ZRdb KZFP & Repeats
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LINE_L1PA5_3END

  • Name
    L1PA5_3END
  • Repbase
    L1PA5
  • Type
    LINE
  • Emergence
    19.6 Mya
  • Dfam Id
    DF0000342
Description :

ORF2 ends at bp ~684
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
ctaatatccagaatctacaaagaactcaaacaaatttacaagaaaaaaacaaacaaccccatcaaaaagtgggcgaaggatatgaacagacacttctcaaaagaagacatttatgcagccaacagacacatgaaaaaatgctcatcatcactggccatcagagaaatgcaaatcaaaaccacaatgagataccatctcacaccagttagaatggcgatcattaaaaagtcaggaaacaacaggtgctggagaggatgtggagaaataggaacacttttacactgttggtgggactgtaaactagttcaaccattgtggaagacagtgtggcgattcctcaaggatctagaactagaaataccatttgacccagccatcccattactgggtatatacccaaaggattataaatcatgctgctataaagacacatgcacacgtatgtttattgcggcactattcacaatagcaaagacttggaaccaacccaaatgtccatcaatgatagactggattaagaaaatgtggcacatatacaccatggaatactatgcagccataaaaaaggatgagttcatgtcctttgtagggacatggatgaagctggaaaccatcattctcagcaaactatcgcaaggacaaaaaaccaaacaccgcatgttctcactcataggtgggaattgaacaatgagaacacttggacacaggaaggggaacatcacacaccggggcctgtcgtggggtggggggaggggggagggatagcattaggagatatacctaatgtaaatgacgagttaatgggtgcagcacaccaacatggcacatgtatacatatgtaacaaacctgcacgttgtgcacatgtaccctagaacttaaagtataataaaaaaaaaaaaa
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF486 3467 8.6 Moderately correlated
2 ZNF382 2075 99.0 Weakly correlated
3 ZNF765 788 8.6 Moderately correlated
4 ZNF649 683 28.9 Weakly correlated
5 ZNF84 662 99.0 Weakly correlated
6 ZNF248 524 99.0 Weakly correlated
7 ZNF490 387 43.0 Weakly correlated
8 ZNF93 342 8.6 Moderately correlated
9 ZNF317 231 99.0 Weakly correlated
10 ZNF679 221 28.9 Weakly correlated
11 ZNF141 159 43.0 Weakly correlated
12 ZNF425 114 94.0 Weakly correlated
13 ZNF528 112 43.0 Weakly correlated
14 ZFP57 109 87.0 Weakly correlated
15 ZIM3 109 87.0 Weakly correlated
16 ZNF136 109 74.0 Weakly correlated
17 ZNF251 102 94.0 Weakly correlated
18 ZNF766 101 43.0 Weakly correlated
19 ZNF394 97 99.0 Weakly correlated
20 ZNF92 97 28.9 Weakly correlated
21 ZNF534 83 19.6 Highly correlated
22 ZNF18 78 160.0 Weakly correlated
23 ZNF2 71 99.0 Weakly correlated
24 ZNF479 70 6.4 Moderately correlated
25 ZNF793 65 99.0 Weakly correlated
26 ZNF705B 61 28.9 Weakly correlated
27 ZNF560 57 43.0 Weakly correlated
28 ZNF680 54 28.9 Weakly correlated
29 ZNF75D 44 94.0 Weakly correlated
30 ZFP37 40 99.0 Weakly correlated
31 ZNF558 40 99.0 Weakly correlated
32 ZNF101 38 43.0 Weakly correlated
33 ZNF202 38 160.0 Weakly correlated
34 ZNF723 37 15.2 Moderately correlated
35 ZFP69B 36 99.0 Weakly correlated
36 ZNF705D 32 28.9 Weakly correlated
37 ZNF85 31 28.9 Weakly correlated
38 ZNF17 30 69.0 Weakly correlated
39 ZNF519 27 19.6 Highly correlated
40 ZNF324 26 99.0 Weakly correlated
41 ZNF133 24 99.0 Weakly correlated
42 ZNF182 23 99.0 Weakly correlated
43 ZNF10 22 99.0 Weakly correlated
44 ZNF140 22 99.0 Weakly correlated
45 ZNF175 22 94.0 Weakly correlated
46 ZNF28 21 28.9 Weakly correlated
47 ZNF354A 21 99.0 Weakly correlated
48 ZNF610 21 28.9 Weakly correlated
49 ZNF471 20 94.0 Weakly correlated
50 ZNF547 20 74.0 Weakly correlated
51 ZKSCAN1 19 160.0 Weakly correlated
52 ZNF160 19 74.0 Weakly correlated
53 ZNF585A 17 99.0 Weakly correlated
54 ZNF8 17 99.0 Weakly correlated
55 ZNF792 16 94.0 Weakly correlated
56 ZNF808 15 19.6 Highly correlated
57 ZNF445 14 99.0 Weakly correlated
58 ZKSCAN8 13 160.0 Weakly correlated
59 ZNF263 13 180.0 Weakly correlated
60 ZNF554 13 99.0 Weakly correlated
61 ZNF682 13 28.9 Weakly correlated
62 ZNF701 13 28.9 Weakly correlated
63 ZNF264 12 99.0 Weakly correlated
64 ZNF485 12 94.0 Weakly correlated
65 ZNF506 12 28.9 Weakly correlated
66 ZNF549 12 87.0 Weakly correlated
67 ZNF100 11 28.9 Weakly correlated
68 ZNF589 11 28.9 Weakly correlated
69 ZNF786 11 99.0 Weakly correlated
70 ZNF197 10 99.0 Weakly correlated
71 ZNF707 10 74.0 Weakly correlated
72 ZNF274 9 99.0 Weakly correlated
73 ZNF584 9 99.0 Weakly correlated
74 ZNF585B 9 99.0 Weakly correlated
75 ZNF671 9 94.0 Weakly correlated
76 ZNF334 8 99.0 Weakly correlated
77 ZNF419 8 28.9 Weakly correlated
78 ZNF429 8 28.9 Weakly correlated
79 ZNF169 7 94.0 Weakly correlated
80 ZNF257 7 0.0 Weakly correlated
81 ZNF287 7 99.0 Weakly correlated
82 ZNF320 7 28.9 Weakly correlated
83 ZNF626 7 0.0 Weakly correlated
84 ZNF735 7 28.9 Weakly correlated
85 ZKSCAN4 6 99.0 Weakly correlated
86 ZNF337 6 43.0 Weakly correlated
87 ZNF418 6 43.0 Weakly correlated
88 ZNF441 6 43.0 Weakly correlated
89 ZNF561 6 43.0 Weakly correlated
90 ZNF582 6 99.0 Weakly correlated
91 ZNF587 6 28.9 Weakly correlated
92 ZNF616 6 43.0 Weakly correlated
93 ZNF674 6 99.0 Weakly correlated
94 ZNF777 6 319.0 Weakly correlated
95 ZNF81 6 99.0 Weakly correlated
96 ZNF823 6 43.0 Weakly correlated
97 ZFP69 5 99.0 Weakly correlated
98 ZFP90 5 99.0 Weakly correlated
99 ZNF211 5 94.0 Weakly correlated
100 ZNF250 5 99.0 Weakly correlated
101 ZNF282 5 319.0 Weakly correlated
102 ZNF284 5 43.0 Weakly correlated
103 ZNF304 5 99.0 Weakly correlated
104 ZNF343 5 74.0 Weakly correlated
105 ZNF398 5 99.0 Weakly correlated
106 ZNF480 5 43.0 Weakly correlated
107 ZNF484 5 99.0 Weakly correlated
108 ZNF530 5 28.9 Weakly correlated
109 ZNF555 5 94.0 Weakly correlated
110 ZNF605 5 99.0 Weakly correlated
111 ZNF641 5 99.0 Weakly correlated
112 ZNF695 5 28.9 Weakly correlated
113 ZNF778 5 74.0 Weakly correlated
114 ZNF846 5 74.0 Weakly correlated
115 ZKSCAN5 4 160.0 Weakly correlated
116 ZNF124 4 43.0 Weakly correlated
117 ZNF14 4 69.0 Weakly correlated
118 ZNF157 4 99.0 Weakly correlated
119 ZNF181 4 94.0 Weakly correlated
120 ZNF223 4 43.0 Weakly correlated
121 ZNF225 4 74.0 Weakly correlated
122 ZNF234 4 99.0 Weakly correlated
123 ZNF273 4 28.9 Weakly correlated
124 ZNF30 4 94.0 Weakly correlated
125 ZNF331 4 94.0 Weakly correlated
126 ZNF354C 4 99.0 Weakly correlated
127 ZNF383 4 99.0 Weakly correlated
128 ZNF430 4 19.6 Highly correlated
129 ZNF442 4 43.0 Weakly correlated
130 ZNF454 4 99.0 Weakly correlated
131 ZNF483 4 99.0 Weakly correlated
132 ZNF543 4 99.0 Weakly correlated
133 ZNF544 4 0.0 Weakly correlated
134 ZNF583 4 99.0 Weakly correlated
135 ZNF613 4 99.0 Weakly correlated
136 ZNF74 4 99.0 Weakly correlated
137 ZNF780A 4 43.0 Weakly correlated
138 ZNF789 4 99.0 Weakly correlated
139 ZNF799 4 43.0 Weakly correlated
140 ZNF879 4 99.0 Weakly correlated
141 ZNF880 4 28.9 Weakly correlated
142 ZFP28 3 99.0 Weakly correlated
143 ZKSCAN3 3 99.0 Weakly correlated
144 ZNF114 3 28.9 Weakly correlated
145 ZNF180 3 99.0 Weakly correlated
146 ZNF19 3 99.0 Weakly correlated
147 ZNF214 3 99.0 Weakly correlated
148 ZNF224 3 69.0 Weakly correlated
149 ZNF230 3 28.9 Weakly correlated
150 ZNF254 3 43.0 Weakly correlated
151 ZNF256 3 74.0 Weakly correlated
152 ZNF302 3 43.0 Weakly correlated
153 ZNF33A 3 99.0 Weakly correlated
154 ZNF417 3 28.9 Weakly correlated
155 ZNF432 3 99.0 Weakly correlated
156 ZNF439 3 8.6 Moderately correlated
157 ZNF44 3 43.0 Weakly correlated
158 ZNF45 3 99.0 Weakly correlated
159 ZNF529 3 99.0 Weakly correlated
160 ZNF557 3 15.2 Moderately correlated
161 ZNF567 3 99.0 Weakly correlated
162 ZNF578 3 15.2 Moderately correlated
163 ZNF599 3 99.0 Weakly correlated
164 ZNF614 3 99.0 Weakly correlated
165 ZNF615 3 99.0 Weakly correlated
166 ZNF667 3 99.0 Weakly correlated
167 ZNF675 3 8.6 Moderately correlated
168 ZNF677 3 99.0 Weakly correlated
169 ZNF688 3 160.0 Weakly correlated
170 ZNF700 3 28.9 Weakly correlated
171 ZNF705G 3 28.9 Weakly correlated
172 ZNF716 3 19.6 Highly correlated
173 ZNF730 3 19.6 Highly correlated
174 ZNF749 3 28.9 Weakly correlated
175 ZNF764 3 160.0 Weakly correlated
176 ZNF805 3 99.0 Weakly correlated
177 ZNF813 3 28.9 Weakly correlated
178 ZNF816 3 28.9 Weakly correlated
179 ZNF850 3 28.9 Weakly correlated
180 ZNF878 3 43.0 Weakly correlated
181 ZFP1 2 99.0 Weakly correlated
182 ZFP30 2 99.0 Weakly correlated
183 ZFP92 2 99.0 Weakly correlated
184 ZIK1 2 87.0 Weakly correlated
185 ZKSCAN2 2 180.0 Weakly correlated
186 ZNF12 2 99.0 Weakly correlated
187 ZNF132 2 94.0 Weakly correlated
188 ZNF135 2 94.0 Weakly correlated
189 ZNF177 2 94.0 Weakly correlated
190 ZNF184 2 99.0 Weakly correlated
191 ZNF189 2 99.0 Weakly correlated
192 ZNF212 2 160.0 Weakly correlated
193 ZNF222 2 43.0 Weakly correlated
194 ZNF235 2 99.0 Weakly correlated
195 ZNF253 2 19.6 Highly correlated
196 ZNF267 2 43.0 Weakly correlated
197 ZNF26 2 99.0 Weakly correlated
198 ZNF300 2 99.0 Weakly correlated
199 ZNF311 2 99.0 Weakly correlated
200 ZNF333 2 99.0 Weakly correlated
201 ZNF354B 2 99.0 Weakly correlated
202 ZNF416 2 43.0 Weakly correlated
203 ZNF420 2 94.0 Weakly correlated
204 ZNF431 2 28.9 Weakly correlated
205 ZNF433 2 43.0 Weakly correlated
206 ZNF440 2 28.9 Weakly correlated
207 ZNF496 2 99.0 Weakly correlated
208 ZNF510 2 99.0 Weakly correlated
209 ZNF514 2 94.0 Weakly correlated
210 ZNF525 2 19.6 Highly correlated
211 ZNF527 2 99.0 Weakly correlated
212 ZNF540 2 87.0 Weakly correlated
213 ZNF548 2 94.0 Weakly correlated
214 ZNF550 2 94.0 Weakly correlated
215 ZNF552 2 28.9 Weakly correlated
216 ZNF559 2 74.0 Weakly correlated
217 ZNF562 2 28.9 Weakly correlated
218 ZNF565 2 99.0 Weakly correlated
219 ZNF566 2 99.0 Weakly correlated
220 ZNF568 2 99.0 Weakly correlated
221 ZNF573 2 94.0 Weakly correlated
222 ZNF587B 2 8.6 Moderately correlated
223 ZNF620 2 99.0 Weakly correlated
224 ZNF627 2 74.0 Weakly correlated
225 ZNF658 2 99.0 Weakly correlated
226 ZNF681 2 28.9 Weakly correlated
227 ZNF684 2 99.0 Weakly correlated
228 ZNF69 2 28.9 Weakly correlated
229 ZNF717 2 0.0 Weakly correlated
230 ZNF718 2 19.6 Highly correlated
231 ZNF726 2 28.9 Weakly correlated
232 ZNF727 2 19.6 Highly correlated
233 ZNF728 2 19.6 Highly correlated
234 ZNF729 2 8.6 Moderately correlated
235 ZNF747 2 43.0 Weakly correlated
236 ZNF761 2 19.6 Highly correlated
237 ZNF763 2 15.2 Moderately correlated
238 ZNF776 2 43.0 Weakly correlated
239 ZNF77 2 87.0 Weakly correlated
240 ZNF790 2 99.0 Weakly correlated
241 ZNF791 2 87.0 Weakly correlated
242 ZNF7 2 99.0 Weakly correlated
243 ZNF829 2 99.0 Weakly correlated
244 ZNF845 2 28.9 Weakly correlated
245 ZNF852 2 94.0 Weakly correlated
246 ZNF860 2 0.0 Weakly correlated
247 RBAK 1 99.0 Weakly correlated
248 ZFP14 1 99.0 Weakly correlated
249 ZIM2 1 0.0 Weakly correlated
250 ZNF154 1 94.0 Weakly correlated
251 ZNF195 1 28.9 Weakly correlated
252 ZNF205 1 180.0 Weakly correlated
253 ZNF20 1 43.0 Weakly correlated
254 ZNF215 1 99.0 Weakly correlated
255 ZNF233 1 99.0 Weakly correlated
256 ZNF283 1 99.0 Weakly correlated
257 ZNF285 1 94.0 Weakly correlated
258 ZNF324B 1 99.0 Weakly correlated
259 ZNF33B 1 99.0 Weakly correlated
260 ZNF347 1 43.0 Weakly correlated
261 ZNF350 1 99.0 Weakly correlated
262 ZNF3 1 160.0 Weakly correlated
263 ZNF41 1 99.0 Weakly correlated
264 ZNF426 1 87.0 Weakly correlated
265 ZNF43 1 43.0 Weakly correlated
266 ZNF446 1 94.0 Weakly correlated
267 ZNF460 1 74.0 Weakly correlated
268 ZNF461 1 99.0 Weakly correlated
269 ZNF468 1 28.9 Weakly correlated
270 ZNF487 1 28.9 Weakly correlated
271 ZNF500 1 160.0 Weakly correlated
272 ZNF551 1 94.0 Weakly correlated
273 ZNF556 1 94.0 Weakly correlated
274 ZNF564 1 74.0 Weakly correlated
275 ZNF570 1 99.0 Weakly correlated
276 ZNF571 1 99.0 Weakly correlated
277 ZNF586 1 43.0 Weakly correlated
278 ZNF607 1 43.0 Weakly correlated
279 ZNF611 1 19.6 Highly correlated
280 ZNF624 1 99.0 Weakly correlated
281 ZNF669 1 43.0 Weakly correlated
282 ZNF66 1 0.0 Weakly correlated
283 ZNF699 1 99.0 Weakly correlated
284 ZNF705E 1 0.0 Weakly correlated
285 ZNF736 1 43.0 Weakly correlated
286 ZNF746 1 99.0 Weakly correlated
287 ZNF75A 1 94.0 Weakly correlated
288 ZNF782 1 99.0 Weakly correlated
289 ZNF785 1 94.0 Weakly correlated
290 ZNF814 1 0.0 Weakly correlated
291 ZNF891 1 99.0 Weakly correlated
292 ZNF90 1 8.6 Moderately correlated
293 ZNF91 1 6.0 Moderately correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF486 2431 8.6 Moderately correlated
2 ZNF765 723 8.6 Moderately correlated
3 ZNF649 680 28.9 Weakly correlated
4 ZNF382 612 99.0 Weakly correlated
5 ZNF84 592 99.0 Weakly correlated
6 ZNF248 483 99.0 Weakly correlated
7 ZNF490 371 43.0 Weakly correlated
8 ZNF93 324 8.6 Moderately correlated
9 ZNF141 145 43.0 Weakly correlated
10 ZNF425 108 94.0 Weakly correlated
11 ZNF317 92 99.0 Weakly correlated
12 ZNF92 72 28.9 Weakly correlated
13 ZIM3 65 87.0 Weakly correlated
14 ZNF534 60 19.6 Highly correlated
15 ZFP57 47 87.0 Weakly correlated
16 ZNF136 38 74.0 Weakly correlated
17 ZNF18 33 160.0 Weakly correlated
18 ZNF766 31 43.0 Weakly correlated
19 ZNF202 27 160.0 Weakly correlated
20 ZNF251 26 94.0 Weakly correlated
21 ZNF101 24 43.0 Weakly correlated
22 ZNF75D 21 94.0 Weakly correlated
23 ZNF10 20 99.0 Weakly correlated
24 ZNF679 20 28.9 Weakly correlated
25 ZNF528 20 43.0 Weakly correlated
26 ZNF723 19 15.2 Moderately correlated
27 ZNF85 19 28.9 Weakly correlated
28 ZNF793 18 99.0 Weakly correlated
29 ZNF17 17 69.0 Weakly correlated
30 ZNF28 13 28.9 Weakly correlated
31 ZNF394 13 99.0 Weakly correlated
32 ZNF140 12 99.0 Weakly correlated
33 ZNF558 11 99.0 Weakly correlated
34 ZNF354A 11 99.0 Weakly correlated
35 ZNF701 11 28.9 Weakly correlated
36 ZNF160 10 74.0 Weakly correlated
37 ZNF560 9 43.0 Weakly correlated
38 ZNF479 9 6.4 Moderately correlated
39 ZNF680 8 28.9 Weakly correlated
40 ZNF324 8 99.0 Weakly correlated
41 ZNF133 6 99.0 Weakly correlated
42 ZNF8 6 99.0 Weakly correlated
43 ZNF626 6 0.0 Weakly correlated
44 ZNF264 6 99.0 Weakly correlated
45 ZNF250 5 99.0 Weakly correlated
46 ZNF471 5 94.0 Weakly correlated
47 ZNF792 5 94.0 Weakly correlated
48 ZNF485 4 94.0 Weakly correlated
49 ZNF735 4 28.9 Weakly correlated
50 ZNF846 4 74.0 Weakly correlated
51 ZNF585A 4 99.0 Weakly correlated
52 ZNF263 3 180.0 Weakly correlated
53 ZNF610 3 28.9 Weakly correlated
54 ZNF287 3 99.0 Weakly correlated
55 ZFP69B 2 99.0 Weakly correlated
56 ZKSCAN1 2 160.0 Weakly correlated
57 ZNF587 2 28.9 Weakly correlated
58 ZNF682 2 28.9 Weakly correlated
59 ZNF274 2 99.0 Weakly correlated
60 ZNF337 2 43.0 Weakly correlated
61 ZNF383 2 99.0 Weakly correlated
62 ZNF506 2 28.9 Weakly correlated
63 ZNF549 2 87.0 Weakly correlated
64 ZNF561 2 43.0 Weakly correlated
65 ZNF695 2 28.9 Weakly correlated
66 ZNF671 2 94.0 Weakly correlated
67 ZNF2 2 99.0 Weakly correlated
68 ZNF44 2 43.0 Weakly correlated
69 ZNF81 2 99.0 Weakly correlated
70 ZNF480 2 43.0 Weakly correlated
71 ZKSCAN4 2 99.0 Weakly correlated
72 ZFP37 1 99.0 Weakly correlated
73 ZFP90 1 99.0 Weakly correlated
74 ZNF132 1 94.0 Weakly correlated
75 ZNF30 1 94.0 Weakly correlated
76 ZNF543 1 99.0 Weakly correlated
77 ZNF813 1 28.9 Weakly correlated
78 ZNF418 1 43.0 Weakly correlated
79 ZNF599 1 99.0 Weakly correlated
80 ZNF684 1 99.0 Weakly correlated
81 ZNF782 1 99.0 Weakly correlated
82 ZNF799 1 43.0 Weakly correlated
83 ZNF91 1 6.0 Moderately correlated
84 ZNF442 1 43.0 Weakly correlated
85 ZNF554 1 99.0 Weakly correlated
86 ZNF641 1 99.0 Weakly correlated
87 ZNF257 1 0.0 Weakly correlated
88 ZNF432 1 99.0 Weakly correlated
89 ZNF484 1 99.0 Weakly correlated
90 ZNF778 1 74.0 Weakly correlated
91 ZNF311 1 99.0 Weakly correlated
92 ZNF343 1 74.0 Weakly correlated
93 ZNF761 1 19.6 Highly correlated
94 ZNF256 1 74.0 Weakly correlated
95 ZNF334 1 99.0 Weakly correlated
96 ZNF483 1 99.0 Weakly correlated
97 ZNF530 1 28.9 Weakly correlated
98 ZNF544 1 0.0 Weakly correlated
99 ZNF585B 1 99.0 Weakly correlated
100 ZNF674 1 99.0 Weakly correlated
101 ZNF823 1 43.0 Weakly correlated
102 ZNF860 1 0.0 Weakly correlated
103 ZNF26 1 99.0 Weakly correlated
104 ZNF417 1 28.9 Weakly correlated
105 ZNF429 1 28.9 Weakly correlated
106 ZNF730 1 19.6 Highly correlated
107 ZNF114 1 28.9 Weakly correlated
108 ZNF233 1 99.0 Weakly correlated
109 ZNF320 1 28.9 Weakly correlated
110 ZNF331 1 94.0 Weakly correlated
111 ZNF333 1 99.0 Weakly correlated
112 ZNF45 1 99.0 Weakly correlated
113 ZNF562 1 28.9 Weakly correlated
114 ZNF879 1 99.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZFP57 87.0 Weakly correlated
2 ZNF248 99.0 Weakly correlated
3 ZNF251 94.0 Weakly correlated
4 ZNF324 99.0 Weakly correlated
5 ZNF486 8.6 Moderately correlated
6 ZNF680 28.9 Weakly correlated
7 ZNF701 28.9 Weakly correlated
8 ZNF84 99.0 Weakly correlated
9 ZNF92 28.9 Weakly correlated