ZRdb KZFP & Repeats
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LINE_L1PB1_3END

  • Name
    L1PB1_3END
  • Repbase
    L1PB1
  • Type
    LINE
  • Emergence
    74.0 Mya
  • Dfam Id
    DF0000347
Description :

ORF2 ends at bp ~684
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
ctaatatccagaatctacaangaactcaaacaaatcagcaagaaaaaaacaaacaatcccatcaaaaagtgggctaaggacatgaatagacaattctcaaaagaagatatacaaatggccaacaaacatatgaaaaaatgctcaacatcactaatgatcagggaaatgcaaatcaaaaccacaatgcgataccaccttactcctgcaagaatggccataatcaaaaaatcaaaaaataatagatgttggcgtggatgcggtgaaaagggaacacttctacactgctggtgggaatgtaaactagtacaaccactatggaaaacagtgtggagattccttaaagaactaaaagtagaactaccatttgatccagcaatcccactactgggtatctacccagaggaaaagaagtcattatacgaaaaagatacttgcacacgcatgtttatagcagcacaattcgcaattgcaaaaatatggaaccagcccaaatgcccatcaatcaacgagtggataaagaaantgtggtatatatataccatggaatactactcagccataaaaaggaatgaantaatggcattcgcagcgacctggatggaattggagactattattctaagtgaagtaactcaggaatggaaaaccaaacatcgtatgttctcactcataagtgggagctaagctatgaggacgcaaaggcataagaatgatacaatggactttggggactcgggggaaagggtgggaggggggtgagggataaaagactacanattgggtacagtgtacactgctcgggtgatgggtgcaccaaaatctcanaaatcaccactaaagaacttactcatgtaaccaaacaccacctgttccccaaaaacctatngaaataaaaaaa
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 1543 99.0 Weakly correlated
2 ZNF479 1325 6.4 Weakly correlated
3 ZNF317 606 99.0 Weakly correlated
4 ZNF248 590 99.0 Weakly correlated
5 ZNF490 531 43.0 Weakly correlated
6 ZNF528 476 43.0 Weakly correlated
7 ZNF81 315 99.0 Weakly correlated
8 ZNF558 313 99.0 Weakly correlated
9 ZNF160 312 74.0 Highly correlated
10 ZNF429 248 28.9 Weakly correlated
11 ZNF136 234 74.0 Highly correlated
12 ZNF263 176 180.0 Weakly correlated
13 ZNF486 166 8.6 Weakly correlated
14 ZNF680 162 28.9 Weakly correlated
15 ZNF735 161 28.9 Weakly correlated
16 ZIM3 159 87.0 Weakly correlated
17 ZNF793 155 99.0 Weakly correlated
18 ZNF394 144 99.0 Weakly correlated
19 ZNF766 128 43.0 Weakly correlated
20 ZNF723 121 15.2 Weakly correlated
21 ZNF679 111 28.9 Weakly correlated
22 ZNF2 108 99.0 Weakly correlated
23 ZNF534 104 19.6 Weakly correlated
24 ZNF8 102 99.0 Weakly correlated
25 ZNF18 101 160.0 Weakly correlated
26 ZNF879 66 99.0 Weakly correlated
27 ZNF140 65 99.0 Weakly correlated
28 ZNF610 61 28.9 Weakly correlated
29 ZNF133 59 99.0 Weakly correlated
30 ZNF471 59 94.0 Weakly correlated
31 ZNF92 54 28.9 Weakly correlated
32 ZNF182 51 99.0 Weakly correlated
33 ZNF554 51 99.0 Weakly correlated
34 ZNF101 49 43.0 Weakly correlated
35 ZNF251 48 94.0 Weakly correlated
36 ZFP37 47 99.0 Weakly correlated
37 ZFP69B 47 99.0 Weakly correlated
38 ZNF28 45 28.9 Weakly correlated
39 ZNF84 44 99.0 Weakly correlated
40 ZNF705B 43 28.9 Weakly correlated
41 ZFP57 38 87.0 Weakly correlated
42 ZNF701 38 28.9 Weakly correlated
43 ZNF547 36 74.0 Highly correlated
44 ZNF75D 36 94.0 Weakly correlated
45 ZNF257 35 0.0 Weakly correlated
46 ZNF589 35 28.9 Weakly correlated
47 ZNF705D 35 28.9 Weakly correlated
48 ZNF175 33 94.0 Weakly correlated
49 ZNF324 32 99.0 Weakly correlated
50 ZNF211 31 94.0 Weakly correlated
51 ZFP90 30 99.0 Weakly correlated
52 ZKSCAN1 30 160.0 Weakly correlated
53 ZNF320 30 28.9 Weakly correlated
54 ZNF274 29 99.0 Weakly correlated
55 ZNF197 24 99.0 Weakly correlated
56 ZNF506 24 28.9 Weakly correlated
57 ZNF485 23 94.0 Weakly correlated
58 ZNF584 21 99.0 Weakly correlated
59 ZNF440 19 28.9 Weakly correlated
60 ZNF786 19 99.0 Weakly correlated
61 ZNF250 18 99.0 Weakly correlated
62 ZNF585B 18 99.0 Weakly correlated
63 ZNF707 17 74.0 Highly correlated
64 ZNF264 16 99.0 Weakly correlated
65 ZNF585A 15 99.0 Weakly correlated
66 ZKSCAN8 14 160.0 Weakly correlated
67 ZNF674 14 99.0 Weakly correlated
68 ZNF792 12 94.0 Weakly correlated
69 ZNF287 11 99.0 Weakly correlated
70 ZNF549 11 87.0 Weakly correlated
71 ZNF418 10 43.0 Weakly correlated
72 ZNF202 9 160.0 Weakly correlated
73 ZNF468 9 28.9 Weakly correlated
74 ZNF597 9 94.0 Weakly correlated
75 ZNF641 9 99.0 Weakly correlated
76 ZNF778 9 74.0 Highly correlated
77 ZNF878 9 43.0 Weakly correlated
78 ZNF141 8 43.0 Weakly correlated
79 ZNF169 8 94.0 Weakly correlated
80 ZNF425 8 94.0 Weakly correlated
81 ZNF441 8 43.0 Weakly correlated
82 ZNF519 8 19.6 Weakly correlated
83 ZNF26 7 99.0 Weakly correlated
84 ZNF284 7 43.0 Weakly correlated
85 ZNF605 7 99.0 Weakly correlated
86 ZNF44 6 43.0 Weakly correlated
87 ZNF483 6 99.0 Weakly correlated
88 ZNF560 6 43.0 Weakly correlated
89 ZNF563 6 28.9 Weakly correlated
90 ZNF224 5 69.0 Moderately correlated
91 ZNF33A 5 99.0 Weakly correlated
92 ZNF347 5 43.0 Weakly correlated
93 ZNF354A 5 99.0 Weakly correlated
94 ZNF695 5 28.9 Weakly correlated
95 ZNF765 5 8.6 Weakly correlated
96 ZNF777 5 319.0 Weakly correlated
97 ZNF331 4 94.0 Weakly correlated
98 ZNF350 4 99.0 Weakly correlated
99 ZNF383 4 99.0 Weakly correlated
100 ZNF41 4 99.0 Weakly correlated
101 ZNF454 4 99.0 Weakly correlated
102 ZNF510 4 99.0 Weakly correlated
103 ZNF616 4 43.0 Weakly correlated
104 ZNF671 4 94.0 Weakly correlated
105 ZNF675 4 8.6 Weakly correlated
106 ZNF677 4 99.0 Weakly correlated
107 ZNF808 4 19.6 Weakly correlated
108 ZNF845 4 28.9 Weakly correlated
109 ZNF91 4 6.0 Weakly correlated
110 ZNF114 3 28.9 Weakly correlated
111 ZNF273 3 28.9 Weakly correlated
112 ZNF334 3 99.0 Weakly correlated
113 ZNF433 3 43.0 Weakly correlated
114 ZNF445 3 99.0 Weakly correlated
115 ZNF682 3 28.9 Weakly correlated
116 ZNF823 3 43.0 Weakly correlated
117 ZNF12 2 99.0 Weakly correlated
118 ZNF189 2 99.0 Weakly correlated
119 ZNF282 2 319.0 Weakly correlated
120 ZNF559 2 74.0 Highly correlated
121 ZNF568 2 99.0 Weakly correlated
122 ZNF573 2 94.0 Weakly correlated
123 ZNF586 2 43.0 Weakly correlated
124 ZNF700 2 28.9 Weakly correlated
125 ZNF789 2 99.0 Weakly correlated
126 ZNF799 2 43.0 Weakly correlated
127 ZNF816 2 28.9 Weakly correlated
128 ZNF93 2 8.6 Weakly correlated
129 ZFP14 1 99.0 Weakly correlated
130 ZFP30 1 99.0 Weakly correlated
131 ZFP69 1 99.0 Weakly correlated
132 ZKSCAN2 1 180.0 Weakly correlated
133 ZNF100 1 28.9 Weakly correlated
134 ZNF135 1 94.0 Weakly correlated
135 ZNF157 1 99.0 Weakly correlated
136 ZNF17 1 69.0 Moderately correlated
137 ZNF19 1 99.0 Weakly correlated
138 ZNF223 1 43.0 Weakly correlated
139 ZNF227 1 99.0 Weakly correlated
140 ZNF230 1 28.9 Weakly correlated
141 ZNF234 1 99.0 Weakly correlated
142 ZNF253 1 19.6 Weakly correlated
143 ZNF283 1 99.0 Weakly correlated
144 ZNF302 1 43.0 Weakly correlated
145 ZNF30 1 94.0 Weakly correlated
146 ZNF337 1 43.0 Weakly correlated
147 ZNF343 1 74.0 Highly correlated
148 ZNF354C 1 99.0 Weakly correlated
149 ZNF430 1 19.6 Weakly correlated
150 ZNF442 1 43.0 Weakly correlated
151 ZNF443 1 19.6 Weakly correlated
152 ZNF45 1 99.0 Weakly correlated
153 ZNF484 1 99.0 Weakly correlated
154 ZNF551 1 94.0 Weakly correlated
155 ZNF555 1 94.0 Weakly correlated
156 ZNF561 1 43.0 Weakly correlated
157 ZNF562 1 28.9 Weakly correlated
158 ZNF567 1 99.0 Weakly correlated
159 ZNF570 1 99.0 Weakly correlated
160 ZNF571 1 99.0 Weakly correlated
161 ZNF583 1 99.0 Weakly correlated
162 ZNF607 1 43.0 Weakly correlated
163 ZNF630 1 94.0 Weakly correlated
164 ZNF649 1 28.9 Weakly correlated
165 ZNF669 1 43.0 Weakly correlated
166 ZNF780A 1 43.0 Weakly correlated
167 ZNF780B 1 74.0 Highly correlated
168 ZNF836 1 43.0 Weakly correlated
169 ZNF850 1 28.9 Weakly correlated
170 ZNF85 1 28.9 Weakly correlated
171 ZNF891 1 99.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF479 1176 6.4 Weakly correlated
2 ZNF248 571 99.0 Weakly correlated
3 ZNF490 515 43.0 Weakly correlated
4 ZNF382 421 99.0 Weakly correlated
5 ZNF160 309 74.0 Highly correlated
6 ZNF317 296 99.0 Weakly correlated
7 ZNF81 293 99.0 Weakly correlated
8 ZNF136 208 74.0 Highly correlated
9 ZNF558 176 99.0 Weakly correlated
10 ZNF528 165 43.0 Weakly correlated
11 ZNF735 153 28.9 Weakly correlated
12 ZIM3 111 87.0 Weakly correlated
13 ZNF486 96 8.6 Weakly correlated
14 ZNF723 83 15.2 Weakly correlated
15 ZNF8 82 99.0 Weakly correlated
16 ZNF263 71 180.0 Weakly correlated
17 ZNF534 63 19.6 Weakly correlated
18 ZNF879 59 99.0 Weakly correlated
19 ZNF680 53 28.9 Weakly correlated
20 ZNF471 45 94.0 Weakly correlated
21 ZNF133 42 99.0 Weakly correlated
22 ZNF793 39 99.0 Weakly correlated
23 ZNF429 36 28.9 Weakly correlated
24 ZNF101 35 43.0 Weakly correlated
25 ZNF84 33 99.0 Weakly correlated
26 ZNF140 31 99.0 Weakly correlated
27 ZNF2 31 99.0 Weakly correlated
28 ZFP90 29 99.0 Weakly correlated
29 ZNF766 22 43.0 Weakly correlated
30 ZNF75D 20 94.0 Weakly correlated
31 ZNF257 18 0.0 Weakly correlated
32 ZNF211 18 94.0 Weakly correlated
33 ZNF250 18 99.0 Weakly correlated
34 ZNF485 17 94.0 Weakly correlated
35 ZFP57 16 87.0 Weakly correlated
36 ZNF506 16 28.9 Weakly correlated
37 ZNF554 16 99.0 Weakly correlated
38 ZNF679 15 28.9 Weakly correlated
39 ZNF92 15 28.9 Weakly correlated
40 ZNF440 15 28.9 Weakly correlated
41 ZNF786 15 99.0 Weakly correlated
42 ZNF701 14 28.9 Weakly correlated
43 ZNF264 12 99.0 Weakly correlated
44 ZNF18 12 160.0 Weakly correlated
45 ZNF674 12 99.0 Weakly correlated
46 ZNF707 10 74.0 Highly correlated
47 ZNF394 9 99.0 Weakly correlated
48 ZNF585A 9 99.0 Weakly correlated
49 ZNF320 9 28.9 Weakly correlated
50 ZNF28 8 28.9 Weakly correlated
51 ZNF202 8 160.0 Weakly correlated
52 ZNF641 7 99.0 Weakly correlated
53 ZNF792 6 94.0 Weakly correlated
54 ZNF610 6 28.9 Weakly correlated
55 ZNF287 6 99.0 Weakly correlated
56 ZNF44 6 43.0 Weakly correlated
57 ZNF251 5 94.0 Weakly correlated
58 ZNF705D 5 28.9 Weakly correlated
59 ZNF468 5 28.9 Weakly correlated
60 ZFP69B 4 99.0 Weakly correlated
61 ZFP37 3 99.0 Weakly correlated
62 ZNF141 3 43.0 Weakly correlated
63 ZNF597 3 94.0 Weakly correlated
64 ZNF175 3 94.0 Weakly correlated
65 ZNF347 3 43.0 Weakly correlated
66 ZNF695 3 28.9 Weakly correlated
67 ZNF585B 3 99.0 Weakly correlated
68 ZNF705B 3 28.9 Weakly correlated
69 ZNF425 3 94.0 Weakly correlated
70 ZNF483 3 99.0 Weakly correlated
71 ZNF350 3 99.0 Weakly correlated
72 ZNF354A 3 99.0 Weakly correlated
73 ZKSCAN1 2 160.0 Weakly correlated
74 ZNF324 2 99.0 Weakly correlated
75 ZNF816 2 28.9 Weakly correlated
76 ZNF33A 2 99.0 Weakly correlated
77 ZNF383 2 99.0 Weakly correlated
78 ZNF189 2 99.0 Weakly correlated
79 ZNF197 2 99.0 Weakly correlated
80 ZNF433 2 43.0 Weakly correlated
81 ZNF589 2 28.9 Weakly correlated
82 ZNF677 2 99.0 Weakly correlated
83 ZNF26 1 99.0 Weakly correlated
84 ZNF343 1 74.0 Highly correlated
85 ZNF519 1 19.6 Weakly correlated
86 ZNF549 1 87.0 Weakly correlated
87 ZNF573 1 94.0 Weakly correlated
88 ZNF765 1 8.6 Weakly correlated
89 ZNF605 1 99.0 Weakly correlated
90 ZNF169 1 94.0 Weakly correlated
91 ZNF182 1 99.0 Weakly correlated
92 ZNF273 1 28.9 Weakly correlated
93 ZNF675 1 8.6 Weakly correlated
94 ZNF823 1 43.0 Weakly correlated
95 ZKSCAN8 1 160.0 Weakly correlated
96 ZNF563 1 28.9 Weakly correlated
97 ZNF778 1 74.0 Highly correlated
98 ZNF41 1 99.0 Weakly correlated
99 ZNF671 1 94.0 Weakly correlated
100 ZNF253 1 19.6 Weakly correlated
101 ZNF584 1 99.0 Weakly correlated
102 ZNF780B 1 74.0 Highly correlated
103 ZNF282 1 319.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZFP57 87.0 Weakly correlated
2 ZNF211 94.0 Weakly correlated
3 ZNF257 0.0 Weakly correlated
4 ZNF263 180.0 Weakly correlated
5 ZNF2 99.0 Weakly correlated
6 ZNF382 99.0 Weakly correlated
7 ZNF486 8.6 Weakly correlated
8 ZNF554 99.0 Weakly correlated
9 ZNF610 28.9 Weakly correlated
10 ZNF680 28.9 Weakly correlated
11 ZNF701 28.9 Weakly correlated
12 ZNF792 94.0 Weakly correlated
13 ZNF84 99.0 Weakly correlated
14 ZNF92 28.9 Weakly correlated