ZRdb KZFP & Repeats
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LINE_L1PA16_3END

  • Name
    L1PA16_3END
  • Repbase
    L1PA16
  • Type
    LINE
  • Emergence
    74.0 Mya
  • Dfam Id
    DF0000336
Description :

ORF2 ends at bp ~684
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
ctaatatccagaatctataaggaacttaaacaattcaacaagcaaaaaacaaataaccccattaaaaagtgggcaaaggacatgaacagacacttctcaaaagaagacatacaagcggccaacaaacatatgaaaaaatgctcaacatcactaatcatcagagaaatgcaaatcaaaaccacaatgagataccatctcacaccagtcagaatggctattattaaaaagtcaaaaaacaacagatgctggcgaggctgcggagaaaagggaacgcttatacactgttggtgggaatgtaaattagttcagccactgtggaaagcagtttggagatttctcaaagaacttaaaacagaactaccattcgacccagcaatcccattactgggtatatacccaaaggaaaataaatcgttctaccaaaaagacacatgcactcgtatgttcatcgcagcactattcacaatagcaaagacatggaatcaacctaggtgcccatcaacggtggattggataaagaaaatgtggtacatatacaccatggaatactacgcagccataaaaaagaacgaaatcatgtcctttgcagcaacatggatgcagctggaggccattatcctaagcgaattaacgcaggaacagaaaaccaaataccgcatgttctcacttataagtgggagctaaacattgggtacncatggacataaagatgggaacaatagacactggggactactagaggggggagggagggaggggggcaagggttgaaaaactacctattgggtactatgctcactacctgggtgacgggatcattcgtaccccaaacctcagcatcacgcaatatacccatgtaacaaacctgcacatgtaccccctgaatctaaaataaaagttgaaaaaaaaaaaa
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 1117 99.0 Weakly correlated
2 ZNF486 722 8.6 Weakly correlated
3 ZNF92 719 28.9 Weakly correlated
4 ZNF84 651 99.0 Weakly correlated
5 ZNF317 305 99.0 Weakly correlated
6 ZNF429 237 28.9 Weakly correlated
7 ZIM3 214 87.0 Weakly correlated
8 ZNF705B 167 28.9 Weakly correlated
9 ZNF490 155 43.0 Weakly correlated
10 ZNF263 143 180.0 Weakly correlated
11 ZNF8 139 99.0 Weakly correlated
12 ZNF679 127 28.9 Weakly correlated
13 ZNF394 106 99.0 Weakly correlated
14 ZNF705D 106 28.9 Weakly correlated
15 ZNF793 103 99.0 Weakly correlated
16 ZNF680 101 28.9 Weakly correlated
17 ZNF2 89 99.0 Weakly correlated
18 ZNF766 84 43.0 Weakly correlated
19 ZNF534 82 19.6 Weakly correlated
20 ZNF723 78 15.2 Weakly correlated
21 ZNF160 72 74.0 Highly correlated
22 ZNF133 70 99.0 Weakly correlated
23 ZNF479 69 6.4 Weakly correlated
24 ZNF248 58 99.0 Weakly correlated
25 ZKSCAN1 50 160.0 Weakly correlated
26 ZNF337 50 43.0 Weakly correlated
27 ZFP37 48 99.0 Weakly correlated
28 ZNF101 43 43.0 Weakly correlated
29 ZNF558 43 99.0 Weakly correlated
30 ZNF251 37 94.0 Weakly correlated
31 ZFP57 32 87.0 Weakly correlated
32 ZNF274 30 99.0 Weakly correlated
33 ZNF230 27 28.9 Weakly correlated
34 ZFP69B 26 99.0 Weakly correlated
35 ZNF140 26 99.0 Weakly correlated
36 ZNF222 25 43.0 Weakly correlated
37 ZNF320 25 28.9 Weakly correlated
38 ZNF485 25 94.0 Weakly correlated
39 ZNF701 25 28.9 Weakly correlated
40 ZNF610 23 28.9 Weakly correlated
41 ZNF182 22 99.0 Weakly correlated
42 ZNF197 22 99.0 Weakly correlated
43 ZNF528 22 43.0 Weakly correlated
44 ZNF786 22 99.0 Weakly correlated
45 ZNF18 20 160.0 Weakly correlated
46 ZNF506 20 28.9 Weakly correlated
47 ZNF223 19 43.0 Weakly correlated
48 ZNF28 19 28.9 Weakly correlated
49 ZNF324 19 99.0 Weakly correlated
50 ZNF589 19 28.9 Weakly correlated
51 ZNF257 17 0.0 Weakly correlated
52 ZNF547 16 74.0 Highly correlated
53 ZNF585A 16 99.0 Weakly correlated
54 ZNF75D 16 94.0 Weakly correlated
55 ZNF584 15 99.0 Weakly correlated
56 ZNF175 14 94.0 Weakly correlated
57 ZNF136 13 74.0 Highly correlated
58 ZNF250 13 99.0 Weakly correlated
59 ZNF347 13 43.0 Weakly correlated
60 ZNF141 12 43.0 Weakly correlated
61 ZNF202 12 160.0 Weakly correlated
62 ZNF441 12 43.0 Weakly correlated
63 ZNF695 12 28.9 Weakly correlated
64 ZKSCAN8 11 160.0 Weakly correlated
65 ZNF471 11 94.0 Weakly correlated
66 ZNF483 11 99.0 Weakly correlated
67 ZNF597 10 94.0 Weakly correlated
68 ZFP28 9 99.0 Weakly correlated
69 ZNF287 9 99.0 Weakly correlated
70 ZNF425 9 94.0 Weakly correlated
71 ZNF554 9 99.0 Weakly correlated
72 ZNF568 9 99.0 Weakly correlated
73 ZNF585B 9 99.0 Weakly correlated
74 ZNF677 9 99.0 Weakly correlated
75 ZNF26 8 99.0 Weakly correlated
76 ZNF808 8 19.6 Weakly correlated
77 ZFP30 7 99.0 Weakly correlated
78 ZNF211 7 94.0 Weakly correlated
79 ZNF334 7 99.0 Weakly correlated
80 ZNF33A 7 99.0 Weakly correlated
81 ZNF468 7 28.9 Weakly correlated
82 ZNF169 6 94.0 Weakly correlated
83 ZNF823 6 43.0 Weakly correlated
84 ZNF114 5 28.9 Weakly correlated
85 ZNF440 5 28.9 Weakly correlated
86 ZNF519 5 19.6 Weakly correlated
87 ZNF735 5 28.9 Weakly correlated
88 ZNF879 5 99.0 Weakly correlated
89 ZFP90 4 99.0 Weakly correlated
90 ZNF264 4 99.0 Weakly correlated
91 ZNF331 4 94.0 Weakly correlated
92 ZNF44 4 43.0 Weakly correlated
93 ZNF567 4 99.0 Weakly correlated
94 ZNF583 4 99.0 Weakly correlated
95 ZNF616 4 43.0 Weakly correlated
96 ZNF641 4 99.0 Weakly correlated
97 ZNF707 4 74.0 Highly correlated
98 ZNF792 4 94.0 Weakly correlated
99 ZNF10 3 99.0 Weakly correlated
100 ZNF135 3 94.0 Weakly correlated
101 ZNF354A 3 99.0 Weakly correlated
102 ZNF41 3 99.0 Weakly correlated
103 ZNF433 3 43.0 Weakly correlated
104 ZNF43 3 43.0 Weakly correlated
105 ZNF549 3 87.0 Weakly correlated
106 ZNF765 3 8.6 Weakly correlated
107 ZNF189 2 99.0 Weakly correlated
108 ZNF224 2 69.0 Moderately correlated
109 ZNF284 2 43.0 Weakly correlated
110 ZNF354C 2 99.0 Weakly correlated
111 ZNF419 2 28.9 Weakly correlated
112 ZNF454 2 99.0 Weakly correlated
113 ZNF510 2 99.0 Weakly correlated
114 ZNF530 2 28.9 Weakly correlated
115 ZNF559 2 74.0 Highly correlated
116 ZNF563 2 28.9 Weakly correlated
117 ZNF586 2 43.0 Weakly correlated
118 ZNF587 2 28.9 Weakly correlated
119 ZNF605 2 99.0 Weakly correlated
120 ZNF611 2 19.6 Weakly correlated
121 ZNF627 2 74.0 Highly correlated
122 ZNF649 2 28.9 Weakly correlated
123 ZNF675 2 8.6 Weakly correlated
124 ZNF682 2 28.9 Weakly correlated
125 ZNF705E 2 0.0 Weakly correlated
126 ZNF81 2 99.0 Weakly correlated
127 ZFP82 1 99.0 Weakly correlated
128 ZIK1 1 87.0 Weakly correlated
129 ZNF100 1 28.9 Weakly correlated
130 ZNF157 1 99.0 Weakly correlated
131 ZNF17 1 69.0 Moderately correlated
132 ZNF19 1 99.0 Weakly correlated
133 ZNF225 1 74.0 Highly correlated
134 ZNF253 1 19.6 Weakly correlated
135 ZNF267 1 43.0 Weakly correlated
136 ZNF273 1 28.9 Weakly correlated
137 ZNF282 1 319.0 Weakly correlated
138 ZNF302 1 43.0 Weakly correlated
139 ZNF350 1 99.0 Weakly correlated
140 ZNF45 1 99.0 Weakly correlated
141 ZNF543 1 99.0 Weakly correlated
142 ZNF550 1 94.0 Weakly correlated
143 ZNF555 1 94.0 Weakly correlated
144 ZNF560 1 43.0 Weakly correlated
145 ZNF562 1 28.9 Weakly correlated
146 ZNF566 1 99.0 Weakly correlated
147 ZNF573 1 94.0 Weakly correlated
148 ZNF613 1 99.0 Weakly correlated
149 ZNF674 1 99.0 Weakly correlated
150 ZNF700 1 28.9 Weakly correlated
151 ZNF736 1 43.0 Weakly correlated
152 ZNF747 1 43.0 Weakly correlated
153 ZNF75A 1 94.0 Weakly correlated
154 ZNF777 1 319.0 Weakly correlated
155 ZNF778 1 74.0 Highly correlated
156 ZNF789 1 99.0 Weakly correlated
157 ZNF813 1 28.9 Weakly correlated
158 ZNF85 1 28.9 Weakly correlated
159 ZNF91 1 6.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF84 624 99.0 Weakly correlated
2 ZNF92 571 28.9 Weakly correlated
3 ZNF486 541 8.6 Weakly correlated
4 ZNF382 229 99.0 Weakly correlated
5 ZNF429 185 28.9 Weakly correlated
6 ZIM3 140 87.0 Weakly correlated
7 ZNF490 136 43.0 Weakly correlated
8 ZNF8 123 99.0 Weakly correlated
9 ZNF263 62 180.0 Weakly correlated
10 ZNF160 61 74.0 Highly correlated
11 ZNF705B 58 28.9 Weakly correlated
12 ZNF705D 56 28.9 Weakly correlated
13 ZNF248 56 99.0 Weakly correlated
14 ZNF534 53 19.6 Weakly correlated
15 ZNF337 46 43.0 Weakly correlated
16 ZNF723 43 15.2 Weakly correlated
17 ZNF317 41 99.0 Weakly correlated
18 ZNF133 35 99.0 Weakly correlated
19 ZNF479 33 6.4 Weakly correlated
20 ZNF680 27 28.9 Weakly correlated
21 ZNF793 23 99.0 Weakly correlated
22 ZNF101 21 43.0 Weakly correlated
23 ZNF2 21 99.0 Weakly correlated
24 ZNF786 17 99.0 Weakly correlated
25 ZFP57 16 87.0 Weakly correlated
26 ZNF485 14 94.0 Weakly correlated
27 ZNF140 13 99.0 Weakly correlated
28 ZNF250 13 99.0 Weakly correlated
29 ZNF766 12 43.0 Weakly correlated
30 ZNF506 10 28.9 Weakly correlated
31 ZKSCAN1 9 160.0 Weakly correlated
32 ZNF136 9 74.0 Highly correlated
33 ZNF677 9 99.0 Weakly correlated
34 ZNF471 9 94.0 Weakly correlated
35 ZNF585A 9 99.0 Weakly correlated
36 ZNF558 9 99.0 Weakly correlated
37 ZNF287 7 99.0 Weakly correlated
38 ZNF75D 7 94.0 Weakly correlated
39 ZNF251 7 94.0 Weakly correlated
40 ZNF28 7 28.9 Weakly correlated
41 ZNF394 7 99.0 Weakly correlated
42 ZNF701 7 28.9 Weakly correlated
43 ZNF257 6 0.0 Weakly correlated
44 ZNF695 6 28.9 Weakly correlated
45 ZNF347 6 43.0 Weakly correlated
46 ZNF568 6 99.0 Weakly correlated
47 ZNF141 5 43.0 Weakly correlated
48 ZNF610 5 28.9 Weakly correlated
49 ZNF324 5 99.0 Weakly correlated
50 ZNF468 4 28.9 Weakly correlated
51 ZNF320 4 28.9 Weakly correlated
52 ZNF44 4 43.0 Weakly correlated
53 ZNF567 4 99.0 Weakly correlated
54 ZNF202 4 160.0 Weakly correlated
55 ZFP90 3 99.0 Weakly correlated
56 ZNF169 3 94.0 Weakly correlated
57 ZNF211 3 94.0 Weakly correlated
58 ZNF528 3 43.0 Weakly correlated
59 ZNF433 3 43.0 Weakly correlated
60 ZNF679 3 28.9 Weakly correlated
61 ZNF26 3 99.0 Weakly correlated
62 ZNF735 3 28.9 Weakly correlated
63 ZNF18 3 160.0 Weakly correlated
64 ZNF354A 3 99.0 Weakly correlated
65 ZNF823 3 43.0 Weakly correlated
66 ZNF10 2 99.0 Weakly correlated
67 ZNF616 2 43.0 Weakly correlated
68 ZNF230 2 28.9 Weakly correlated
69 ZNF440 2 28.9 Weakly correlated
70 ZNF530 2 28.9 Weakly correlated
71 ZNF587 2 28.9 Weakly correlated
72 ZNF483 2 99.0 Weakly correlated
73 ZNF331 2 94.0 Weakly correlated
74 ZNF33A 2 99.0 Weakly correlated
75 ZNF792 2 94.0 Weakly correlated
76 ZNF175 2 94.0 Weakly correlated
77 ZNF597 2 94.0 Weakly correlated
78 ZFP28 1 99.0 Weakly correlated
79 ZFP37 1 99.0 Weakly correlated
80 ZFP82 1 99.0 Weakly correlated
81 ZIK1 1 87.0 Weakly correlated
82 ZKSCAN8 1 160.0 Weakly correlated
83 ZNF223 1 43.0 Weakly correlated
84 ZNF549 1 87.0 Weakly correlated
85 ZNF189 1 99.0 Weakly correlated
86 ZNF585B 1 99.0 Weakly correlated
87 ZNF707 1 74.0 Highly correlated
88 ZNF789 1 99.0 Weakly correlated
89 ZNF274 1 99.0 Weakly correlated
90 ZNF222 1 43.0 Weakly correlated
91 ZNF225 1 74.0 Highly correlated
92 ZNF43 1 43.0 Weakly correlated
93 ZNF605 1 99.0 Weakly correlated
94 ZNF264 1 99.0 Weakly correlated
95 ZNF808 1 19.6 Weakly correlated
96 ZNF879 1 99.0 Weakly correlated
97 ZNF573 1 94.0 Weakly correlated
98 ZNF649 1 28.9 Weakly correlated
99 ZNF765 1 8.6 Weakly correlated
100 ZNF81 1 99.0 Weakly correlated
101 ZNF550 1 94.0 Weakly correlated
102 ZNF641 1 99.0 Weakly correlated
103 ZNF777 1 319.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZFP57 87.0 Weakly correlated
2 ZNF248 99.0 Weakly correlated
3 ZNF263 180.0 Weakly correlated
4 ZNF28 28.9 Weakly correlated
5 ZNF2 99.0 Weakly correlated
6 ZNF317 99.0 Weakly correlated
7 ZNF429 28.9 Weakly correlated
8 ZNF486 8.6 Weakly correlated
9 ZNF677 99.0 Weakly correlated
10 ZNF680 28.9 Weakly correlated
11 ZNF695 28.9 Weakly correlated
12 ZNF705B 28.9 Weakly correlated
13 ZNF84 99.0 Weakly correlated
14 ZNF92 28.9 Weakly correlated