatactactcagccataaaaaggaacgaaataatgtcttttgcagcaacttggatggagctggaggccattattctaagtgaagtaactcaggaatggaaaaccaaatatcgtatgttctcacttataagtgggagctaagctatgaggacgcaaaggcataagaatgatataatggactttggggactcggggggaagggtgggaggggggtgagggataaaagactacatattgggtacagtgtacactgctcgggtgacgggtgcaccaaaatctcagaaatcaccactaaagaacttatccatgtaaccaaaaaccacctgtacccccaaaaactattgaaataaaaaaa
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF479 245 6.4 Weakly correlated
2 ZNF382 167 99.0 Weakly correlated
3 ZNF248 86 99.0 Weakly correlated
4 ZNF317 77 99.0 Weakly correlated
5 ZNF81 76 99.0 Weakly correlated
6 ZNF528 73 43.0 Weakly correlated
7 ZNF490 50 43.0 Weakly correlated
8 ZNF136 48 74.0 Highly correlated
9 ZNF679 36 28.9 Weakly correlated
10 ZNF84 34 99.0 Weakly correlated
11 ZNF486 31 8.6 Weakly correlated
12 ZNF160 27 74.0 Highly correlated
13 ZNF558 27 99.0 Weakly correlated
14 ZNF394 25 99.0 Weakly correlated
15 ZNF766 17 43.0 Weakly correlated
16 ZIM3 16 87.0 Weakly correlated
17 ZNF263 16 180.0 Weakly correlated
18 ZNF92 16 28.9 Weakly correlated
19 ZNF723 15 15.2 Weakly correlated
20 ZNF680 14 28.9 Weakly correlated
21 ZFP57 13 87.0 Weakly correlated
22 ZNF133 13 99.0 Weakly correlated
23 ZNF705B 12 28.9 Weakly correlated
24 ZNF793 12 99.0 Weakly correlated
25 ZNF8 12 99.0 Weakly correlated
26 ZNF2 11 99.0 Weakly correlated
27 ZNF705D 11 28.9 Weakly correlated
28 ZNF735 11 28.9 Weakly correlated
29 ZNF211 10 94.0 Weakly correlated
30 ZNF75D 10 94.0 Weakly correlated
31 ZFP37 9 99.0 Weakly correlated
32 ZNF251 9 94.0 Weakly correlated
33 ZNF506 9 28.9 Weakly correlated
34 ZNF101 8 43.0 Weakly correlated
35 ZNF140 8 99.0 Weakly correlated
36 ZNF534 8 19.6 Weakly correlated
37 ZNF175 6 94.0 Weakly correlated
38 ZNF182 6 99.0 Weakly correlated
39 ZNF18 6 160.0 Weakly correlated
40 ZNF257 6 0.0 Weakly correlated
41 ZNF701 6 28.9 Weakly correlated
42 ZNF786 6 99.0 Weakly correlated
43 ZFP69B 5 99.0 Weakly correlated
44 ZNF429 5 28.9 Weakly correlated
45 ZNF28 4 28.9 Weakly correlated
46 ZNF485 4 94.0 Weakly correlated
47 ZNF554 4 99.0 Weakly correlated
48 ZFP90 3 99.0 Weakly correlated
49 ZKSCAN8 3 160.0 Weakly correlated
50 ZNF324 3 99.0 Weakly correlated
51 ZNF440 3 28.9 Weakly correlated
52 ZNF441 3 43.0 Weakly correlated
53 ZNF471 3 94.0 Weakly correlated
54 ZNF695 3 28.9 Weakly correlated
55 ZKSCAN1 2 160.0 Weakly correlated
56 ZNF169 2 94.0 Weakly correlated
57 ZNF197 2 99.0 Weakly correlated
58 ZNF264 2 99.0 Weakly correlated
59 ZNF287 2 99.0 Weakly correlated
60 ZNF33A 2 99.0 Weakly correlated
61 ZNF445 2 99.0 Weakly correlated
62 ZNF519 2 19.6 Weakly correlated
63 ZNF547 2 74.0 Highly correlated
64 ZNF584 2 99.0 Weakly correlated
65 ZNF589 2 28.9 Weakly correlated
66 ZNF597 2 94.0 Weakly correlated
67 ZNF610 2 28.9 Weakly correlated
68 ZNF674 2 99.0 Weakly correlated
69 ZNF778 2 74.0 Highly correlated
70 ZNF799 2 43.0 Weakly correlated
71 ZNF879 2 99.0 Weakly correlated
72 ZKSCAN2 1 180.0 Weakly correlated
73 ZNF230 1 28.9 Weakly correlated
74 ZNF250 1 99.0 Weakly correlated
75 ZNF26 1 99.0 Weakly correlated
76 ZNF274 1 99.0 Weakly correlated
77 ZNF282 1 319.0 Weakly correlated
78 ZNF320 1 28.9 Weakly correlated
79 ZNF337 1 43.0 Weakly correlated
80 ZNF343 1 74.0 Highly correlated
81 ZNF383 1 99.0 Weakly correlated
82 ZNF43 1 43.0 Weakly correlated
83 ZNF44 1 43.0 Weakly correlated
84 ZNF510 1 99.0 Weakly correlated
85 ZNF560 1 43.0 Weakly correlated
86 ZNF567 1 99.0 Weakly correlated
87 ZNF570 1 99.0 Weakly correlated
88 ZNF585A 1 99.0 Weakly correlated
89 ZNF585B 1 99.0 Weakly correlated
90 ZNF607 1 43.0 Weakly correlated
91 ZNF613 1 99.0 Weakly correlated
92 ZNF630 1 94.0 Weakly correlated
93 ZNF700 1 28.9 Weakly correlated
94 ZNF705E 1 0.0 Weakly correlated
95 ZNF707 1 74.0 Highly correlated
96 ZNF765 1 8.6 Weakly correlated
97 ZNF777 1 319.0 Weakly correlated
98 ZNF780A 1 43.0 Weakly correlated
99 ZNF808 1 19.6 Weakly correlated
100 ZNF91 1 6.0 Weakly correlated
101 ZNF93 1 8.6 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF479 219 6.4 Weakly correlated
2 ZNF248 84 99.0 Weakly correlated
3 ZNF81 71 99.0 Weakly correlated
4 ZNF490 48 43.0 Weakly correlated
5 ZNF382 47 99.0 Weakly correlated
6 ZNF136 42 74.0 Highly correlated
7 ZNF84 32 99.0 Weakly correlated
8 ZNF528 31 43.0 Weakly correlated
9 ZNF317 27 99.0 Weakly correlated
10 ZNF160 24 74.0 Highly correlated
11 ZNF486 21 8.6 Weakly correlated
12 ZNF133 14 99.0 Weakly correlated
13 ZNF92 13 28.9 Weakly correlated
14 ZNF558 13 99.0 Weakly correlated
15 ZNF735 11 28.9 Weakly correlated
16 ZNF8 11 99.0 Weakly correlated
17 ZIM3 10 87.0 Weakly correlated
18 ZNF723 9 15.2 Weakly correlated
19 ZNF263 7 180.0 Weakly correlated
20 ZNF534 6 19.6 Weakly correlated
21 ZNF211 6 94.0 Weakly correlated
22 ZNF140 6 99.0 Weakly correlated
23 ZFP57 5 87.0 Weakly correlated
24 ZNF485 4 94.0 Weakly correlated
25 ZNF506 4 28.9 Weakly correlated
26 ZNF75D 4 94.0 Weakly correlated
27 ZNF679 3 28.9 Weakly correlated
28 ZNF440 3 28.9 Weakly correlated
29 ZFP90 3 99.0 Weakly correlated
30 ZNF786 3 99.0 Weakly correlated
31 ZNF793 3 99.0 Weakly correlated
32 ZNF251 3 94.0 Weakly correlated
33 ZNF471 3 94.0 Weakly correlated
34 ZNF394 3 99.0 Weakly correlated
35 ZNF101 3 43.0 Weakly correlated
36 ZNF674 2 99.0 Weakly correlated
37 ZNF429 2 28.9 Weakly correlated
38 ZNF879 2 99.0 Weakly correlated
39 ZNF287 2 99.0 Weakly correlated
40 ZNF257 2 0.0 Weakly correlated
41 ZNF705B 1 28.9 Weakly correlated
42 ZNF570 1 99.0 Weakly correlated
43 ZNF695 1 28.9 Weakly correlated
44 ZNF91 1 6.0 Weakly correlated
45 ZNF18 1 160.0 Weakly correlated
46 ZNF705D 1 28.9 Weakly correlated
47 ZNF680 1 28.9 Weakly correlated
48 ZNF250 1 99.0 Weakly correlated
49 ZNF777 1 319.0 Weakly correlated
50 ZNF264 1 99.0 Weakly correlated
51 ZNF28 1 28.9 Weakly correlated
52 ZNF320 1 28.9 Weakly correlated
53 ZNF766 1 43.0 Weakly correlated
54 ZNF44 1 43.0 Weakly correlated
55 ZNF337 1 43.0 Weakly correlated
56 ZNF2 1 99.0 Weakly correlated
57 ZNF282 1 319.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF211 94.0 Weakly correlated
2 ZNF263 180.0 Weakly correlated
3 ZNF486 8.6 Weakly correlated
4 ZNF723 15.2 Weakly correlated
5 ZNF84 99.0 Weakly correlated
6 ZNF92 28.9 Weakly correlated