ZRdb KZFP & Repeats
...

LINE_L1PA7_3END

  • Name
    L1PA7_3END
  • Repbase
    L1PA7
  • Type
    LINE
  • Emergence
    74.0 Mya
  • Dfam Id
    DF0000344
Description :

ORF2 ends at bp ~684
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
ctaatatccagaatctacaaggaacttaaacaaatttacaagaaaaaaacaaacaaccccatcaaaaagtgggcgaaggatatgaacagacacttctcaaaagaagacatttatgcggccaacaaacatatgaaaaaaagctcatcatcactggtcattagagaaatgcaaatcaaaaccacaatgagataccatctcacgccagttagaatggcgatcattaaaaagtcaggaaacaacagatgctggagaggatgtggagaaataggaacgcttttacactgttggtgggagtgtaaattagttcaaccattgtggaagacagtgtggcgattcctcaaggatctagaaccagaaataccatttgacccagcaatcccattactgggtatatacccaaaggattataaatcattctactataaagacacatgcacacgtatgtttattgcggcactgttcacaatagcaaagacttggaaccaacccaaatgcccatcaatgatagactggataaagaaaatgtggcacatatacaccatggaatactatgcagccataaaaaaggatgagttcatgtcctttgcagggacatggatgaagctggaaaccatcattctcagcaaactaacacaggaacagaaaaccaaacaccgcatgttctcactcataagtgggagttgaacaatgagaacacatggacacagggaggggaacatcacacaccggggcctgtcggggggtggggggctaggggagggatagcattaggagaaatacctaatgtagatgacgggttgatgggtgcagcaaaccaccatggcacgtgtatacctatgtaacaaacctgcacgttctgcacatgtatcccagaacttaaagtataataataaaaaaaaaa
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
...
Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF486 3322 8.6 Weakly correlated
2 ZNF84 949 99.0 Weakly correlated
3 ZNF382 914 99.0 Weakly correlated
4 ZNF490 707 43.0 Weakly correlated
5 ZNF248 664 99.0 Weakly correlated
6 ZNF92 458 28.9 Weakly correlated
7 ZNF17 410 69.0 Moderately correlated
8 ZNF317 386 99.0 Weakly correlated
9 ZNF479 318 6.4 Weakly correlated
10 ZNF679 304 28.9 Weakly correlated
11 ZNF141 214 43.0 Weakly correlated
12 ZIM3 188 87.0 Weakly correlated
13 ZNF425 123 94.0 Weakly correlated
14 ZNF136 113 74.0 Highly correlated
15 ZNF93 106 8.6 Weakly correlated
16 ZNF766 92 43.0 Weakly correlated
17 ZNF701 90 28.9 Weakly correlated
18 ZNF680 89 28.9 Weakly correlated
19 ZNF723 88 15.2 Weakly correlated
20 ZNF534 85 19.6 Weakly correlated
21 ZNF75D 73 94.0 Weakly correlated
22 ZNF528 58 43.0 Weakly correlated
23 ZNF558 57 99.0 Weakly correlated
24 ZNF85 57 28.9 Weakly correlated
25 ZNF394 56 99.0 Weakly correlated
26 ZFP57 52 87.0 Weakly correlated
27 ZNF793 49 99.0 Weakly correlated
28 ZNF251 46 94.0 Weakly correlated
29 ZFP90 45 99.0 Weakly correlated
30 ZNF8 44 99.0 Weakly correlated
31 ZNF2 40 99.0 Weakly correlated
32 ZNF705B 38 28.9 Weakly correlated
33 ZFP69B 37 99.0 Weakly correlated
34 ZNF18 37 160.0 Weakly correlated
35 ZNF324 35 99.0 Weakly correlated
36 ZNF263 34 180.0 Weakly correlated
37 ZNF182 32 99.0 Weakly correlated
38 ZNF589 29 28.9 Weakly correlated
39 ZNF175 28 94.0 Weakly correlated
40 ZNF519 27 19.6 Weakly correlated
41 ZNF554 27 99.0 Weakly correlated
42 ZNF584 27 99.0 Weakly correlated
43 ZKSCAN1 26 160.0 Weakly correlated
44 ZNF28 26 28.9 Weakly correlated
45 ZNF320 26 28.9 Weakly correlated
46 ZNF10 24 99.0 Weakly correlated
47 ZNF133 24 99.0 Weakly correlated
48 ZNF705D 24 28.9 Weakly correlated
49 ZNF585A 23 99.0 Weakly correlated
50 ZNF610 23 28.9 Weakly correlated
51 ZNF202 22 160.0 Weakly correlated
52 ZNF471 22 94.0 Weakly correlated
53 ZNF765 22 8.6 Weakly correlated
54 ZFP37 21 99.0 Weakly correlated
55 ZNF626 19 0.0 Weakly correlated
56 ZKSCAN8 18 160.0 Weakly correlated
57 ZNF101 18 43.0 Weakly correlated
58 ZNF485 18 94.0 Weakly correlated
59 ZNF597 18 94.0 Weakly correlated
60 ZNF649 17 28.9 Weakly correlated
61 ZNF197 14 99.0 Weakly correlated
62 ZNF274 14 99.0 Weakly correlated
63 ZNF331 14 94.0 Weakly correlated
64 ZNF354A 14 99.0 Weakly correlated
65 ZNF560 14 43.0 Weakly correlated
66 ZNF677 14 99.0 Weakly correlated
67 ZNF334 13 99.0 Weakly correlated
68 ZNF445 13 99.0 Weakly correlated
69 ZNF583 13 99.0 Weakly correlated
70 ZNF808 13 19.6 Weakly correlated
71 ZNF468 12 28.9 Weakly correlated
72 ZNF230 11 28.9 Weakly correlated
73 ZNF160 10 74.0 Highly correlated
74 ZNF257 10 0.0 Weakly correlated
75 ZNF506 10 28.9 Weakly correlated
76 ZNF778 10 74.0 Highly correlated
77 ZNF91 10 6.0 Weakly correlated
78 ZNF250 9 99.0 Weakly correlated
79 ZNF264 9 99.0 Weakly correlated
80 ZFP1 8 99.0 Weakly correlated
81 ZNF140 8 99.0 Weakly correlated
82 ZNF284 8 43.0 Weakly correlated
83 ZNF547 8 74.0 Highly correlated
84 ZNF735 8 28.9 Weakly correlated
85 ZNF786 8 99.0 Weakly correlated
86 ZNF429 7 28.9 Weakly correlated
87 ZNF441 7 43.0 Weakly correlated
88 ZNF585B 7 99.0 Weakly correlated
89 ZNF682 7 28.9 Weakly correlated
90 ZNF777 7 319.0 Weakly correlated
91 ZNF483 6 99.0 Weakly correlated
92 ZNF568 6 99.0 Weakly correlated
93 ZNF695 6 28.9 Weakly correlated
94 ZNF707 6 74.0 Highly correlated
95 ZNF287 5 99.0 Weakly correlated
96 ZNF33A 5 99.0 Weakly correlated
97 ZNF792 5 94.0 Weakly correlated
98 ZNF879 5 99.0 Weakly correlated
99 ZNF100 4 28.9 Weakly correlated
100 ZNF30 4 94.0 Weakly correlated
101 ZNF347 4 43.0 Weakly correlated
102 ZNF44 4 43.0 Weakly correlated
103 ZNF671 4 94.0 Weakly correlated
104 ZNF700 4 28.9 Weakly correlated
105 ZNF878 4 43.0 Weakly correlated
106 ZNF26 3 99.0 Weakly correlated
107 ZNF337 3 43.0 Weakly correlated
108 ZNF41 3 99.0 Weakly correlated
109 ZNF440 3 28.9 Weakly correlated
110 ZNF549 3 87.0 Weakly correlated
111 ZNF563 3 28.9 Weakly correlated
112 ZNF567 3 99.0 Weakly correlated
113 ZNF578 3 15.2 Weakly correlated
114 ZNF81 3 99.0 Weakly correlated
115 ZNF823 3 43.0 Weakly correlated
116 ZFP30 2 99.0 Weakly correlated
117 ZFP82 2 99.0 Weakly correlated
118 ZNF169 2 94.0 Weakly correlated
119 ZNF211 2 94.0 Weakly correlated
120 ZNF224 2 69.0 Moderately correlated
121 ZNF273 2 28.9 Weakly correlated
122 ZNF350 2 99.0 Weakly correlated
123 ZNF417 2 28.9 Weakly correlated
124 ZNF433 2 43.0 Weakly correlated
125 ZNF43 2 43.0 Weakly correlated
126 ZNF510 2 99.0 Weakly correlated
127 ZNF559 2 74.0 Highly correlated
128 ZNF611 2 19.6 Weakly correlated
129 ZNF630 2 94.0 Weakly correlated
130 ZNF674 2 99.0 Weakly correlated
131 ZNF7 2 99.0 Weakly correlated
132 ZNF816 2 28.9 Weakly correlated
133 ZFP28 1 99.0 Weakly correlated
134 ZIK1 1 87.0 Weakly correlated
135 ZKSCAN5 1 160.0 Weakly correlated
136 ZNF157 1 99.0 Weakly correlated
137 ZNF214 1 99.0 Weakly correlated
138 ZNF223 1 43.0 Weakly correlated
139 ZNF253 1 19.6 Weakly correlated
140 ZNF302 1 43.0 Weakly correlated
141 ZNF33B 1 99.0 Weakly correlated
142 ZNF343 1 74.0 Highly correlated
143 ZNF420 1 94.0 Weakly correlated
144 ZNF484 1 99.0 Weakly correlated
145 ZNF530 1 28.9 Weakly correlated
146 ZNF548 1 94.0 Weakly correlated
147 ZNF561 1 43.0 Weakly correlated
148 ZNF569 1 99.0 Weakly correlated
149 ZNF571 1 99.0 Weakly correlated
150 ZNF57 1 28.9 Weakly correlated
151 ZNF605 1 99.0 Weakly correlated
152 ZNF627 1 74.0 Highly correlated
153 ZNF641 1 99.0 Weakly correlated
154 ZNF665 1 28.9 Weakly correlated
155 ZNF675 1 8.6 Weakly correlated
156 ZNF716 1 19.6 Weakly correlated
157 ZNF726 1 28.9 Weakly correlated
158 ZNF736 1 43.0 Weakly correlated
159 ZNF749 1 28.9 Weakly correlated
160 ZNF763 1 15.2 Weakly correlated
161 ZNF77 1 87.0 Weakly correlated
162 ZNF780A 1 43.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF486 2453 8.6 Weakly correlated
2 ZNF84 901 99.0 Weakly correlated
3 ZNF490 682 43.0 Weakly correlated
4 ZNF248 647 99.0 Weakly correlated
5 ZNF17 405 69.0 Moderately correlated
6 ZNF92 376 28.9 Weakly correlated
7 ZNF479 251 6.4 Weakly correlated
8 ZNF382 236 99.0 Weakly correlated
9 ZNF141 198 43.0 Weakly correlated
10 ZNF317 147 99.0 Weakly correlated
11 ZIM3 143 87.0 Weakly correlated
12 ZNF425 115 94.0 Weakly correlated
13 ZNF93 98 8.6 Weakly correlated
14 ZNF136 90 74.0 Highly correlated
15 ZNF701 78 28.9 Weakly correlated
16 ZNF723 72 15.2 Weakly correlated
17 ZFP90 44 99.0 Weakly correlated
18 ZNF679 44 28.9 Weakly correlated
19 ZNF75D 41 94.0 Weakly correlated
20 ZNF534 38 19.6 Weakly correlated
21 ZNF8 37 99.0 Weakly correlated
22 ZNF680 35 28.9 Weakly correlated
23 ZNF85 34 28.9 Weakly correlated
24 ZFP57 30 87.0 Weakly correlated
25 ZNF793 24 99.0 Weakly correlated
26 ZNF10 22 99.0 Weakly correlated
27 ZNF558 22 99.0 Weakly correlated
28 ZNF626 18 0.0 Weakly correlated
29 ZNF202 17 160.0 Weakly correlated
30 ZNF649 17 28.9 Weakly correlated
31 ZNF765 17 8.6 Weakly correlated
32 ZFP69B 15 99.0 Weakly correlated
33 ZNF766 15 43.0 Weakly correlated
34 ZNF677 13 99.0 Weakly correlated
35 ZNF324 12 99.0 Weakly correlated
36 ZNF354A 12 99.0 Weakly correlated
37 ZNF597 11 94.0 Weakly correlated
38 ZNF18 11 160.0 Weakly correlated
39 ZNF251 10 94.0 Weakly correlated
40 ZNF263 10 180.0 Weakly correlated
41 ZNF468 10 28.9 Weakly correlated
42 ZNF101 8 43.0 Weakly correlated
43 ZNF250 8 99.0 Weakly correlated
44 ZNF485 8 94.0 Weakly correlated
45 ZFP1 7 99.0 Weakly correlated
46 ZNF585A 7 99.0 Weakly correlated
47 ZNF2 6 99.0 Weakly correlated
48 ZNF471 6 94.0 Weakly correlated
49 ZNF320 6 28.9 Weakly correlated
50 ZNF160 6 74.0 Highly correlated
51 ZNF528 6 43.0 Weakly correlated
52 ZNF735 5 28.9 Weakly correlated
53 ZNF394 5 99.0 Weakly correlated
54 ZNF264 5 99.0 Weakly correlated
55 ZNF506 5 28.9 Weakly correlated
56 ZNF140 4 99.0 Weakly correlated
57 ZNF28 4 28.9 Weakly correlated
58 ZNF589 4 28.9 Weakly correlated
59 ZNF682 4 28.9 Weakly correlated
60 ZNF287 4 99.0 Weakly correlated
61 ZNF257 4 0.0 Weakly correlated
62 ZNF560 4 43.0 Weakly correlated
63 ZNF584 4 99.0 Weakly correlated
64 ZNF133 3 99.0 Weakly correlated
65 ZNF44 3 43.0 Weakly correlated
66 ZNF879 3 99.0 Weakly correlated
67 ZNF230 3 28.9 Weakly correlated
68 ZNF483 3 99.0 Weakly correlated
69 ZNF347 3 43.0 Weakly correlated
70 ZNF705B 3 28.9 Weakly correlated
71 ZNF429 3 28.9 Weakly correlated
72 ZNF337 2 43.0 Weakly correlated
73 ZNF197 2 99.0 Weakly correlated
74 ZNF331 2 94.0 Weakly correlated
75 ZNF695 2 28.9 Weakly correlated
76 ZNF274 2 99.0 Weakly correlated
77 ZNF707 2 74.0 Highly correlated
78 ZNF81 2 99.0 Weakly correlated
79 ZFP37 1 99.0 Weakly correlated
80 ZKSCAN5 1 160.0 Weakly correlated
81 ZNF175 1 94.0 Weakly correlated
82 ZNF440 1 28.9 Weakly correlated
83 ZNF585B 1 99.0 Weakly correlated
84 ZNF91 1 6.0 Weakly correlated
85 ZNF441 1 43.0 Weakly correlated
86 ZNF530 1 28.9 Weakly correlated
87 ZNF674 1 99.0 Weakly correlated
88 ZNF749 1 28.9 Weakly correlated
89 ZNF211 1 94.0 Weakly correlated
90 ZNF563 1 28.9 Weakly correlated
91 ZNF786 1 99.0 Weakly correlated
92 ZNF284 1 43.0 Weakly correlated
93 ZNF33B 1 99.0 Weakly correlated
94 ZNF484 1 99.0 Weakly correlated
95 ZNF549 1 87.0 Weakly correlated
96 ZNF583 1 99.0 Weakly correlated
97 ZNF878 1 43.0 Weakly correlated
98 ZNF334 1 99.0 Weakly correlated
99 ZNF519 1 19.6 Weakly correlated
100 ZNF610 1 28.9 Weakly correlated
101 ZNF33A 1 99.0 Weakly correlated
102 ZNF780A 1 43.0 Weakly correlated
103 ZIK1 1 87.0 Weakly correlated
104 ZNF26 1 99.0 Weakly correlated
105 ZNF554 1 99.0 Weakly correlated
106 ZNF561 1 43.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZFP1 99.0 Weakly correlated
2 ZFP57 87.0 Weakly correlated
3 ZNF141 43.0 Weakly correlated
4 ZNF18 160.0 Weakly correlated
5 ZNF248 99.0 Weakly correlated
6 ZNF263 180.0 Weakly correlated
7 ZNF317 99.0 Weakly correlated
8 ZNF320 28.9 Weakly correlated
9 ZNF324 99.0 Weakly correlated
10 ZNF486 8.6 Weakly correlated
11 ZNF597 94.0 Weakly correlated
12 ZNF626 0.0 Weakly correlated
13 ZNF680 28.9 Weakly correlated
14 ZNF701 28.9 Weakly correlated
15 ZNF723 15.2 Weakly correlated
16 ZNF75D 94.0 Weakly correlated
17 ZNF84 99.0 Weakly correlated
18 ZNF92 28.9 Weakly correlated