ZRdb KZFP & Repeats
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LINE_L1PA8A_3END

  • Name
    L1PA8A_3END
  • Repbase
    No find
  • Type
    LINE
  • Emergence
    74.0 Mya
  • Dfam Id
    DF0000346
Description :

Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
ctaatatccagaatttacaaggaacttaaacaaatttacaagaaaaaaacaaacaaccccatcaaaaagtgggcaaaggatatgaacagacacttctcaaaagaagacatttacgcggccaacaaacatatgaaaaaaagctcaacatcactgatcatcagagaaatgcaaatcaaaaccacaatgagataccatctcacgccagtcagaatggcgattattaaaaagtcaggaaacaatagatgctggcgaggctgtggagaaataggaacgcttttacactgttggtgggaatgtaaattagttcaaccattgtggaagacagtatggcgattcctcaaggatctagaaccagaaataccatttgacccagcaatcccattactgggtatatacccaaaggaatataaatcattctactataaagacacatgcacacgtatgtttattgcagcactatttacaatagcaaagacatggaaccaacccaaatgcccatcaatgatagactggataaagaaaatgtggtacatatacaccatggaatactatgcagccataaaaaggaatgagatcatgtcctttgcagggacatggatgaagctggaagccatcatcctcagcaaactaacacaggaacagaaaaccaaacaccgcatgttctcactcataagtgggagttgaacantgagaacacatggacacagagaggggaacaacacacaccagggcctgttggggggtggggggtgaggggagggaacttagaggacgggtcaataggtgcagcaaaccaccatggcacacgtatacctatgtaacaaacctgcacgttctgcacatgtatcccgnttcttagaagaaataaagaaaaaaaa
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 368 99.0 Weakly correlated
2 ZNF486 191 8.6 Weakly correlated
3 ZNF490 145 43.0 Weakly correlated
4 ZNF84 137 99.0 Weakly correlated
5 ZNF92 118 28.9 Weakly correlated
6 ZIM3 100 87.0 Weakly correlated
7 ZNF317 74 99.0 Weakly correlated
8 ZNF679 65 28.9 Weakly correlated
9 ZNF248 54 99.0 Weakly correlated
10 ZNF534 38 19.6 Weakly correlated
11 ZNF8 32 99.0 Weakly correlated
12 ZNF680 20 28.9 Weakly correlated
13 ZNF136 18 74.0 Highly correlated
14 ZNF425 18 94.0 Weakly correlated
15 ZNF793 17 99.0 Weakly correlated
16 ZNF394 16 99.0 Weakly correlated
17 ZFP57 15 87.0 Weakly correlated
18 ZNF723 14 15.2 Weakly correlated
19 ZNF251 12 94.0 Weakly correlated
20 ZNF766 12 43.0 Weakly correlated
21 ZNF263 11 180.0 Weakly correlated
22 ZNF519 11 19.6 Weakly correlated
23 ZNF75D 11 94.0 Weakly correlated
24 ZNF560 10 43.0 Weakly correlated
25 ZNF2 9 99.0 Weakly correlated
26 ZNF705B 9 28.9 Weakly correlated
27 ZNF274 8 99.0 Weakly correlated
28 ZFP90 7 99.0 Weakly correlated
29 ZFP69B 6 99.0 Weakly correlated
30 ZNF182 6 99.0 Weakly correlated
31 ZNF324 6 99.0 Weakly correlated
32 ZNF485 6 94.0 Weakly correlated
33 ZNF677 6 99.0 Weakly correlated
34 ZNF705D 6 28.9 Weakly correlated
35 ZNF101 5 43.0 Weakly correlated
36 ZNF140 5 99.0 Weakly correlated
37 ZNF18 5 160.0 Weakly correlated
38 ZNF441 5 43.0 Weakly correlated
39 ZNF471 5 94.0 Weakly correlated
40 ZNF479 5 6.4 Weakly correlated
41 ZFP69 4 99.0 Weakly correlated
42 ZNF10 4 99.0 Weakly correlated
43 ZNF202 4 160.0 Weakly correlated
44 ZNF468 4 28.9 Weakly correlated
45 ZNF483 4 99.0 Weakly correlated
46 ZNF558 4 99.0 Weakly correlated
47 ZNF585A 4 99.0 Weakly correlated
48 ZNF597 4 94.0 Weakly correlated
49 ZNF735 4 28.9 Weakly correlated
50 ZNF85 4 28.9 Weakly correlated
51 ZFP37 3 99.0 Weakly correlated
52 ZNF160 3 74.0 Highly correlated
53 ZNF26 3 99.0 Weakly correlated
54 ZNF28 3 28.9 Weakly correlated
55 ZNF320 3 28.9 Weakly correlated
56 ZNF433 3 43.0 Weakly correlated
57 ZNF554 3 99.0 Weakly correlated
58 ZNF583 3 99.0 Weakly correlated
59 ZNF610 3 28.9 Weakly correlated
60 ZFP28 2 99.0 Weakly correlated
61 ZKSCAN1 2 160.0 Weakly correlated
62 ZNF133 2 99.0 Weakly correlated
63 ZNF17 2 69.0 Moderately correlated
64 ZNF197 2 99.0 Weakly correlated
65 ZNF334 2 99.0 Weakly correlated
66 ZNF429 2 28.9 Weakly correlated
67 ZNF440 2 28.9 Weakly correlated
68 ZNF506 2 28.9 Weakly correlated
69 ZNF528 2 43.0 Weakly correlated
70 ZNF561 2 43.0 Weakly correlated
71 ZNF585B 2 99.0 Weakly correlated
72 ZNF695 2 28.9 Weakly correlated
73 ZNF718 2 19.6 Weakly correlated
74 ZNF786 2 99.0 Weakly correlated
75 ZIK1 1 87.0 Weakly correlated
76 ZNF114 1 28.9 Weakly correlated
77 ZNF124 1 43.0 Weakly correlated
78 ZNF141 1 43.0 Weakly correlated
79 ZNF169 1 94.0 Weakly correlated
80 ZNF175 1 94.0 Weakly correlated
81 ZNF195 1 28.9 Weakly correlated
82 ZNF211 1 94.0 Weakly correlated
83 ZNF214 1 99.0 Weakly correlated
84 ZNF253 1 19.6 Weakly correlated
85 ZNF257 1 0.0 Weakly correlated
86 ZNF287 1 99.0 Weakly correlated
87 ZNF354A 1 99.0 Weakly correlated
88 ZNF430 1 19.6 Weakly correlated
89 ZNF44 1 43.0 Weakly correlated
90 ZNF487 1 28.9 Weakly correlated
91 ZNF510 1 99.0 Weakly correlated
92 ZNF544 1 0.0 Weakly correlated
93 ZNF547 1 74.0 Highly correlated
94 ZNF555 1 94.0 Weakly correlated
95 ZNF563 1 28.9 Weakly correlated
96 ZNF605 1 99.0 Weakly correlated
97 ZNF611 1 19.6 Weakly correlated
98 ZNF616 1 43.0 Weakly correlated
99 ZNF675 1 8.6 Weakly correlated
100 ZNF682 1 28.9 Weakly correlated
101 ZNF700 1 28.9 Weakly correlated
102 ZNF701 1 28.9 Weakly correlated
103 ZNF717 1 0.0 Weakly correlated
104 ZNF761 1 19.6 Weakly correlated
105 ZNF765 1 8.6 Weakly correlated
106 ZNF773 1 94.0 Weakly correlated
107 ZNF777 1 319.0 Weakly correlated
108 ZNF823 1 43.0 Weakly correlated
109 ZNF879 1 99.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF486 148 8.6 Weakly correlated
2 ZNF84 136 99.0 Weakly correlated
3 ZNF382 97 99.0 Weakly correlated
4 ZNF92 96 28.9 Weakly correlated
5 ZNF490 95 43.0 Weakly correlated
6 ZIM3 76 87.0 Weakly correlated
7 ZNF248 49 99.0 Weakly correlated
8 ZNF534 35 19.6 Weakly correlated
9 ZNF317 35 99.0 Weakly correlated
10 ZNF8 27 99.0 Weakly correlated
11 ZNF425 16 94.0 Weakly correlated
12 ZNF136 15 74.0 Highly correlated
13 ZNF680 11 28.9 Weakly correlated
14 ZNF723 7 15.2 Weakly correlated
15 ZFP90 7 99.0 Weakly correlated
16 ZNF263 7 180.0 Weakly correlated
17 ZNF75D 7 94.0 Weakly correlated
18 ZNF793 7 99.0 Weakly correlated
19 ZNF679 5 28.9 Weakly correlated
20 ZFP69 4 99.0 Weakly correlated
21 ZNF479 4 6.4 Weakly correlated
22 ZNF677 4 99.0 Weakly correlated
23 ZNF10 4 99.0 Weakly correlated
24 ZNF485 4 94.0 Weakly correlated
25 ZNF471 3 94.0 Weakly correlated
26 ZNF140 3 99.0 Weakly correlated
27 ZNF735 3 28.9 Weakly correlated
28 ZNF324 3 99.0 Weakly correlated
29 ZNF468 3 28.9 Weakly correlated
30 ZNF18 3 160.0 Weakly correlated
31 ZNF85 2 28.9 Weakly correlated
32 ZFP57 2 87.0 Weakly correlated
33 ZNF554 2 99.0 Weakly correlated
34 ZNF394 2 99.0 Weakly correlated
35 ZNF558 2 99.0 Weakly correlated
36 ZNF433 2 43.0 Weakly correlated
37 ZNF765 2 8.6 Weakly correlated
38 ZNF786 2 99.0 Weakly correlated
39 ZNF17 1 69.0 Moderately correlated
40 ZNF440 1 28.9 Weakly correlated
41 ZNF560 1 43.0 Weakly correlated
42 ZNF26 1 99.0 Weakly correlated
43 ZNF585B 1 99.0 Weakly correlated
44 ZNF160 1 74.0 Highly correlated
45 ZNF766 1 43.0 Weakly correlated
46 ZNF114 1 28.9 Weakly correlated
47 ZFP69B 1 99.0 Weakly correlated
48 ZNF483 1 99.0 Weakly correlated
49 ZNF528 1 43.0 Weakly correlated
50 ZFP28 1 99.0 Weakly correlated
51 ZNF202 1 160.0 Weakly correlated
52 ZNF671 1 94.0 Weakly correlated
53 ZNF585A 1 99.0 Weakly correlated
54 ZNF506 1 28.9 Weakly correlated
55 ZNF101 1 43.0 Weakly correlated
56 ZNF141 1 43.0 Weakly correlated
57 ZIK1 1 87.0 Weakly correlated
58 ZNF2 1 99.0 Weakly correlated
59 ZNF823 1 43.0 Weakly correlated
60 ZNF257 1 0.0 Weakly correlated
61 ZNF211 1 94.0 Weakly correlated
62 ZNF251 1 94.0 Weakly correlated
63 ZNF320 1 28.9 Weakly correlated
64 ZNF44 1 43.0 Weakly correlated
65 ZNF649 1 28.9 Weakly correlated
66 ZNF563 1 28.9 Weakly correlated
67 ZNF597 1 94.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF248 99.0 Weakly correlated
2 ZNF263 180.0 Weakly correlated
3 ZNF486 8.6 Weakly correlated
4 ZNF680 28.9 Weakly correlated
5 ZNF84 99.0 Weakly correlated
6 ZNF92 28.9 Weakly correlated