ZRdb KZFP & Repeats
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LINE_L1PA8_3END

  • Name
    L1PA8_3END
  • Repbase
    L1PA8
  • Type
    LINE
  • Emergence
    74.0 Mya
  • Dfam Id
    DF0000345
Description :

ORF2 ends at bp ~684
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
ctaatatccagaatctacaaggaacttaaacaaatttacaagaaaaaaacaaacaaccccatcaaaaagtgggcgaaggatatgaacagacacttctcaaaagaagacatttatgcggccaacaaacatatgaaaaaaagctcatcatcactggtcattagagaaatgcaaatcaaaaccacaatgagataccatctcacgccagttagaatggcgatcattaaaaagtcaggaaacaacagatgctggcgaggatgtggagaaataggaacgcttttacactgttggtgggagtgtaaattagttcaaccattgtggaagacagtgtggcgattcctcaaggatctagaaccagaaataccatttgacccagcaatcccattactgggtatatacccaaaggattataaatcattctactataaagacacatgcacacgtatgtttattgcagcactatttacaatagcaaagacttggaaccaacccaaatgcccatcaatgatagactggataaagaaaatgtggcacatatacaccatggaatactatgcagccataaaaaagaatgagttcatgtcctttgcagggacatggatgaagctggaagccatcattctcagcaaactaacacaggaacagaaaaccaaacaccgcatgttctcactcataagtgggagttgaacaatgagaacacatggacacagggaggggaacatcacacaccggggcctgtcggggggtggggggcaaggggagggagagcattaggacaaatacctaatgcatgcggggcttaaaacctagatgacgggttgataggtgcagcaaaccaccatggcacatgtatacctatgtaacaaacctgcacgttctgcacatgtatcccagaacttaaagtaaaataaaaaaaaaaaaa
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF486 934 8.6 Weakly correlated
2 ZNF382 351 99.0 Weakly correlated
3 ZNF84 254 99.0 Weakly correlated
4 ZNF490 207 43.0 Weakly correlated
5 ZNF92 169 28.9 Weakly correlated
6 ZNF248 154 99.0 Weakly correlated
7 ZNF317 129 99.0 Weakly correlated
8 ZIM3 123 87.0 Weakly correlated
9 ZNF534 105 19.6 Weakly correlated
10 ZNF705B 98 28.9 Weakly correlated
11 ZNF679 73 28.9 Weakly correlated
12 ZNF479 69 6.4 Weakly correlated
13 ZNF705D 47 28.9 Weakly correlated
14 ZNF17 44 69.0 Moderately correlated
15 ZNF558 44 99.0 Weakly correlated
16 ZNF394 40 99.0 Weakly correlated
17 ZNF766 40 43.0 Weakly correlated
18 ZNF8 40 99.0 Weakly correlated
19 ZNF141 39 43.0 Weakly correlated
20 ZNF680 39 28.9 Weakly correlated
21 ZNF75D 36 94.0 Weakly correlated
22 ZNF2 35 99.0 Weakly correlated
23 ZNF425 31 94.0 Weakly correlated
24 ZNF136 27 74.0 Highly correlated
25 ZNF93 25 8.6 Weakly correlated
26 ZFP90 24 99.0 Weakly correlated
27 ZNF723 22 15.2 Weakly correlated
28 ZFP37 20 99.0 Weakly correlated
29 ZFP57 20 87.0 Weakly correlated
30 ZKSCAN1 19 160.0 Weakly correlated
31 ZFP69B 18 99.0 Weakly correlated
32 ZNF263 18 180.0 Weakly correlated
33 ZNF324 18 99.0 Weakly correlated
34 ZNF133 17 99.0 Weakly correlated
35 ZNF251 16 94.0 Weakly correlated
36 ZNF485 16 94.0 Weakly correlated
37 ZNF101 15 43.0 Weakly correlated
38 ZNF18 15 160.0 Weakly correlated
39 ZNF519 14 19.6 Weakly correlated
40 ZNF583 12 99.0 Weakly correlated
41 ZNF589 12 28.9 Weakly correlated
42 ZNF10 10 99.0 Weakly correlated
43 ZNF175 10 94.0 Weakly correlated
44 ZNF334 9 99.0 Weakly correlated
45 ZNF429 9 28.9 Weakly correlated
46 ZNF471 9 94.0 Weakly correlated
47 ZNF528 9 43.0 Weakly correlated
48 ZNF28 8 28.9 Weakly correlated
49 ZNF578 8 15.2 Weakly correlated
50 ZNF610 8 28.9 Weakly correlated
51 ZNF792 8 94.0 Weakly correlated
52 ZKSCAN8 7 160.0 Weakly correlated
53 ZNF140 7 99.0 Weakly correlated
54 ZNF182 7 99.0 Weakly correlated
55 ZNF264 7 99.0 Weakly correlated
56 ZNF274 7 99.0 Weakly correlated
57 ZNF441 7 43.0 Weakly correlated
58 ZNF793 7 99.0 Weakly correlated
59 ZNF354A 6 99.0 Weakly correlated
60 ZNF468 6 28.9 Weakly correlated
61 ZNF701 6 28.9 Weakly correlated
62 ZNF808 6 19.6 Weakly correlated
63 ZNF160 5 74.0 Highly correlated
64 ZNF250 5 99.0 Weakly correlated
65 ZNF585A 5 99.0 Weakly correlated
66 ZNF585B 5 99.0 Weakly correlated
67 ZNF597 5 94.0 Weakly correlated
68 ZNF707 5 74.0 Highly correlated
69 ZNF735 5 28.9 Weakly correlated
70 ZNF765 5 8.6 Weakly correlated
71 ZNF777 5 319.0 Weakly correlated
72 ZNF786 5 99.0 Weakly correlated
73 ZNF506 4 28.9 Weakly correlated
74 ZNF547 4 74.0 Highly correlated
75 ZNF560 4 43.0 Weakly correlated
76 ZNF649 4 28.9 Weakly correlated
77 ZNF780A 4 43.0 Weakly correlated
78 ZNF85 4 28.9 Weakly correlated
79 ZNF100 3 28.9 Weakly correlated
80 ZNF197 3 99.0 Weakly correlated
81 ZNF257 3 0.0 Weakly correlated
82 ZNF337 3 43.0 Weakly correlated
83 ZNF554 3 99.0 Weakly correlated
84 ZNF584 3 99.0 Weakly correlated
85 ZNF605 3 99.0 Weakly correlated
86 ZNF677 3 99.0 Weakly correlated
87 ZNF695 3 28.9 Weakly correlated
88 ZNF878 3 43.0 Weakly correlated
89 ZNF879 3 99.0 Weakly correlated
90 ZNF91 3 6.0 Weakly correlated
91 ZFP28 2 99.0 Weakly correlated
92 ZKSCAN5 2 160.0 Weakly correlated
93 ZNF114 2 28.9 Weakly correlated
94 ZNF157 2 99.0 Weakly correlated
95 ZNF169 2 94.0 Weakly correlated
96 ZNF202 2 160.0 Weakly correlated
97 ZNF26 2 99.0 Weakly correlated
98 ZNF282 2 319.0 Weakly correlated
99 ZNF284 2 43.0 Weakly correlated
100 ZNF287 2 99.0 Weakly correlated
101 ZNF350 2 99.0 Weakly correlated
102 ZNF440 2 28.9 Weakly correlated
103 ZNF445 2 99.0 Weakly correlated
104 ZNF44 2 43.0 Weakly correlated
105 ZNF483 2 99.0 Weakly correlated
106 ZNF568 2 99.0 Weakly correlated
107 ZNF669 2 43.0 Weakly correlated
108 ZNF700 2 28.9 Weakly correlated
109 ZNF81 2 99.0 Weakly correlated
110 ZFP30 1 99.0 Weakly correlated
111 ZNF135 1 94.0 Weakly correlated
112 ZNF222 1 43.0 Weakly correlated
113 ZNF224 1 69.0 Moderately correlated
114 ZNF273 1 28.9 Weakly correlated
115 ZNF320 1 28.9 Weakly correlated
116 ZNF331 1 94.0 Weakly correlated
117 ZNF333 1 99.0 Weakly correlated
118 ZNF347 1 43.0 Weakly correlated
119 ZNF41 1 99.0 Weakly correlated
120 ZNF430 1 19.6 Weakly correlated
121 ZNF431 1 28.9 Weakly correlated
122 ZNF500 1 160.0 Weakly correlated
123 ZNF510 1 99.0 Weakly correlated
124 ZNF543 1 99.0 Weakly correlated
125 ZNF563 1 28.9 Weakly correlated
126 ZNF567 1 99.0 Weakly correlated
127 ZNF611 1 19.6 Weakly correlated
128 ZNF626 1 0.0 Weakly correlated
129 ZNF674 1 99.0 Weakly correlated
130 ZNF682 1 28.9 Weakly correlated
131 ZNF727 1 19.6 Weakly correlated
132 ZNF77 1 87.0 Weakly correlated
133 ZNF789 1 99.0 Weakly correlated
134 ZNF823 1 43.0 Weakly correlated
135 ZNF891 1 99.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF486 735 8.6 Weakly correlated
2 ZNF84 240 99.0 Weakly correlated
3 ZNF490 162 43.0 Weakly correlated
4 ZNF248 148 99.0 Weakly correlated
5 ZNF92 129 28.9 Weakly correlated
6 ZIM3 94 87.0 Weakly correlated
7 ZNF534 84 19.6 Weakly correlated
8 ZNF382 81 99.0 Weakly correlated
9 ZNF479 48 6.4 Weakly correlated
10 ZNF17 44 69.0 Moderately correlated
11 ZNF141 35 43.0 Weakly correlated
12 ZNF317 34 99.0 Weakly correlated
13 ZNF8 32 99.0 Weakly correlated
14 ZNF425 25 94.0 Weakly correlated
15 ZFP90 22 99.0 Weakly correlated
16 ZNF679 21 28.9 Weakly correlated
17 ZNF136 20 74.0 Highly correlated
18 ZNF93 20 8.6 Weakly correlated
19 ZNF75D 19 94.0 Weakly correlated
20 ZNF558 14 99.0 Weakly correlated
21 ZFP57 12 87.0 Weakly correlated
22 ZNF10 10 99.0 Weakly correlated
23 ZNF766 9 43.0 Weakly correlated
24 ZNF101 9 43.0 Weakly correlated
25 ZNF723 9 15.2 Weakly correlated
26 ZNF263 8 180.0 Weakly correlated
27 ZNF324 8 99.0 Weakly correlated
28 ZNF485 7 94.0 Weakly correlated
29 ZNF680 5 28.9 Weakly correlated
30 ZNF140 5 99.0 Weakly correlated
31 ZNF468 5 28.9 Weakly correlated
32 ZNF765 5 8.6 Weakly correlated
33 ZNF250 5 99.0 Weakly correlated
34 ZNF649 4 28.9 Weakly correlated
35 ZNF264 4 99.0 Weakly correlated
36 ZNF701 4 28.9 Weakly correlated
37 ZNF334 4 99.0 Weakly correlated
38 ZNF85 4 28.9 Weakly correlated
39 ZNF354A 4 99.0 Weakly correlated
40 ZNF337 3 43.0 Weakly correlated
41 ZNF707 3 74.0 Highly correlated
42 ZNF18 3 160.0 Weakly correlated
43 ZNF780A 3 43.0 Weakly correlated
44 ZNF251 3 94.0 Weakly correlated
45 ZNF735 3 28.9 Weakly correlated
46 ZNF786 3 99.0 Weakly correlated
47 ZNF394 3 99.0 Weakly correlated
48 ZNF81 2 99.0 Weakly correlated
49 ZNF677 2 99.0 Weakly correlated
50 ZNF133 2 99.0 Weakly correlated
51 ZNF793 2 99.0 Weakly correlated
52 ZNF695 2 28.9 Weakly correlated
53 ZNF429 2 28.9 Weakly correlated
54 ZNF471 2 94.0 Weakly correlated
55 ZNF282 2 319.0 Weakly correlated
56 ZKSCAN5 2 160.0 Weakly correlated
57 ZNF605 2 99.0 Weakly correlated
58 ZNF585A 2 99.0 Weakly correlated
59 ZNF792 2 94.0 Weakly correlated
60 ZNF44 2 43.0 Weakly correlated
61 ZNF879 1 99.0 Weakly correlated
62 ZNF519 1 19.6 Weakly correlated
63 ZNF528 1 43.0 Weakly correlated
64 ZFP28 1 99.0 Weakly correlated
65 ZNF626 1 0.0 Weakly correlated
66 ZNF202 1 160.0 Weakly correlated
67 ZNF331 1 94.0 Weakly correlated
68 ZNF287 1 99.0 Weakly correlated
69 ZNF257 1 0.0 Weakly correlated
70 ZNF160 1 74.0 Highly correlated
71 ZNF610 1 28.9 Weakly correlated
72 ZNF589 1 28.9 Weakly correlated
73 ZNF483 1 99.0 Weakly correlated
74 ZNF705B 1 28.9 Weakly correlated
75 ZNF506 1 28.9 Weakly correlated
76 ZNF2 1 99.0 Weakly correlated
77 ZNF789 1 99.0 Weakly correlated
78 ZNF705D 1 28.9 Weakly correlated
79 ZNF440 1 28.9 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZFP57 87.0 Weakly correlated
2 ZNF248 99.0 Weakly correlated
3 ZNF263 180.0 Weakly correlated
4 ZNF317 99.0 Weakly correlated
5 ZNF485 94.0 Weakly correlated
6 ZNF486 8.6 Weakly correlated
7 ZNF75D 94.0 Weakly correlated
8 ZNF84 99.0 Weakly correlated
9 ZNF92 28.9 Weakly correlated