ZRdb KZFP & Repeats
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LINE_L1PA4_3END

  • Name
    L1PA4_3END
  • Repbase
    L1PA4
  • Type
    LINE
  • Emergence
    19.6 Mya
  • Dfam Id
    DF0000341
Description :

ORF2 ends at bp ~684
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
ctaatatccagaatctacaatgaactcaaacaaatttacaagaaaaaaacaaacaaccccatcaaaaagtgggcgaaggatatgaacagacacttctcaaaagaagacatttatgcagccaaaagacacatgaaaaaatgctcatcatcactggccatcagagaaatgcaaatcaaaaccacaatgagataccatctcacaccagttagaatggcgatcattaaaaagtcaggaaacaacaggtgctggagaggatgtggagaaataggaacacttttacactgttggtgggactgtaaactagttcaaccattgtggaagtcagtgtggcgattcctcagggatctagaactagaaataccatttgacccagccatcccattactgggtatatacccaaaggattataaatcatgctgctataaagacacatgcacacgtatgtttattgcggcactattcacaatagcaaagacttggaaccaacccaaatgtccaacaatgatagactggattaagaaaatgtggcacatatacaccatggaatactatgcagccataaaaaatgatgagttcatgtcctttgtagggacatggatgaagctggaaaccatcattctcagcaaactatcgcaaggacaaaaaaccaaacaccgcatgttctcactcataggtgggaattgaacaatgagaacacatggacacaggaaggggaacatcacacaccggggcctgttgtggggtggggggaggggggagggatagcattaggagatatacctaatgctaaatgacgagttaatgggtgcagcacaccaacatggcacatgtatacatatgtaacaaacctgcacgttgtgcacatgtaccctaaaacttaaagtataataataaaaaaaaaa
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF486 3438 8.6 Moderately correlated
2 ZNF382 2434 99.0 Weakly correlated
3 ZNF649 900 28.9 Weakly correlated
4 ZNF93 796 8.6 Moderately correlated
5 ZNF84 629 99.0 Weakly correlated
6 ZNF765 462 8.6 Moderately correlated
7 ZNF317 182 99.0 Weakly correlated
8 ZNF679 169 28.9 Weakly correlated
9 ZFP57 162 87.0 Weakly correlated
10 ZNF141 146 43.0 Weakly correlated
11 ZNF490 130 43.0 Weakly correlated
12 ZNF425 120 94.0 Weakly correlated
13 ZNF479 118 6.4 Moderately correlated
14 ZNF136 116 74.0 Weakly correlated
15 ZNF528 116 43.0 Weakly correlated
16 ZIM3 97 87.0 Weakly correlated
17 ZNF92 97 28.9 Weakly correlated
18 ZNF248 74 99.0 Weakly correlated
19 ZNF394 70 99.0 Weakly correlated
20 ZNF560 62 43.0 Weakly correlated
21 ZNF766 61 43.0 Weakly correlated
22 ZNF705B 55 28.9 Weakly correlated
23 ZNF2 49 99.0 Weakly correlated
24 ZNF793 48 99.0 Weakly correlated
25 ZFP69B 46 99.0 Weakly correlated
26 ZNF18 46 160.0 Weakly correlated
27 ZNF251 46 94.0 Weakly correlated
28 ZNF558 45 99.0 Weakly correlated
29 ZNF680 44 28.9 Weakly correlated
30 ZNF28 43 28.9 Weakly correlated
31 ZNF534 42 19.6 Highly correlated
32 ZNF75D 40 94.0 Weakly correlated
33 ZFP37 38 99.0 Weakly correlated
34 ZNF17 36 69.0 Weakly correlated
35 ZNF701 35 28.9 Weakly correlated
36 ZNF324 34 99.0 Weakly correlated
37 ZNF723 30 15.2 Moderately correlated
38 ZNF610 29 28.9 Weakly correlated
39 ZNF705D 29 28.9 Weakly correlated
40 ZNF101 26 43.0 Weakly correlated
41 ZNF354A 24 99.0 Weakly correlated
42 ZNF133 23 99.0 Weakly correlated
43 ZNF519 23 19.6 Highly correlated
44 ZNF547 18 74.0 Weakly correlated
45 ZNF263 17 180.0 Weakly correlated
46 ZNF10 16 99.0 Weakly correlated
47 ZNF585B 16 99.0 Weakly correlated
48 ZNF85 16 28.9 Weakly correlated
49 ZNF8 15 99.0 Weakly correlated
50 ZNF485 14 94.0 Weakly correlated
51 ZNF202 12 160.0 Weakly correlated
52 ZNF554 12 99.0 Weakly correlated
53 ZKSCAN1 11 160.0 Weakly correlated
54 ZNF334 11 99.0 Weakly correlated
55 ZNF33A 11 99.0 Weakly correlated
56 ZNF585A 11 99.0 Weakly correlated
57 ZNF160 10 74.0 Weakly correlated
58 ZNF175 10 94.0 Weakly correlated
59 ZNF182 10 99.0 Weakly correlated
60 ZNF445 10 99.0 Weakly correlated
61 ZNF140 9 99.0 Weakly correlated
62 ZNF735 9 28.9 Weakly correlated
63 ZNF792 9 94.0 Weakly correlated
64 ZNF471 8 94.0 Weakly correlated
65 ZNF671 8 94.0 Weakly correlated
66 ZNF707 8 74.0 Weakly correlated
67 ZNF157 7 99.0 Weakly correlated
68 ZNF41 7 99.0 Weakly correlated
69 ZNF506 7 28.9 Weakly correlated
70 ZNF682 7 28.9 Weakly correlated
71 ZNF786 7 99.0 Weakly correlated
72 ZNF100 6 28.9 Weakly correlated
73 ZNF124 6 43.0 Weakly correlated
74 ZNF222 6 43.0 Weakly correlated
75 ZNF264 6 99.0 Weakly correlated
76 ZNF468 6 28.9 Weakly correlated
77 ZNF584 6 99.0 Weakly correlated
78 ZNF641 6 99.0 Weakly correlated
79 ZNF730 6 19.6 Highly correlated
80 ZKSCAN8 5 160.0 Weakly correlated
81 ZNF287 5 99.0 Weakly correlated
82 ZNF320 5 28.9 Weakly correlated
83 ZNF429 5 28.9 Weakly correlated
84 ZNF583 5 99.0 Weakly correlated
85 ZNF677 5 99.0 Weakly correlated
86 ZFP28 4 99.0 Weakly correlated
87 ZNF197 4 99.0 Weakly correlated
88 ZNF230 4 28.9 Weakly correlated
89 ZNF257 4 0.0 Weakly correlated
90 ZNF343 4 74.0 Weakly correlated
91 ZNF354C 4 99.0 Weakly correlated
92 ZNF441 4 43.0 Weakly correlated
93 ZNF589 4 28.9 Weakly correlated
94 ZNF695 4 28.9 Weakly correlated
95 ZNF211 3 94.0 Weakly correlated
96 ZNF26 3 99.0 Weakly correlated
97 ZNF274 3 99.0 Weakly correlated
98 ZNF331 3 94.0 Weakly correlated
99 ZNF347 3 43.0 Weakly correlated
100 ZNF350 3 99.0 Weakly correlated
101 ZNF418 3 43.0 Weakly correlated
102 ZNF483 3 99.0 Weakly correlated
103 ZNF544 3 0.0 Weakly correlated
104 ZNF778 3 74.0 Weakly correlated
105 ZNF81 3 99.0 Weakly correlated
106 ZNF879 3 99.0 Weakly correlated
107 ZNF91 3 6.0 Moderately correlated
108 ZFP1 2 99.0 Weakly correlated
109 ZFP69 2 99.0 Weakly correlated
110 ZNF114 2 28.9 Weakly correlated
111 ZNF169 2 94.0 Weakly correlated
112 ZNF215 2 99.0 Weakly correlated
113 ZNF223 2 43.0 Weakly correlated
114 ZNF225 2 74.0 Weakly correlated
115 ZNF250 2 99.0 Weakly correlated
116 ZNF273 2 28.9 Weakly correlated
117 ZNF284 2 43.0 Weakly correlated
118 ZNF302 2 43.0 Weakly correlated
119 ZNF304 2 99.0 Weakly correlated
120 ZNF337 2 43.0 Weakly correlated
121 ZNF354B 2 99.0 Weakly correlated
122 ZNF417 2 28.9 Weakly correlated
123 ZNF430 2 19.6 Highly correlated
124 ZNF43 2 43.0 Weakly correlated
125 ZNF454 2 99.0 Weakly correlated
126 ZNF480 2 43.0 Weakly correlated
127 ZNF514 2 94.0 Weakly correlated
128 ZNF540 2 87.0 Weakly correlated
129 ZNF548 2 94.0 Weakly correlated
130 ZNF549 2 87.0 Weakly correlated
131 ZNF555 2 94.0 Weakly correlated
132 ZNF559 2 74.0 Weakly correlated
133 ZNF565 2 99.0 Weakly correlated
134 ZNF568 2 99.0 Weakly correlated
135 ZNF586 2 43.0 Weakly correlated
136 ZNF611 2 19.6 Highly correlated
137 ZNF626 2 0.0 Weakly correlated
138 ZNF66 2 0.0 Weakly correlated
139 ZNF684 2 99.0 Weakly correlated
140 ZNF705E 2 0.0 Weakly correlated
141 ZNF746 2 99.0 Weakly correlated
142 ZNF763 2 15.2 Moderately correlated
143 ZNF808 2 19.6 Highly correlated
144 ZNF813 2 28.9 Weakly correlated
145 ZNF823 2 43.0 Weakly correlated
146 ZNF829 2 99.0 Weakly correlated
147 ZNF846 2 74.0 Weakly correlated
148 ZNF878 2 43.0 Weakly correlated
149 ZFP30 1 99.0 Weakly correlated
150 ZIK1 1 87.0 Weakly correlated
151 ZKSCAN2 1 180.0 Weakly correlated
152 ZKSCAN5 1 160.0 Weakly correlated
153 ZNF12 1 99.0 Weakly correlated
154 ZNF132 1 94.0 Weakly correlated
155 ZNF14 1 69.0 Weakly correlated
156 ZNF180 1 99.0 Weakly correlated
157 ZNF184 1 99.0 Weakly correlated
158 ZNF189 1 99.0 Weakly correlated
159 ZNF19 1 99.0 Weakly correlated
160 ZNF20 1 43.0 Weakly correlated
161 ZNF213 1 180.0 Weakly correlated
162 ZNF214 1 99.0 Weakly correlated
163 ZNF224 1 69.0 Weakly correlated
164 ZNF226 1 99.0 Weakly correlated
165 ZNF233 1 99.0 Weakly correlated
166 ZNF234 1 99.0 Weakly correlated
167 ZNF254 1 43.0 Weakly correlated
168 ZNF256 1 74.0 Weakly correlated
169 ZNF282 1 319.0 Weakly correlated
170 ZNF300 1 99.0 Weakly correlated
171 ZNF311 1 99.0 Weakly correlated
172 ZNF34 1 99.0 Weakly correlated
173 ZNF416 1 43.0 Weakly correlated
174 ZNF420 1 94.0 Weakly correlated
175 ZNF426 1 87.0 Weakly correlated
176 ZNF431 1 28.9 Weakly correlated
177 ZNF432 1 99.0 Weakly correlated
178 ZNF440 1 28.9 Weakly correlated
179 ZNF442 1 43.0 Weakly correlated
180 ZNF446 1 94.0 Weakly correlated
181 ZNF44 1 43.0 Weakly correlated
182 ZNF45 1 99.0 Weakly correlated
183 ZNF470 1 99.0 Weakly correlated
184 ZNF484 1 99.0 Weakly correlated
185 ZNF510 1 99.0 Weakly correlated
186 ZNF529 1 99.0 Weakly correlated
187 ZNF557 1 15.2 Moderately correlated
188 ZNF561 1 43.0 Weakly correlated
189 ZNF562 1 28.9 Weakly correlated
190 ZNF563 1 28.9 Weakly correlated
191 ZNF566 1 99.0 Weakly correlated
192 ZNF567 1 99.0 Weakly correlated
193 ZNF569 1 99.0 Weakly correlated
194 ZNF573 1 94.0 Weakly correlated
195 ZNF577 1 94.0 Weakly correlated
196 ZNF582 1 99.0 Weakly correlated
197 ZNF605 1 99.0 Weakly correlated
198 ZNF607 1 43.0 Weakly correlated
199 ZNF614 1 99.0 Weakly correlated
200 ZNF615 1 99.0 Weakly correlated
201 ZNF658 1 99.0 Weakly correlated
202 ZNF665 1 28.9 Weakly correlated
203 ZNF674 1 99.0 Weakly correlated
204 ZNF675 1 8.6 Moderately correlated
205 ZNF688 1 160.0 Weakly correlated
206 ZNF699 1 99.0 Weakly correlated
207 ZNF716 1 19.6 Highly correlated
208 ZNF717 1 0.0 Weakly correlated
209 ZNF718 1 19.6 Highly correlated
210 ZNF726 1 28.9 Weakly correlated
211 ZNF736 1 43.0 Weakly correlated
212 ZNF747 1 43.0 Weakly correlated
213 ZNF749 1 28.9 Weakly correlated
214 ZNF74 1 99.0 Weakly correlated
215 ZNF761 1 19.6 Highly correlated
216 ZNF764 1 160.0 Weakly correlated
217 ZNF772 1 94.0 Weakly correlated
218 ZNF773 1 94.0 Weakly correlated
219 ZNF77 1 87.0 Weakly correlated
220 ZNF799 1 43.0 Weakly correlated
221 ZNF845 1 28.9 Weakly correlated
222 ZNF880 1 28.9 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF486 2214 8.6 Moderately correlated
2 ZNF649 905 28.9 Weakly correlated
3 ZNF93 772 8.6 Moderately correlated
4 ZNF382 754 99.0 Weakly correlated
5 ZNF84 545 99.0 Weakly correlated
6 ZNF765 437 8.6 Moderately correlated
7 ZNF141 133 43.0 Weakly correlated
8 ZNF490 125 43.0 Weakly correlated
9 ZNF425 102 94.0 Weakly correlated
10 ZNF317 100 99.0 Weakly correlated
11 ZNF248 69 99.0 Weakly correlated
12 ZNF92 69 28.9 Weakly correlated
13 ZIM3 63 87.0 Weakly correlated
14 ZFP57 37 87.0 Weakly correlated
15 ZNF136 36 74.0 Weakly correlated
16 ZNF534 34 19.6 Highly correlated
17 ZNF17 32 69.0 Weakly correlated
18 ZNF28 29 28.9 Weakly correlated
19 ZNF701 26 28.9 Weakly correlated
20 ZNF766 23 43.0 Weakly correlated
21 ZNF528 21 43.0 Weakly correlated
22 ZNF75D 20 94.0 Weakly correlated
23 ZNF793 19 99.0 Weakly correlated
24 ZNF558 18 99.0 Weakly correlated
25 ZNF18 16 160.0 Weakly correlated
26 ZNF479 15 6.4 Moderately correlated
27 ZNF354A 15 99.0 Weakly correlated
28 ZNF85 14 28.9 Weakly correlated
29 ZNF10 13 99.0 Weakly correlated
30 ZNF679 12 28.9 Weakly correlated
31 ZNF680 12 28.9 Weakly correlated
32 ZNF560 12 43.0 Weakly correlated
33 ZNF133 11 99.0 Weakly correlated
34 ZNF202 9 160.0 Weakly correlated
35 ZNF723 9 15.2 Moderately correlated
36 ZNF101 8 43.0 Weakly correlated
37 ZNF735 6 28.9 Weakly correlated
38 ZNF263 6 180.0 Weakly correlated
39 ZNF33A 6 99.0 Weakly correlated
40 ZNF324 6 99.0 Weakly correlated
41 ZNF160 5 74.0 Weakly correlated
42 ZNF671 5 94.0 Weakly correlated
43 ZNF140 5 99.0 Weakly correlated
44 ZFP69B 5 99.0 Weakly correlated
45 ZNF394 4 99.0 Weakly correlated
46 ZNF682 4 28.9 Weakly correlated
47 ZNF705B 3 28.9 Weakly correlated
48 ZNF251 3 94.0 Weakly correlated
49 ZNF585A 3 99.0 Weakly correlated
50 ZNF8 3 99.0 Weakly correlated
51 ZNF257 3 0.0 Weakly correlated
52 ZNF677 3 99.0 Weakly correlated
53 ZNF264 3 99.0 Weakly correlated
54 ZNF2 3 99.0 Weakly correlated
55 ZNF786 3 99.0 Weakly correlated
56 ZNF792 3 94.0 Weakly correlated
57 ZNF343 3 74.0 Weakly correlated
58 ZNF705D 2 28.9 Weakly correlated
59 ZFP28 2 99.0 Weakly correlated
60 ZNF468 2 28.9 Weakly correlated
61 ZNF337 2 43.0 Weakly correlated
62 ZNF287 2 99.0 Weakly correlated
63 ZNF626 2 0.0 Weakly correlated
64 ZNF684 2 99.0 Weakly correlated
65 ZNF483 2 99.0 Weakly correlated
66 ZNF41 2 99.0 Weakly correlated
67 ZNF250 2 99.0 Weakly correlated
68 ZNF695 2 28.9 Weakly correlated
69 ZNF81 2 99.0 Weakly correlated
70 ZNF585B 2 99.0 Weakly correlated
71 ZNF610 2 28.9 Weakly correlated
72 ZNF485 2 94.0 Weakly correlated
73 ZNF471 2 94.0 Weakly correlated
74 ZNF506 1 28.9 Weakly correlated
75 ZNF549 1 87.0 Weakly correlated
76 ZNF707 1 74.0 Weakly correlated
77 ZNF347 1 43.0 Weakly correlated
78 ZFP69 1 99.0 Weakly correlated
79 ZNF320 1 28.9 Weakly correlated
80 ZNF124 1 43.0 Weakly correlated
81 ZNF100 1 28.9 Weakly correlated
82 ZNF157 1 99.0 Weakly correlated
83 ZNF417 1 28.9 Weakly correlated
84 ZFP1 1 99.0 Weakly correlated
85 ZNF641 1 99.0 Weakly correlated
86 ZNF879 1 99.0 Weakly correlated
87 ZNF705E 1 0.0 Weakly correlated
88 ZNF799 1 43.0 Weakly correlated
89 ZNF334 1 99.0 Weakly correlated
90 ZNF211 1 94.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZFP57 87.0 Weakly correlated
2 ZNF248 99.0 Weakly correlated
3 ZNF263 180.0 Weakly correlated
4 ZNF324 99.0 Weakly correlated
5 ZNF486 8.6 Moderately correlated
6 ZNF680 28.9 Weakly correlated
7 ZNF701 28.9 Weakly correlated
8 ZNF75D 94.0 Weakly correlated
9 ZNF84 99.0 Weakly correlated
10 ZNF92 28.9 Weakly correlated