ZRdb KZFP & Repeats
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LINE_L1PA17_3END

  • Name
    L1PA17_3END
  • Repbase
    No find
  • Type
    LINE
  • Emergence
    74.0 Mya
  • Dfam Id
    DF0000337
Description :

Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
ctaatatccagaatctataaggaacttaaacaaatcaacaagaaaaaaacaaataaccccattaaaaagtgggcaaaggacatgaacagacacttctcaaaagaagacatacaagcggccaacaaacatatgaaaaaatgctcaacatcactaatcatcagagaaatgcaaatcaaaaccacaatgagataccatctcacaccagtcagaatggctattattaaaaagtcaaaaaataacagatgttggcgaggntgcggagaaaagggaacgcttatacactgttggtgggaatgtaaattagttcagcccctgtggaaagcagtttggagatttctcaaagaactaaaaatagaactaccattcgacccagcaatcccattactgggtatatacccaaaggaaaataaatcgttctaccaaaaagacacctgcactcgtatgtttatcgcagcactattcacaatagcaaagacatggaatcaacctaggtgcccatcaacggtggattggataaagaaaatgtggtacatatacaccatggaatactacgcagccataaaaaagaacgaaatcatgtcctttgcagcaacatggatgcagctggaggccattatcctaagcgaattaacgcagaaacagaaaaccaaataccgcatgttctcacttataagtgggagctaaacantgggtacacacggacataaagatgggaacaatagacactggggactccaaaaggggggagggagggaggggggcaagggttgaaaaactacctattgggtactatgttcactatttgggtgacgggntcantagaagcccaaacctcagcatcacgcaatatacccatgtaacaaacctgcacatgtaccccctgaatctaaaataaaaattgaaaaaaaaaaaa
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 359 99.0 Weakly correlated
2 ZNF486 184 8.6 Weakly correlated
3 ZNF317 112 99.0 Weakly correlated
4 ZNF92 108 28.9 Weakly correlated
5 ZIM3 106 87.0 Weakly correlated
6 ZNF84 79 99.0 Weakly correlated
7 ZNF705B 74 28.9 Weakly correlated
8 ZNF705D 66 28.9 Weakly correlated
9 ZNF263 58 180.0 Weakly correlated
10 ZNF490 48 43.0 Weakly correlated
11 ZNF766 47 43.0 Weakly correlated
12 ZNF8 47 99.0 Weakly correlated
13 ZNF534 43 19.6 Weakly correlated
14 ZNF2 42 99.0 Weakly correlated
15 ZNF479 42 6.4 Weakly correlated
16 ZNF230 40 28.9 Weakly correlated
17 ZNF679 40 28.9 Weakly correlated
18 ZNF394 38 99.0 Weakly correlated
19 ZNF793 38 99.0 Weakly correlated
20 ZNF160 34 74.0 Highly correlated
21 ZNF429 34 28.9 Weakly correlated
22 ZNF680 34 28.9 Weakly correlated
23 ZNF18 29 160.0 Weakly correlated
24 ZNF337 28 43.0 Weakly correlated
25 ZNF248 27 99.0 Weakly correlated
26 ZNF547 25 74.0 Highly correlated
27 ZFP37 22 99.0 Weakly correlated
28 ZNF251 22 94.0 Weakly correlated
29 ZKSCAN1 20 160.0 Weakly correlated
30 ZNF528 19 43.0 Weakly correlated
31 ZNF723 17 15.2 Weakly correlated
32 ZFP57 16 87.0 Weakly correlated
33 ZNF320 16 28.9 Weakly correlated
34 ZNF558 16 99.0 Weakly correlated
35 ZNF101 15 43.0 Weakly correlated
36 ZNF485 15 94.0 Weakly correlated
37 ZNF471 14 94.0 Weakly correlated
38 ZNF133 13 99.0 Weakly correlated
39 ZNF701 13 28.9 Weakly correlated
40 ZNF182 12 99.0 Weakly correlated
41 ZNF274 12 99.0 Weakly correlated
42 ZNF222 11 43.0 Weakly correlated
43 ZNF28 11 28.9 Weakly correlated
44 ZNF324 11 99.0 Weakly correlated
45 ZNF610 10 28.9 Weakly correlated
46 ZNF506 9 28.9 Weakly correlated
47 ZFP69B 8 99.0 Weakly correlated
48 ZNF175 8 94.0 Weakly correlated
49 ZNF136 7 74.0 Highly correlated
50 ZNF140 7 99.0 Weakly correlated
51 ZNF141 7 43.0 Weakly correlated
52 ZNF169 7 94.0 Weakly correlated
53 ZNF197 7 99.0 Weakly correlated
54 ZNF519 7 19.6 Weakly correlated
55 ZNF682 7 28.9 Weakly correlated
56 ZNF735 7 28.9 Weakly correlated
57 ZNF792 7 94.0 Weakly correlated
58 ZKSCAN8 6 160.0 Weakly correlated
59 ZNF250 6 99.0 Weakly correlated
60 ZNF441 6 43.0 Weakly correlated
61 ZNF585A 6 99.0 Weakly correlated
62 ZNF786 6 99.0 Weakly correlated
63 ZNF425 5 94.0 Weakly correlated
64 ZNF589 5 28.9 Weakly correlated
65 ZNF597 5 94.0 Weakly correlated
66 ZNF695 5 28.9 Weakly correlated
67 ZNF17 4 69.0 Moderately correlated
68 ZNF33A 4 99.0 Weakly correlated
69 ZNF549 4 87.0 Weakly correlated
70 ZNF707 4 74.0 Highly correlated
71 ZNF75D 4 94.0 Weakly correlated
72 ZNF823 4 43.0 Weakly correlated
73 ZNF879 4 99.0 Weakly correlated
74 ZNF93 4 8.6 Weakly correlated
75 ZNF10 3 99.0 Weakly correlated
76 ZNF264 3 99.0 Weakly correlated
77 ZNF43 3 43.0 Weakly correlated
78 ZNF44 3 43.0 Weakly correlated
79 ZNF584 3 99.0 Weakly correlated
80 ZNF641 3 99.0 Weakly correlated
81 ZNF677 3 99.0 Weakly correlated
82 ZNF778 3 74.0 Highly correlated
83 ZNF81 3 99.0 Weakly correlated
84 ZIK1 2 87.0 Weakly correlated
85 ZNF114 2 28.9 Weakly correlated
86 ZNF257 2 0.0 Weakly correlated
87 ZNF282 2 319.0 Weakly correlated
88 ZNF287 2 99.0 Weakly correlated
89 ZNF331 2 94.0 Weakly correlated
90 ZNF41 2 99.0 Weakly correlated
91 ZNF468 2 28.9 Weakly correlated
92 ZNF527 2 99.0 Weakly correlated
93 ZNF554 2 99.0 Weakly correlated
94 ZNF583 2 99.0 Weakly correlated
95 ZNF727 2 19.6 Weakly correlated
96 ZNF730 2 19.6 Weakly correlated
97 ZNF799 2 43.0 Weakly correlated
98 RBAK 1 99.0 Weakly correlated
99 ZFP1 1 99.0 Weakly correlated
100 ZFP28 1 99.0 Weakly correlated
101 ZFP30 1 99.0 Weakly correlated
102 ZFP90 1 99.0 Weakly correlated
103 ZNF124 1 43.0 Weakly correlated
104 ZNF135 1 94.0 Weakly correlated
105 ZNF177 1 94.0 Weakly correlated
106 ZNF223 1 43.0 Weakly correlated
107 ZNF225 1 74.0 Highly correlated
108 ZNF253 1 19.6 Weakly correlated
109 ZNF26 1 99.0 Weakly correlated
110 ZNF273 1 28.9 Weakly correlated
111 ZNF284 1 43.0 Weakly correlated
112 ZNF334 1 99.0 Weakly correlated
113 ZNF347 1 43.0 Weakly correlated
114 ZNF354A 1 99.0 Weakly correlated
115 ZNF440 1 28.9 Weakly correlated
116 ZNF483 1 99.0 Weakly correlated
117 ZNF530 1 28.9 Weakly correlated
118 ZNF559 1 74.0 Highly correlated
119 ZNF560 1 43.0 Weakly correlated
120 ZNF561 1 43.0 Weakly correlated
121 ZNF563 1 28.9 Weakly correlated
122 ZNF567 1 99.0 Weakly correlated
123 ZNF585B 1 99.0 Weakly correlated
124 ZNF620 1 99.0 Weakly correlated
125 ZNF624 1 99.0 Weakly correlated
126 ZNF630 1 94.0 Weakly correlated
127 ZNF671 1 94.0 Weakly correlated
128 ZNF689 1 99.0 Weakly correlated
129 ZNF747 1 43.0 Weakly correlated
130 ZNF816 1 28.9 Weakly correlated
131 ZNF846 1 74.0 Highly correlated
132 ZNF85 1 28.9 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF486 136 8.6 Weakly correlated
2 ZNF84 72 99.0 Weakly correlated
3 ZNF382 68 99.0 Weakly correlated
4 ZNF92 68 28.9 Weakly correlated
5 ZIM3 65 87.0 Weakly correlated
6 ZNF8 38 99.0 Weakly correlated
7 ZNF490 38 43.0 Weakly correlated
8 ZNF534 34 19.6 Weakly correlated
9 ZNF160 33 74.0 Highly correlated
10 ZNF705B 32 28.9 Weakly correlated
11 ZNF705D 28 28.9 Weakly correlated
12 ZNF248 25 99.0 Weakly correlated
13 ZNF337 25 43.0 Weakly correlated
14 ZNF317 24 99.0 Weakly correlated
15 ZNF479 22 6.4 Weakly correlated
16 ZNF429 21 28.9 Weakly correlated
17 ZNF793 20 99.0 Weakly correlated
18 ZNF680 16 28.9 Weakly correlated
19 ZNF263 11 180.0 Weakly correlated
20 ZNF471 11 94.0 Weakly correlated
21 ZNF485 11 94.0 Weakly correlated
22 ZNF2 10 99.0 Weakly correlated
23 ZNF723 9 15.2 Weakly correlated
24 ZNF133 9 99.0 Weakly correlated
25 ZFP57 8 87.0 Weakly correlated
26 ZNF766 8 43.0 Weakly correlated
27 ZNF558 7 99.0 Weakly correlated
28 ZNF320 7 28.9 Weakly correlated
29 ZNF101 7 43.0 Weakly correlated
30 ZNF324 6 99.0 Weakly correlated
31 ZNF506 6 28.9 Weakly correlated
32 ZNF250 6 99.0 Weakly correlated
33 ZNF136 5 74.0 Highly correlated
34 ZNF679 5 28.9 Weakly correlated
35 ZNF18 5 160.0 Weakly correlated
36 ZNF28 4 28.9 Weakly correlated
37 ZNF735 4 28.9 Weakly correlated
38 ZNF230 4 28.9 Weakly correlated
39 ZNF879 4 99.0 Weakly correlated
40 ZNF141 4 43.0 Weakly correlated
41 ZNF585A 3 99.0 Weakly correlated
42 ZNF75D 3 94.0 Weakly correlated
43 ZNF677 3 99.0 Weakly correlated
44 ZKSCAN1 3 160.0 Weakly correlated
45 ZNF10 3 99.0 Weakly correlated
46 ZNF140 3 99.0 Weakly correlated
47 ZNF169 3 94.0 Weakly correlated
48 ZNF528 3 43.0 Weakly correlated
49 ZNF81 3 99.0 Weakly correlated
50 ZNF695 3 28.9 Weakly correlated
51 ZNF707 3 74.0 Highly correlated
52 ZNF786 3 99.0 Weakly correlated
53 ZNF792 3 94.0 Weakly correlated
54 ZNF701 2 28.9 Weakly correlated
55 ZNF641 2 99.0 Weakly correlated
56 ZNF287 2 99.0 Weakly correlated
57 ZNF468 2 28.9 Weakly correlated
58 ZNF610 1 28.9 Weakly correlated
59 ZNF561 1 43.0 Weakly correlated
60 ZNF519 1 19.6 Weakly correlated
61 ZNF530 1 28.9 Weakly correlated
62 ZNF44 1 43.0 Weakly correlated
63 ZNF257 1 0.0 Weakly correlated
64 ZNF589 1 28.9 Weakly correlated
65 ZNF225 1 74.0 Highly correlated
66 ZFP28 1 99.0 Weakly correlated
67 ZFP90 1 99.0 Weakly correlated
68 ZKSCAN8 1 160.0 Weakly correlated
69 ZNF441 1 43.0 Weakly correlated
70 ZNF175 1 94.0 Weakly correlated
71 ZNF584 1 99.0 Weakly correlated
72 ZNF671 1 94.0 Weakly correlated
73 ZNF114 1 28.9 Weakly correlated
74 ZNF222 1 43.0 Weakly correlated
75 ZNF567 1 99.0 Weakly correlated
76 ZFP1 1 99.0 Weakly correlated
77 ZNF33A 1 99.0 Weakly correlated
78 ZNF549 1 87.0 Weakly correlated
79 ZNF823 1 43.0 Weakly correlated
80 ZNF264 1 99.0 Weakly correlated
81 ZNF347 1 43.0 Weakly correlated
82 ZNF483 1 99.0 Weakly correlated
83 ZNF251 1 94.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZFP57 87.0 Weakly correlated
2 ZNF263 180.0 Weakly correlated
3 ZNF2 99.0 Weakly correlated
4 ZNF317 99.0 Weakly correlated
5 ZNF429 28.9 Weakly correlated
6 ZNF486 8.6 Weakly correlated
7 ZNF680 28.9 Weakly correlated
8 ZNF705B 28.9 Weakly correlated
9 ZNF793 99.0 Weakly correlated
10 ZNF84 99.0 Weakly correlated
11 ZNF8 99.0 Weakly correlated
12 ZNF92 28.9 Weakly correlated