ZRdb KZFP & Repeats
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LINE_L1PA6_3END

  • Name
    L1PA6_3END
  • Repbase
    L1PA6
  • Type
    LINE
  • Emergence
    28.9 Mya
  • Dfam Id
    DF0000343
Description :

ORF2 ends at bp ~684
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
ctaatatccagaatctacaaagaacttaaacaaatttacaagaaaaaaacaaacaaccccatcaaaaagtgggcaaaggatatgaacagacacttctcaaaagaagacatttatgcagccaacagacacatgaaaaaatgctcatcatcactggtcatcagagaaatgcaaatcaaaaccacaatgagataccatctcacgccagttagaatggcgatcattaaaaagtcaggaaacaacagatgctggagaggatgtggagaaataggaacgcttttacactgttggtgggagtgtaaactagttcaaccattgtggaagacagtgtggcgattcctcaaggatctagaactagaaataccatttgacccagcgatcccattactgggtatatacccaaaggattataaatcatgctactataaagacacatgcacacgtatgtttattgcggcactattcacaatagcaaagacttggaaccaacccaaatgtccatcaatgatagactggattaagaaaatgtggcacatatacaccatggaatactatgcagccataaaaaaggatgagttcatgtcctttgcagggacatggatgaagctggaaaccatcattctcagcaaactatcacaaggacagaaaaccaaacaccgcatgttctcactcataggtgggaattgaacaatgagaacacttggacacagggcggggaacatcacacaccggggcctgtcgtggggtggggggctgggggagggatagcattaggagaaatacctaatgtaaatgacgagttgatgggtgcagcaaaccaacatggcacatgtatacctatgtaacaaacctgcacgttgtgcacatgtaccctagaacttaaagtataataaaaaaaaaaaaa
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF486 2004 8.6 Weakly correlated
2 ZNF382 1662 99.0 Weakly correlated
3 ZNF490 467 43.0 Weakly correlated
4 ZNF765 462 8.6 Weakly correlated
5 ZNF84 458 99.0 Weakly correlated
6 ZNF248 386 99.0 Weakly correlated
7 ZNF93 273 8.6 Weakly correlated
8 ZNF649 244 28.9 Highly correlated
9 ZNF317 224 99.0 Weakly correlated
10 ZIM3 215 87.0 Weakly correlated
11 ZNF534 200 19.6 Moderately correlated
12 ZNF141 163 43.0 Weakly correlated
13 ZNF679 162 28.9 Highly correlated
14 ZNF92 111 28.9 Highly correlated
15 ZNF425 100 94.0 Weakly correlated
16 ZNF136 90 74.0 Weakly correlated
17 ZNF766 80 43.0 Weakly correlated
18 ZNF251 72 94.0 Weakly correlated
19 ZNF701 56 28.9 Highly correlated
20 ZNF394 49 99.0 Weakly correlated
21 ZNF18 42 160.0 Weakly correlated
22 ZNF75D 40 94.0 Weakly correlated
23 ZNF528 39 43.0 Weakly correlated
24 ZFP57 37 87.0 Weakly correlated
25 ZFP69B 37 99.0 Weakly correlated
26 ZNF554 37 99.0 Weakly correlated
27 ZNF2 36 99.0 Weakly correlated
28 ZNF793 35 99.0 Weakly correlated
29 ZNF589 30 28.9 Highly correlated
30 ZNF324 29 99.0 Weakly correlated
31 ZNF558 26 99.0 Weakly correlated
32 ZNF560 26 43.0 Weakly correlated
33 ZNF723 25 15.2 Moderately correlated
34 ZNF85 24 28.9 Highly correlated
35 ZNF28 23 28.9 Highly correlated
36 ZNF479 22 6.4 Weakly correlated
37 ZNF547 22 74.0 Weakly correlated
38 ZNF680 22 28.9 Highly correlated
39 ZNF705B 22 28.9 Highly correlated
40 ZNF263 20 180.0 Weakly correlated
41 ZNF8 20 99.0 Weakly correlated
42 ZNF182 19 99.0 Weakly correlated
43 ZNF101 18 43.0 Weakly correlated
44 ZNF519 17 19.6 Moderately correlated
45 ZNF610 17 28.9 Highly correlated
46 ZNF705D 17 28.9 Highly correlated
47 ZNF175 16 94.0 Weakly correlated
48 ZFP37 15 99.0 Weakly correlated
49 ZKSCAN1 13 160.0 Weakly correlated
50 ZKSCAN8 13 160.0 Weakly correlated
51 ZNF10 13 99.0 Weakly correlated
52 ZNF197 13 99.0 Weakly correlated
53 ZNF584 13 99.0 Weakly correlated
54 ZNF202 12 160.0 Weakly correlated
55 ZNF274 12 99.0 Weakly correlated
56 ZNF133 11 99.0 Weakly correlated
57 ZNF471 11 94.0 Weakly correlated
58 ZNF331 10 94.0 Weakly correlated
59 ZNF585A 10 99.0 Weakly correlated
60 ZNF585B 9 99.0 Weakly correlated
61 ZNF429 8 28.9 Highly correlated
62 ZNF160 7 74.0 Weakly correlated
63 ZNF17 7 69.0 Weakly correlated
64 ZNF445 7 99.0 Weakly correlated
65 ZNF320 6 28.9 Highly correlated
66 ZNF354A 6 99.0 Weakly correlated
67 ZNF441 6 43.0 Weakly correlated
68 ZNF483 6 99.0 Weakly correlated
69 ZNF485 6 94.0 Weakly correlated
70 ZNF671 6 94.0 Weakly correlated
71 ZNF735 6 28.9 Highly correlated
72 ZNF257 5 0.0 Weakly correlated
73 ZNF506 5 28.9 Highly correlated
74 ZNF677 5 99.0 Weakly correlated
75 ZNF695 5 28.9 Highly correlated
76 ZNF786 5 99.0 Weakly correlated
77 ZNF846 5 74.0 Weakly correlated
78 ZNF140 4 99.0 Weakly correlated
79 ZNF44 4 43.0 Weakly correlated
80 ZNF549 4 87.0 Weakly correlated
81 ZNF583 4 99.0 Weakly correlated
82 ZNF626 4 0.0 Weakly correlated
83 ZNF707 4 74.0 Weakly correlated
84 ZNF287 3 99.0 Weakly correlated
85 ZNF682 3 28.9 Highly correlated
86 ZNF75A 3 94.0 Weakly correlated
87 ZNF808 3 19.6 Moderately correlated
88 RBAK 2 99.0 Weakly correlated
89 ZFP28 2 99.0 Weakly correlated
90 ZFP90 2 99.0 Weakly correlated
91 ZNF114 2 28.9 Highly correlated
92 ZNF224 2 69.0 Weakly correlated
93 ZNF273 2 28.9 Highly correlated
94 ZNF337 2 43.0 Weakly correlated
95 ZNF350 2 99.0 Weakly correlated
96 ZNF41 2 99.0 Weakly correlated
97 ZNF468 2 28.9 Highly correlated
98 ZNF567 2 99.0 Weakly correlated
99 ZNF573 2 94.0 Weakly correlated
100 ZNF777 2 319.0 Weakly correlated
101 ZNF823 2 43.0 Weakly correlated
102 ZNF879 2 99.0 Weakly correlated
103 ZFP1 1 99.0 Weakly correlated
104 ZFP69 1 99.0 Weakly correlated
105 ZNF135 1 94.0 Weakly correlated
106 ZNF157 1 99.0 Weakly correlated
107 ZNF189 1 99.0 Weakly correlated
108 ZNF19 1 99.0 Weakly correlated
109 ZNF222 1 43.0 Weakly correlated
110 ZNF230 1 28.9 Highly correlated
111 ZNF264 1 99.0 Weakly correlated
112 ZNF282 1 319.0 Weakly correlated
113 ZNF284 1 43.0 Weakly correlated
114 ZNF334 1 99.0 Weakly correlated
115 ZNF33A 1 99.0 Weakly correlated
116 ZNF33B 1 99.0 Weakly correlated
117 ZNF343 1 74.0 Weakly correlated
118 ZNF432 1 99.0 Weakly correlated
119 ZNF440 1 28.9 Highly correlated
120 ZNF555 1 94.0 Weakly correlated
121 ZNF559 1 74.0 Weakly correlated
122 ZNF563 1 28.9 Highly correlated
123 ZNF565 1 99.0 Weakly correlated
124 ZNF569 1 99.0 Weakly correlated
125 ZNF586 1 43.0 Weakly correlated
126 ZNF587 1 28.9 Highly correlated
127 ZNF641 1 99.0 Weakly correlated
128 ZNF66 1 0.0 Weakly correlated
129 ZNF675 1 8.6 Weakly correlated
130 ZNF700 1 28.9 Highly correlated
131 ZNF736 1 43.0 Weakly correlated
132 ZNF763 1 15.2 Moderately correlated
133 ZNF778 1 74.0 Weakly correlated
134 ZNF792 1 94.0 Weakly correlated
135 ZNF813 1 28.9 Highly correlated
136 ZNF81 1 99.0 Weakly correlated
137 ZNF850 1 28.9 Highly correlated
138 ZNF878 1 43.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF486 1418 8.6 Weakly correlated
2 ZNF490 458 43.0 Weakly correlated
3 ZNF382 447 99.0 Weakly correlated
4 ZNF765 435 8.6 Weakly correlated
5 ZNF84 427 99.0 Weakly correlated
6 ZNF248 380 99.0 Weakly correlated
7 ZNF93 258 8.6 Weakly correlated
8 ZNF649 239 28.9 Highly correlated
9 ZIM3 169 87.0 Weakly correlated
10 ZNF534 167 19.6 Moderately correlated
11 ZNF141 155 43.0 Weakly correlated
12 ZNF317 109 99.0 Weakly correlated
13 ZNF425 92 94.0 Weakly correlated
14 ZNF92 76 28.9 Highly correlated
15 ZNF136 58 74.0 Weakly correlated
16 ZNF701 46 28.9 Highly correlated
17 ZNF75D 25 94.0 Weakly correlated
18 ZNF251 19 94.0 Weakly correlated
19 ZNF18 17 160.0 Weakly correlated
20 ZNF723 16 15.2 Moderately correlated
21 ZFP57 15 87.0 Weakly correlated
22 ZNF85 13 28.9 Highly correlated
23 ZNF324 13 99.0 Weakly correlated
24 ZNF8 13 99.0 Weakly correlated
25 ZNF101 12 43.0 Weakly correlated
26 ZNF10 12 99.0 Weakly correlated
27 ZNF793 12 99.0 Weakly correlated
28 ZFP69B 10 99.0 Weakly correlated
29 ZNF202 10 160.0 Weakly correlated
30 ZNF680 9 28.9 Highly correlated
31 ZNF479 9 6.4 Weakly correlated
32 ZNF558 7 99.0 Weakly correlated
33 ZNF263 7 180.0 Weakly correlated
34 ZNF679 6 28.9 Highly correlated
35 ZNF17 6 69.0 Weakly correlated
36 ZNF2 5 99.0 Weakly correlated
37 ZNF677 5 99.0 Weakly correlated
38 ZNF766 4 43.0 Weakly correlated
39 ZNF560 4 43.0 Weakly correlated
40 ZNF528 4 43.0 Weakly correlated
41 ZNF354A 4 99.0 Weakly correlated
42 ZNF846 4 74.0 Weakly correlated
43 ZNF735 4 28.9 Highly correlated
44 ZNF585A 4 99.0 Weakly correlated
45 ZNF133 4 99.0 Weakly correlated
46 ZNF28 4 28.9 Highly correlated
47 ZNF705D 3 28.9 Highly correlated
48 ZNF589 3 28.9 Highly correlated
49 ZNF549 3 87.0 Weakly correlated
50 ZNF610 3 28.9 Highly correlated
51 ZNF140 3 99.0 Weakly correlated
52 ZNF682 3 28.9 Highly correlated
53 ZNF705B 3 28.9 Highly correlated
54 ZNF626 3 0.0 Weakly correlated
55 ZNF394 3 99.0 Weakly correlated
56 ZNF160 2 74.0 Weakly correlated
57 ZNF671 2 94.0 Weakly correlated
58 ZFP90 2 99.0 Weakly correlated
59 ZNF707 2 74.0 Weakly correlated
60 ZNF786 2 99.0 Weakly correlated
61 ZNF287 2 99.0 Weakly correlated
62 ZNF695 2 28.9 Highly correlated
63 ZNF429 2 28.9 Highly correlated
64 ZNF44 2 43.0 Weakly correlated
65 ZNF554 2 99.0 Weakly correlated
66 ZNF585B 2 99.0 Weakly correlated
67 ZNF197 1 99.0 Weakly correlated
68 ZNF320 1 28.9 Highly correlated
69 ZNF81 1 99.0 Weakly correlated
70 ZFP1 1 99.0 Weakly correlated
71 ZNF282 1 319.0 Weakly correlated
72 ZNF506 1 28.9 Highly correlated
73 ZNF334 1 99.0 Weakly correlated
74 ZNF641 1 99.0 Weakly correlated
75 ZNF519 1 19.6 Moderately correlated
76 ZNF468 1 28.9 Highly correlated
77 ZNF350 1 99.0 Weakly correlated
78 ZNF337 1 43.0 Weakly correlated
79 ZNF331 1 94.0 Weakly correlated
80 ZNF483 1 99.0 Weakly correlated
81 ZNF485 1 94.0 Weakly correlated
82 ZNF573 1 94.0 Weakly correlated
83 ZNF257 1 0.0 Weakly correlated
84 ZNF75A 1 94.0 Weakly correlated
85 ZNF565 1 99.0 Weakly correlated
86 ZNF471 1 94.0 Weakly correlated
87 ZNF675 1 8.6 Weakly correlated
88 ZNF175 1 94.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZFP57 87.0 Weakly correlated
2 ZNF248 99.0 Weakly correlated
3 ZNF251 94.0 Weakly correlated
4 ZNF317 99.0 Weakly correlated
5 ZNF486 8.6 Weakly correlated
6 ZNF680 28.9 Highly correlated
7 ZNF701 28.9 Highly correlated
8 ZNF75D 94.0 Weakly correlated
9 ZNF84 99.0 Weakly correlated
10 ZNF92 28.9 Highly correlated