ZRdb KZFP & Repeats
...

LINE_L1PA2_3END

  • Name
    L1PA2_3END
  • Repbase
    L1PA2
  • Type
    LINE
  • Emergence
    15.2 Mya
  • Dfam Id
    DF0000339
Description :

ORF2 ends at bp ~684
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
ctaatatccagaatctacaatgaactcaaacaaatttacaagaaaaaaacaaacaaccccatcaaaaagtgggcgaaggacatgaacagacacttctcaaaagaagacatttatgcagccaaaaaacacatgaaaaaatgctcatcatcactggccatcagagaaatgcaaatcaaaaccacaatgagataccatctcacaccagttagaatggcaatcattaaaaagtcaggaaacaacaggtgctggagaggatgtggagaaataggaacacttttacactgttggtgggactgtaaactagttcaaccattgtggaagtcagtgtggcgattcctcagggatctagaactagaaataccatttgacccagccatcccattactgggtatatacccaaaggactataaatcatgctgctataaagacacatgcacacgtatgtttattgcggcattattcacaatagcaaagacttggaaccaacccaaatgtccaacaatgatagactggattaagaaaatgtggcacatatacaccatggaatactatgcagccataaaaaatgatgagttcatgtcctttgtagggacatggatgaaattggaaatcatcattctcagtaaactatcgcaagaacaaaaaaccaaacaccgcatattctcactcataggtgggaattgaacaatgagatcacatggacacaggaaggggaatatcacactctggggactgtggtggggtggggggaggggggagggatagcattgggagatatacctaatgctagatgacgagttagtgggtgcagcgcaccagcatggcacatgtatacatatgtaactaacctgcacaatgtgcacatgtaccctaaaacttaaagtataataaaaaaaaaaaaa
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
...
Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 1101 99.0 Weakly correlated
2 ZNF84 351 99.0 Weakly correlated
3 ZNF486 284 8.6 Moderately correlated
4 ZNF649 249 28.9 Weakly correlated
5 ZFP69B 235 99.0 Weakly correlated
6 ZNF2 228 99.0 Weakly correlated
7 ZNF141 202 43.0 Weakly correlated
8 ZNF394 179 99.0 Weakly correlated
9 ZNF610 176 28.9 Weakly correlated
10 ZNF560 126 43.0 Weakly correlated
11 ZNF324 125 99.0 Weakly correlated
12 ZNF679 125 28.9 Weakly correlated
13 ZNF18 102 160.0 Weakly correlated
14 ZNF528 102 43.0 Weakly correlated
15 ZFP37 97 99.0 Weakly correlated
16 ZNF766 89 43.0 Weakly correlated
17 ZNF136 75 74.0 Weakly correlated
18 ZNF182 72 99.0 Weakly correlated
19 ZNF558 72 99.0 Weakly correlated
20 ZNF92 64 28.9 Weakly correlated
21 ZNF101 55 43.0 Weakly correlated
22 ZFP57 54 87.0 Weakly correlated
23 ZNF792 52 94.0 Weakly correlated
24 ZNF680 51 28.9 Weakly correlated
25 ZIM3 37 87.0 Weakly correlated
26 ZNF28 36 28.9 Weakly correlated
27 ZNF317 36 99.0 Weakly correlated
28 ZNF705B 30 28.9 Weakly correlated
29 ZNF589 29 28.9 Weakly correlated
30 ZNF425 28 94.0 Weakly correlated
31 ZNF175 27 94.0 Weakly correlated
32 ZNF33A 27 99.0 Weakly correlated
33 ZNF251 25 94.0 Weakly correlated
34 ZNF547 25 74.0 Weakly correlated
35 ZNF91 25 6.0 Moderately correlated
36 ZNF93 24 8.6 Moderately correlated
37 ZNF263 23 180.0 Weakly correlated
38 ZNF671 23 94.0 Weakly correlated
39 ZKSCAN8 22 160.0 Weakly correlated
40 ZNF343 22 74.0 Weakly correlated
41 ZNF585B 22 99.0 Weakly correlated
42 ZNF17 19 69.0 Weakly correlated
43 ZKSCAN1 18 160.0 Weakly correlated
44 ZNF707 18 74.0 Weakly correlated
45 ZNF202 17 160.0 Weakly correlated
46 ZNF479 17 6.4 Moderately correlated
47 ZNF490 17 43.0 Weakly correlated
48 ZNF75D 17 94.0 Weakly correlated
49 ZNF140 16 99.0 Weakly correlated
50 ZNF264 16 99.0 Weakly correlated
51 ZNF534 16 19.6 Weakly correlated
52 ZNF584 16 99.0 Weakly correlated
53 ZNF641 16 99.0 Weakly correlated
54 ZNF189 15 99.0 Weakly correlated
55 ZNF519 15 19.6 Weakly correlated
56 ZNF723 15 15.2 Highly correlated
57 ZNF793 15 99.0 Weakly correlated
58 ZNF559 14 74.0 Weakly correlated
59 ZNF705D 14 28.9 Weakly correlated
60 ZNF765 14 8.6 Moderately correlated
61 ZNF124 13 43.0 Weakly correlated
62 ZNF554 13 99.0 Weakly correlated
63 ZNF8 13 99.0 Weakly correlated
64 ZNF695 12 28.9 Weakly correlated
65 ZNF197 11 99.0 Weakly correlated
66 ZNF701 11 28.9 Weakly correlated
67 ZNF354A 10 99.0 Weakly correlated
68 ZNF561 10 43.0 Weakly correlated
69 ZNF248 9 99.0 Weakly correlated
70 ZNF674 9 99.0 Weakly correlated
71 ZNF735 9 28.9 Weakly correlated
72 ZKSCAN5 8 160.0 Weakly correlated
73 ZNF429 8 28.9 Weakly correlated
74 ZNF585A 8 99.0 Weakly correlated
75 ZNF682 8 28.9 Weakly correlated
76 ZNF100 7 28.9 Weakly correlated
77 ZNF133 7 99.0 Weakly correlated
78 ZNF257 7 0.0 Weakly correlated
79 ZNF282 7 319.0 Weakly correlated
80 ZNF287 7 99.0 Weakly correlated
81 ZNF334 7 99.0 Weakly correlated
82 ZNF441 7 43.0 Weakly correlated
83 ZNF506 7 28.9 Weakly correlated
84 ZNF778 7 74.0 Weakly correlated
85 ZNF160 6 74.0 Weakly correlated
86 ZNF169 6 94.0 Weakly correlated
87 ZNF222 6 43.0 Weakly correlated
88 ZNF337 6 43.0 Weakly correlated
89 ZNF471 6 94.0 Weakly correlated
90 ZNF157 5 99.0 Weakly correlated
91 ZNF211 5 94.0 Weakly correlated
92 ZNF284 5 43.0 Weakly correlated
93 ZNF418 5 43.0 Weakly correlated
94 ZNF420 5 94.0 Weakly correlated
95 ZNF468 5 28.9 Weakly correlated
96 ZNF544 5 0.0 Weakly correlated
97 ZNF557 5 15.2 Highly correlated
98 ZNF611 5 19.6 Weakly correlated
99 ZNF677 5 99.0 Weakly correlated
100 ZNF786 5 99.0 Weakly correlated
101 ZNF223 4 43.0 Weakly correlated
102 ZNF273 4 28.9 Weakly correlated
103 ZNF304 4 99.0 Weakly correlated
104 ZNF320 4 28.9 Weakly correlated
105 ZNF354C 4 99.0 Weakly correlated
106 ZNF432 4 99.0 Weakly correlated
107 ZNF44 4 43.0 Weakly correlated
108 ZNF485 4 94.0 Weakly correlated
109 ZNF529 4 99.0 Weakly correlated
110 ZNF549 4 87.0 Weakly correlated
111 ZNF555 4 94.0 Weakly correlated
112 ZNF577 4 94.0 Weakly correlated
113 ZNF582 4 99.0 Weakly correlated
114 ZNF808 4 19.6 Weakly correlated
115 ZNF816 4 28.9 Weakly correlated
116 ZNF846 4 74.0 Weakly correlated
117 ZFP90 3 99.0 Weakly correlated
118 ZIM2 3 0.0 Weakly correlated
119 ZKSCAN2 3 180.0 Weakly correlated
120 ZNF10 3 99.0 Weakly correlated
121 ZNF135 3 94.0 Weakly correlated
122 ZNF224 3 69.0 Weakly correlated
123 ZNF233 3 99.0 Weakly correlated
124 ZNF253 3 19.6 Weakly correlated
125 ZNF274 3 99.0 Weakly correlated
126 ZNF30 3 94.0 Weakly correlated
127 ZNF383 3 99.0 Weakly correlated
128 ZNF417 3 28.9 Weakly correlated
129 ZNF430 3 19.6 Weakly correlated
130 ZNF433 3 43.0 Weakly correlated
131 ZNF439 3 8.6 Moderately correlated
132 ZNF483 3 99.0 Weakly correlated
133 ZNF484 3 99.0 Weakly correlated
134 ZNF530 3 28.9 Weakly correlated
135 ZNF567 3 99.0 Weakly correlated
136 ZNF569 3 99.0 Weakly correlated
137 ZNF573 3 94.0 Weakly correlated
138 ZNF583 3 99.0 Weakly correlated
139 ZNF616 3 43.0 Weakly correlated
140 ZNF626 3 0.0 Weakly correlated
141 ZNF627 3 74.0 Weakly correlated
142 ZNF675 3 8.6 Moderately correlated
143 ZNF74 3 99.0 Weakly correlated
144 ZNF764 3 160.0 Weakly correlated
145 ZNF782 3 99.0 Weakly correlated
146 ZNF791 3 87.0 Weakly correlated
147 ZNF81 3 99.0 Weakly correlated
148 ZNF823 3 43.0 Weakly correlated
149 ZNF829 3 99.0 Weakly correlated
150 ZNF85 3 28.9 Weakly correlated
151 ZNF891 3 99.0 Weakly correlated
152 ZFP14 2 99.0 Weakly correlated
153 ZFP30 2 99.0 Weakly correlated
154 ZIK1 2 87.0 Weakly correlated
155 ZNF114 2 28.9 Weakly correlated
156 ZNF12 2 99.0 Weakly correlated
157 ZNF177 2 94.0 Weakly correlated
158 ZNF180 2 99.0 Weakly correlated
159 ZNF181 2 94.0 Weakly correlated
160 ZNF19 2 99.0 Weakly correlated
161 ZNF225 2 74.0 Weakly correlated
162 ZNF230 2 28.9 Weakly correlated
163 ZNF234 2 99.0 Weakly correlated
164 ZNF254 2 43.0 Weakly correlated
165 ZNF256 2 74.0 Weakly correlated
166 ZNF267 2 43.0 Weakly correlated
167 ZNF285 2 94.0 Weakly correlated
168 ZNF286A 2 160.0 Weakly correlated
169 ZNF311 2 99.0 Weakly correlated
170 ZNF324B 2 99.0 Weakly correlated
171 ZNF350 2 99.0 Weakly correlated
172 ZNF416 2 43.0 Weakly correlated
173 ZNF419 2 28.9 Weakly correlated
174 ZNF431 2 28.9 Weakly correlated
175 ZNF442 2 43.0 Weakly correlated
176 ZNF445 2 99.0 Weakly correlated
177 ZNF446 2 94.0 Weakly correlated
178 ZNF454 2 99.0 Weakly correlated
179 ZNF461 2 99.0 Weakly correlated
180 ZNF480 2 43.0 Weakly correlated
181 ZNF496 2 99.0 Weakly correlated
182 ZNF500 2 160.0 Weakly correlated
183 ZNF510 2 99.0 Weakly correlated
184 ZNF514 2 94.0 Weakly correlated
185 ZNF540 2 87.0 Weakly correlated
186 ZNF548 2 94.0 Weakly correlated
187 ZNF562 2 28.9 Weakly correlated
188 ZNF565 2 99.0 Weakly correlated
189 ZNF566 2 99.0 Weakly correlated
190 ZNF568 2 99.0 Weakly correlated
191 ZNF586 2 43.0 Weakly correlated
192 ZNF587 2 28.9 Weakly correlated
193 ZNF607 2 43.0 Weakly correlated
194 ZNF615 2 99.0 Weakly correlated
195 ZNF630 2 94.0 Weakly correlated
196 ZNF658 2 99.0 Weakly correlated
197 ZNF669 2 43.0 Weakly correlated
198 ZNF66 2 0.0 Weakly correlated
199 ZNF684 2 99.0 Weakly correlated
200 ZNF700 2 28.9 Weakly correlated
201 ZNF717 2 0.0 Weakly correlated
202 ZNF718 2 19.6 Weakly correlated
203 ZNF726 2 28.9 Weakly correlated
204 ZNF729 2 8.6 Moderately correlated
205 ZNF746 2 99.0 Weakly correlated
206 ZNF747 2 43.0 Weakly correlated
207 ZNF749 2 28.9 Weakly correlated
208 ZNF777 2 319.0 Weakly correlated
209 ZNF77 2 87.0 Weakly correlated
210 ZNF780A 2 43.0 Weakly correlated
211 ZNF785 2 94.0 Weakly correlated
212 ZNF7 2 99.0 Weakly correlated
213 ZNF805 2 99.0 Weakly correlated
214 ZNF813 2 28.9 Weakly correlated
215 ZNF860 2 0.0 Weakly correlated
216 ZNF878 2 43.0 Weakly correlated
217 ZNF879 2 99.0 Weakly correlated
218 ZNF880 2 28.9 Weakly correlated
219 ZNF90 2 8.6 Moderately correlated
220 RBAK 1 99.0 Weakly correlated
221 ZFP28 1 99.0 Weakly correlated
222 ZFP69 1 99.0 Weakly correlated
223 ZFP82 1 99.0 Weakly correlated
224 ZKSCAN3 1 99.0 Weakly correlated
225 ZNF132 1 94.0 Weakly correlated
226 ZNF14 1 69.0 Weakly correlated
227 ZNF184 1 99.0 Weakly correlated
228 ZNF205 1 180.0 Weakly correlated
229 ZNF214 1 99.0 Weakly correlated
230 ZNF215 1 99.0 Weakly correlated
231 ZNF229 1 99.0 Weakly correlated
232 ZNF235 1 99.0 Weakly correlated
233 ZNF25 1 99.0 Weakly correlated
234 ZNF268 1 94.0 Weakly correlated
235 ZNF283 1 99.0 Weakly correlated
236 ZNF300 1 99.0 Weakly correlated
237 ZNF302 1 43.0 Weakly correlated
238 ZNF331 1 94.0 Weakly correlated
239 ZNF33B 1 99.0 Weakly correlated
240 ZNF347 1 43.0 Weakly correlated
241 ZNF34 1 99.0 Weakly correlated
242 ZNF354B 1 99.0 Weakly correlated
243 ZNF37A 1 99.0 Weakly correlated
244 ZNF398 1 99.0 Weakly correlated
245 ZNF3 1 160.0 Weakly correlated
246 ZNF41 1 99.0 Weakly correlated
247 ZNF43 1 43.0 Weakly correlated
248 ZNF440 1 28.9 Weakly correlated
249 ZNF45 1 99.0 Weakly correlated
250 ZNF460 1 74.0 Weakly correlated
251 ZNF473 1 43.0 Weakly correlated
252 ZNF525 1 19.6 Weakly correlated
253 ZNF527 1 99.0 Weakly correlated
254 ZNF543 1 99.0 Weakly correlated
255 ZNF546 1 99.0 Weakly correlated
256 ZNF550 1 94.0 Weakly correlated
257 ZNF563 1 28.9 Weakly correlated
258 ZNF564 1 74.0 Weakly correlated
259 ZNF571 1 99.0 Weakly correlated
260 ZNF578 1 15.2 Highly correlated
261 ZNF57 1 28.9 Weakly correlated
262 ZNF605 1 99.0 Weakly correlated
263 ZNF613 1 99.0 Weakly correlated
264 ZNF614 1 99.0 Weakly correlated
265 ZNF620 1 99.0 Weakly correlated
266 ZNF689 1 99.0 Weakly correlated
267 ZNF699 1 99.0 Weakly correlated
268 ZNF705E 1 0.0 Weakly correlated
269 ZNF705G 1 28.9 Weakly correlated
270 ZNF709 1 87.0 Weakly correlated
271 ZNF716 1 19.6 Weakly correlated
272 ZNF730 1 19.6 Weakly correlated
273 ZNF761 1 19.6 Weakly correlated
274 ZNF763 1 15.2 Highly correlated
275 ZNF772 1 94.0 Weakly correlated
276 ZNF776 1 43.0 Weakly correlated
277 ZNF789 1 99.0 Weakly correlated
278 ZNF799 1 43.0 Weakly correlated
279 ZNF814 1 0.0 Weakly correlated
280 ZNF845 1 28.9 Weakly correlated
281 ZNF850 1 28.9 Weakly correlated
282 ZNF852 1 94.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 281 99.0 Weakly correlated
2 ZNF84 250 99.0 Weakly correlated
3 ZNF649 245 28.9 Weakly correlated
4 ZNF486 193 8.6 Moderately correlated
5 ZNF141 161 43.0 Weakly correlated
6 ZNF92 50 28.9 Weakly correlated
7 ZNF560 36 43.0 Weakly correlated
8 ZNF425 24 94.0 Weakly correlated
9 ZNF136 22 74.0 Weakly correlated
10 ZNF28 21 28.9 Weakly correlated
11 ZFP69B 19 99.0 Weakly correlated
12 ZNF17 18 69.0 Weakly correlated
13 ZNF2 17 99.0 Weakly correlated
14 ZNF317 17 99.0 Weakly correlated
15 ZNF33A 16 99.0 Weakly correlated
16 ZIM3 15 87.0 Weakly correlated
17 ZNF490 14 43.0 Weakly correlated
18 ZNF343 12 74.0 Weakly correlated
19 ZNF91 12 6.0 Moderately correlated
20 ZNF263 10 180.0 Weakly correlated
21 ZNF18 10 160.0 Weakly correlated
22 ZNF394 10 99.0 Weakly correlated
23 ZFP57 9 87.0 Weakly correlated
24 ZNF765 9 8.6 Moderately correlated
25 ZNF140 8 99.0 Weakly correlated
26 ZNF93 8 8.6 Moderately correlated
27 ZNF101 7 43.0 Weakly correlated
28 ZNF528 6 43.0 Weakly correlated
29 ZNF792 6 94.0 Weakly correlated
30 ZNF558 6 99.0 Weakly correlated
31 ZNF354A 5 99.0 Weakly correlated
32 ZNF723 5 15.2 Highly correlated
33 ZNF679 5 28.9 Weakly correlated
34 ZNF793 5 99.0 Weakly correlated
35 ZKSCAN5 4 160.0 Weakly correlated
36 ZNF534 4 19.6 Weakly correlated
37 ZNF701 4 28.9 Weakly correlated
38 ZNF735 4 28.9 Weakly correlated
39 ZNF75D 4 94.0 Weakly correlated
40 ZNF264 4 99.0 Weakly correlated
41 ZNF479 3 6.4 Moderately correlated
42 ZNF677 3 99.0 Weakly correlated
43 ZNF324 3 99.0 Weakly correlated
44 ZNF674 3 99.0 Weakly correlated
45 ZNF671 3 94.0 Weakly correlated
46 ZNF251 3 94.0 Weakly correlated
47 ZNF202 3 160.0 Weakly correlated
48 ZNF248 3 99.0 Weakly correlated
49 ZNF680 3 28.9 Weakly correlated
50 ZFP37 2 99.0 Weakly correlated
51 ZNF695 2 28.9 Weakly correlated
52 ZNF287 2 99.0 Weakly correlated
53 ZNF471 2 94.0 Weakly correlated
54 ZNF641 2 99.0 Weakly correlated
55 ZNF257 2 0.0 Weakly correlated
56 ZNF707 2 74.0 Weakly correlated
57 ZNF337 2 43.0 Weakly correlated
58 ZNF585B 2 99.0 Weakly correlated
59 ZNF85 2 28.9 Weakly correlated
60 ZFP28 1 99.0 Weakly correlated
61 ZFP82 1 99.0 Weakly correlated
62 ZFP90 1 99.0 Weakly correlated
63 ZKSCAN1 1 160.0 Weakly correlated
64 ZNF10 1 99.0 Weakly correlated
65 ZNF133 1 99.0 Weakly correlated
66 ZNF135 1 94.0 Weakly correlated
67 ZNF157 1 99.0 Weakly correlated
68 ZNF180 1 99.0 Weakly correlated
69 ZNF211 1 94.0 Weakly correlated
70 ZNF468 1 28.9 Weakly correlated
71 ZNF878 1 43.0 Weakly correlated
72 ZNF253 1 19.6 Weakly correlated
73 ZNF484 1 99.0 Weakly correlated
74 ZNF519 1 19.6 Weakly correlated
75 ZNF559 1 74.0 Weakly correlated
76 ZNF563 1 28.9 Weakly correlated
77 ZNF658 1 99.0 Weakly correlated
78 ZNF682 1 28.9 Weakly correlated
79 ZNF766 1 43.0 Weakly correlated
80 ZNF177 1 94.0 Weakly correlated
81 ZNF334 1 99.0 Weakly correlated
82 ZNF433 1 43.0 Weakly correlated
83 ZNF585A 1 99.0 Weakly correlated
84 ZNF730 1 19.6 Weakly correlated
85 ZNF846 1 74.0 Weakly correlated
86 ZNF485 1 94.0 Weakly correlated
87 ZNF573 1 94.0 Weakly correlated
88 ZNF66 1 0.0 Weakly correlated
89 ZNF705G 1 28.9 Weakly correlated
90 ZNF429 1 28.9 Weakly correlated
91 ZNF483 1 99.0 Weakly correlated
92 ZNF589 1 28.9 Weakly correlated
93 ZNF8 1 99.0 Weakly correlated
94 ZFP14 1 99.0 Weakly correlated
95 ZNF302 1 43.0 Weakly correlated
96 ZNF418 1 43.0 Weakly correlated
97 ZNF610 1 28.9 Weakly correlated
98 ZNF717 1 0.0 Weakly correlated
99 ZNF77 1 87.0 Weakly correlated
100 ZNF813 1 28.9 Weakly correlated
101 ZNF300 1 99.0 Weakly correlated
102 ZNF440 1 28.9 Weakly correlated
103 ZNF747 1 43.0 Weakly correlated
104 ZNF845 1 28.9 Weakly correlated
105 ZNF160 1 74.0 Weakly correlated
106 ZNF587 1 28.9 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZFP57 87.0 Weakly correlated
2 ZFP69B 99.0 Weakly correlated
3 ZNF141 43.0 Weakly correlated
4 ZNF343 74.0 Weakly correlated
5 ZNF486 8.6 Moderately correlated
6 ZNF528 43.0 Weakly correlated
7 ZNF84 99.0 Weakly correlated
8 ZNF92 28.9 Weakly correlated