ZRdb KZFP & Repeats
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LINE_L1PA3_3END

  • Name
    L1PA3_3END
  • Repbase
    L1PA3
  • Type
    LINE
  • Emergence
    19.6 Mya
  • Dfam Id
    DF0000340
Description :

ORF2 ends at bp ~684
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
ctaatatccagaatctacaatgaactcaaacaaatttacaagaaaaaaacaaacaaccccatcaaaaagtgggcgaaggacatgaacagacacttctcaaaagaagacatttatgcagccaaaaaacacatgaaaaaatgctcaccatcactggccatcagagaaatgcaaatcaaaaccacaatgagataccatctcacaccagttagaatggcaatcattaaaaagtcaggaaacaacaggtgctggagaggatgtggagaaataggaacacttttacactgttggtgggactgtaaactagttcaaccattgtggaagtcagtgtggcgattcctcagggatctagaactagaaataccatttgacccagccatcccattactgggtatatacccaaaggactataaatcatgctgctataaagacacatgcacacgtatgtttattgcggcactattcacaatagcaaagacttggaaccaacccaaatgtccaacaatgatagactggattaagaaaatgtggcacatatacaccatggaatactatgcagccataaaaaatgatgagttcatgtcctttgtagggacatggatgaaattggaaatcatcattctcagtaaactatcgcaagaacaaaaaaccaaacaccgcatattctcactcataggtgggaattgaacaatgagaacacatggacacaggaaggggaacatcacactctggggactgttgtggggtggggggaggggggagggatagcattgggagatatacctaatgctagatgacgagttagtgggtgcagcgcaccagcatggcacatgtatacatatgtaactaacctgcacattgtgcacatgtaccctaaaacttaaagtataataataataaaaaaa
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 2495 99.0 Weakly correlated
2 ZNF486 2029 8.6 Moderately correlated
3 ZNF84 1100 99.0 Weakly correlated
4 ZNF649 928 28.9 Weakly correlated
5 ZNF93 462 8.6 Moderately correlated
6 ZNF141 309 43.0 Weakly correlated
7 ZNF92 191 28.9 Weakly correlated
8 ZFP69B 190 99.0 Weakly correlated
9 ZNF528 171 43.0 Weakly correlated
10 ZNF2 167 99.0 Weakly correlated
11 ZNF394 163 99.0 Weakly correlated
12 ZNF679 152 28.9 Weakly correlated
13 ZNF136 147 74.0 Weakly correlated
14 ZNF317 134 99.0 Weakly correlated
15 ZNF610 129 28.9 Weakly correlated
16 ZFP57 114 87.0 Weakly correlated
17 ZNF324 109 99.0 Weakly correlated
18 ZNF17 103 69.0 Weakly correlated
19 ZNF735 103 28.9 Weakly correlated
20 ZNF560 94 43.0 Weakly correlated
21 ZFP37 90 99.0 Weakly correlated
22 ZNF18 86 160.0 Weakly correlated
23 ZNF479 75 6.4 Moderately correlated
24 ZNF766 69 43.0 Weakly correlated
25 ZNF425 67 94.0 Weakly correlated
26 ZNF101 66 43.0 Weakly correlated
27 ZNF28 62 28.9 Weakly correlated
28 ZNF534 60 19.6 Highly correlated
29 ZNF558 59 99.0 Weakly correlated
30 ZNF490 57 43.0 Weakly correlated
31 ZIM3 56 87.0 Weakly correlated
32 ZNF680 54 28.9 Weakly correlated
33 ZNF701 54 28.9 Weakly correlated
34 ZNF182 45 99.0 Weakly correlated
35 ZNF248 40 99.0 Weakly correlated
36 ZNF793 39 99.0 Weakly correlated
37 ZNF792 32 94.0 Weakly correlated
38 ZNF251 31 94.0 Weakly correlated
39 ZNF705B 31 28.9 Weakly correlated
40 ZNF519 26 19.6 Highly correlated
41 ZNF263 23 180.0 Weakly correlated
42 ZNF33A 22 99.0 Weakly correlated
43 ZNF554 22 99.0 Weakly correlated
44 ZNF705D 21 28.9 Weakly correlated
45 ZNF765 21 8.6 Moderately correlated
46 ZNF585B 19 99.0 Weakly correlated
47 ZKSCAN8 18 160.0 Weakly correlated
48 ZNF124 18 43.0 Weakly correlated
49 ZNF547 18 74.0 Weakly correlated
50 ZNF91 18 6.0 Moderately correlated
51 ZNF202 17 160.0 Weakly correlated
52 ZNF264 17 99.0 Weakly correlated
53 ZNF585A 17 99.0 Weakly correlated
54 ZNF589 17 28.9 Weakly correlated
55 ZNF707 16 74.0 Weakly correlated
56 ZNF506 15 28.9 Weakly correlated
57 ZNF723 15 15.2 Moderately correlated
58 ZNF561 14 43.0 Weakly correlated
59 ZNF671 14 94.0 Weakly correlated
60 ZNF682 14 28.9 Weakly correlated
61 ZKSCAN1 13 160.0 Weakly correlated
62 ZNF140 13 99.0 Weakly correlated
63 ZNF175 13 94.0 Weakly correlated
64 ZNF10 12 99.0 Weakly correlated
65 ZNF441 11 43.0 Weakly correlated
66 ZNF695 11 28.9 Weakly correlated
67 ZNF75D 11 94.0 Weakly correlated
68 ZNF133 10 99.0 Weakly correlated
69 ZNF641 10 99.0 Weakly correlated
70 ZNF85 10 28.9 Weakly correlated
71 ZNF160 9 74.0 Weakly correlated
72 ZNF197 9 99.0 Weakly correlated
73 ZNF334 8 99.0 Weakly correlated
74 ZNF343 8 74.0 Weakly correlated
75 ZNF8 8 99.0 Weakly correlated
76 ZNF189 7 99.0 Weakly correlated
77 ZNF354A 7 99.0 Weakly correlated
78 ZNF485 7 94.0 Weakly correlated
79 ZNF584 7 99.0 Weakly correlated
80 ZNF674 7 99.0 Weakly correlated
81 ZNF445 6 99.0 Weakly correlated
82 ZNF468 6 28.9 Weakly correlated
83 ZNF471 6 94.0 Weakly correlated
84 ZNF559 6 74.0 Weakly correlated
85 ZNF563 6 28.9 Weakly correlated
86 ZNF337 5 43.0 Weakly correlated
87 ZNF350 5 99.0 Weakly correlated
88 ZNF429 5 28.9 Weakly correlated
89 ZNF677 5 99.0 Weakly correlated
90 ZNF257 4 0.0 Weakly correlated
91 ZNF418 4 43.0 Weakly correlated
92 ZNF587 4 28.9 Weakly correlated
93 ZNF786 4 99.0 Weakly correlated
94 ZFP28 3 99.0 Weakly correlated
95 ZFP90 3 99.0 Weakly correlated
96 ZNF222 3 43.0 Weakly correlated
97 ZNF230 3 28.9 Weakly correlated
98 ZNF274 3 99.0 Weakly correlated
99 ZNF304 3 99.0 Weakly correlated
100 ZNF354C 3 99.0 Weakly correlated
101 ZNF420 3 94.0 Weakly correlated
102 ZNF44 3 43.0 Weakly correlated
103 ZFP69 2 99.0 Weakly correlated
104 ZKSCAN5 2 160.0 Weakly correlated
105 ZNF157 2 99.0 Weakly correlated
106 ZNF177 2 94.0 Weakly correlated
107 ZNF250 2 99.0 Weakly correlated
108 ZNF26 2 99.0 Weakly correlated
109 ZNF282 2 319.0 Weakly correlated
110 ZNF284 2 43.0 Weakly correlated
111 ZNF287 2 99.0 Weakly correlated
112 ZNF331 2 94.0 Weakly correlated
113 ZNF432 2 99.0 Weakly correlated
114 ZNF510 2 99.0 Weakly correlated
115 ZNF549 2 87.0 Weakly correlated
116 ZNF565 2 99.0 Weakly correlated
117 ZNF577 2 94.0 Weakly correlated
118 ZNF583 2 99.0 Weakly correlated
119 ZNF597 2 94.0 Weakly correlated
120 ZNF605 2 99.0 Weakly correlated
121 ZNF611 2 19.6 Highly correlated
122 ZNF626 2 0.0 Weakly correlated
123 ZNF700 2 28.9 Weakly correlated
124 ZNF747 2 43.0 Weakly correlated
125 ZNF75A 2 94.0 Weakly correlated
126 ZNF808 2 19.6 Highly correlated
127 RBAK 1 99.0 Weakly correlated
128 ZFP1 1 99.0 Weakly correlated
129 ZKSCAN2 1 180.0 Weakly correlated
130 ZNF12 1 99.0 Weakly correlated
131 ZNF154 1 94.0 Weakly correlated
132 ZNF223 1 43.0 Weakly correlated
133 ZNF224 1 69.0 Weakly correlated
134 ZNF233 1 99.0 Weakly correlated
135 ZNF234 1 99.0 Weakly correlated
136 ZNF273 1 28.9 Weakly correlated
137 ZNF30 1 94.0 Weakly correlated
138 ZNF320 1 28.9 Weakly correlated
139 ZNF417 1 28.9 Weakly correlated
140 ZNF433 1 43.0 Weakly correlated
141 ZNF480 1 43.0 Weakly correlated
142 ZNF483 1 99.0 Weakly correlated
143 ZNF500 1 160.0 Weakly correlated
144 ZNF525 1 19.6 Highly correlated
145 ZNF530 1 28.9 Weakly correlated
146 ZNF540 1 87.0 Weakly correlated
147 ZNF555 1 94.0 Weakly correlated
148 ZNF562 1 28.9 Weakly correlated
149 ZNF571 1 99.0 Weakly correlated
150 ZNF573 1 94.0 Weakly correlated
151 ZNF616 1 43.0 Weakly correlated
152 ZNF630 1 94.0 Weakly correlated
153 ZNF669 1 43.0 Weakly correlated
154 ZNF705E 1 0.0 Weakly correlated
155 ZNF730 1 19.6 Highly correlated
156 ZNF776 1 43.0 Weakly correlated
157 ZNF777 1 319.0 Weakly correlated
158 ZNF778 1 74.0 Weakly correlated
159 ZNF780A 1 43.0 Weakly correlated
160 ZNF790 1 99.0 Weakly correlated
161 ZNF7 1 99.0 Weakly correlated
162 ZNF816 1 28.9 Weakly correlated
163 ZNF823 1 43.0 Weakly correlated
164 ZNF846 1 74.0 Weakly correlated
165 ZNF879 1 99.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF486 1255 8.6 Moderately correlated
2 ZNF649 920 28.9 Weakly correlated
3 ZNF84 899 99.0 Weakly correlated
4 ZNF382 756 99.0 Weakly correlated
5 ZNF93 414 8.6 Moderately correlated
6 ZNF141 249 43.0 Weakly correlated
7 ZNF92 154 28.9 Weakly correlated
8 ZNF735 100 28.9 Weakly correlated
9 ZNF17 84 69.0 Weakly correlated
10 ZNF317 66 99.0 Weakly correlated
11 ZNF425 51 94.0 Weakly correlated
12 ZNF490 50 43.0 Weakly correlated
13 ZNF28 44 28.9 Weakly correlated
14 ZNF136 43 74.0 Weakly correlated
15 ZNF534 41 19.6 Highly correlated
16 ZNF248 39 99.0 Weakly correlated
17 ZNF701 35 28.9 Weakly correlated
18 ZIM3 31 87.0 Weakly correlated
19 ZFP57 31 87.0 Weakly correlated
20 ZNF33A 25 99.0 Weakly correlated
21 ZNF2 23 99.0 Weakly correlated
22 ZFP69B 21 99.0 Weakly correlated
23 ZNF765 19 8.6 Moderately correlated
24 ZNF101 16 43.0 Weakly correlated
25 ZNF560 16 43.0 Weakly correlated
26 ZNF528 15 43.0 Weakly correlated
27 ZNF394 13 99.0 Weakly correlated
28 ZNF18 13 160.0 Weakly correlated
29 ZNF793 12 99.0 Weakly correlated
30 ZNF85 11 28.9 Weakly correlated
31 ZNF91 11 6.0 Moderately correlated
32 ZNF324 10 99.0 Weakly correlated
33 ZNF202 8 160.0 Weakly correlated
34 ZNF479 8 6.4 Moderately correlated
35 ZNF610 8 28.9 Weakly correlated
36 ZNF140 8 99.0 Weakly correlated
37 ZNF10 8 99.0 Weakly correlated
38 ZNF263 8 180.0 Weakly correlated
39 ZNF682 7 28.9 Weakly correlated
40 ZNF558 7 99.0 Weakly correlated
41 ZNF766 6 43.0 Weakly correlated
42 ZNF679 6 28.9 Weakly correlated
43 ZNF354A 5 99.0 Weakly correlated
44 ZNF251 5 94.0 Weakly correlated
45 ZNF723 5 15.2 Moderately correlated
46 ZNF337 5 43.0 Weakly correlated
47 ZNF160 5 74.0 Weakly correlated
48 ZNF75D 5 94.0 Weakly correlated
49 ZNF343 5 74.0 Weakly correlated
50 ZNF587 4 28.9 Weakly correlated
51 ZNF585A 4 99.0 Weakly correlated
52 ZNF334 4 99.0 Weakly correlated
53 ZNF792 3 94.0 Weakly correlated
54 ZNF674 3 99.0 Weakly correlated
55 ZNF468 3 28.9 Weakly correlated
56 ZNF506 3 28.9 Weakly correlated
57 ZNF264 3 99.0 Weakly correlated
58 ZNF707 3 74.0 Weakly correlated
59 ZNF671 3 94.0 Weakly correlated
60 ZNF680 3 28.9 Weakly correlated
61 ZFP90 3 99.0 Weakly correlated
62 ZNF626 2 0.0 Weakly correlated
63 ZNF677 2 99.0 Weakly correlated
64 ZNF189 2 99.0 Weakly correlated
65 ZNF695 2 28.9 Weakly correlated
66 ZNF441 2 43.0 Weakly correlated
67 ZNF250 2 99.0 Weakly correlated
68 ZNF433 1 43.0 Weakly correlated
69 ZNF320 1 28.9 Weakly correlated
70 ZNF641 1 99.0 Weakly correlated
71 ZFP28 1 99.0 Weakly correlated
72 ZKSCAN1 1 160.0 Weakly correlated
73 ZKSCAN5 1 160.0 Weakly correlated
74 ZNF133 1 99.0 Weakly correlated
75 ZNF154 1 94.0 Weakly correlated
76 ZNF350 1 99.0 Weakly correlated
77 ZNF26 1 99.0 Weakly correlated
78 ZNF471 1 94.0 Weakly correlated
79 ZFP1 1 99.0 Weakly correlated
80 ZNF485 1 94.0 Weakly correlated
81 ZNF432 1 99.0 Weakly correlated
82 ZNF417 1 28.9 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZFP57 87.0 Weakly correlated
2 ZFP69B 99.0 Weakly correlated
3 ZNF263 180.0 Weakly correlated
4 ZNF324 99.0 Weakly correlated
5 ZNF486 8.6 Moderately correlated
6 ZNF558 99.0 Weakly correlated
7 ZNF701 28.9 Weakly correlated
8 ZNF84 99.0 Weakly correlated
9 ZNF92 28.9 Weakly correlated