ZRdb KZFP & Repeats
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LINE_L1PA15_3END

  • Name
    L1PA15_3END
  • Repbase
    L1PA15
  • Type
    LINE
  • Emergence
    74.0 Mya
  • Dfam Id
    DF0000335
Description :

ORF2 ends at bp ~684
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
ctaatatccagaatctataaggaacttaaacaaattaacaagcaaaaaacaaacaaccccattaaaaagtgggcaaaggacatgaacagacacttttcaaaagaagacatacacgcggccaacaagcatatgaaaaaatgctcaacatcactaatcattagagaaatgcaaatcaaaaccacaatgagataccatctcacaccagtcagaatggctattattaaaaagtcaaaaaataacagatgctggcgaggttgcggagaaaagggaacgcttatacactgctggtgggaatgtaaattagttcagccactgtggaaagcagtttggcgatttctcaaagaacttaaaacagaactaccattcgacccagcaatcccattattgggtatatacccaaaggaatataaatcgttctaccataaagacacatgcacgcgtatgttcatcgcagcactattcacaatagcaaagacatggaatcaacctaaatgcccatcaacggtagactggataaagaaaatgtggtacatatacaccatggaatactacgcagccataaaaaagaacgagatcatgtcctttgcagcaacatggatggagctggaggccattatcctaagcgaactaacgcaggaacagaaaaccaaataccgcatgttctcacttataagtgggagctaaacattgagtacacatggacacaaagaagggaacaacagacaccggggcctacttgagggtggagggtgggaggagggtgaggatcgaaaaactacctatcgggtactatgcttattacctgggtgacgaaataatctgtacaccaaacccccgtgacacgcaatttacctatataacaaacctgcacatgtacccctgaacctaaaataaaagttaaaaaaaaaaaaa
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 1168 99.0 Weakly correlated
2 ZNF486 454 8.6 Weakly correlated
3 ZNF92 402 28.9 Weakly correlated
4 ZNF84 366 99.0 Weakly correlated
5 ZNF490 302 43.0 Weakly correlated
6 ZIM3 191 87.0 Weakly correlated
7 ZNF263 165 180.0 Weakly correlated
8 ZNF317 151 99.0 Weakly correlated
9 ZNF705B 129 28.9 Weakly correlated
10 ZNF248 126 99.0 Weakly correlated
11 ZNF679 115 28.9 Weakly correlated
12 ZNF705D 109 28.9 Weakly correlated
13 ZNF8 106 99.0 Weakly correlated
14 ZNF558 84 99.0 Weakly correlated
15 ZNF433 67 43.0 Weakly correlated
16 ZNF680 61 28.9 Weakly correlated
17 ZNF429 60 28.9 Weakly correlated
18 ZNF485 55 94.0 Weakly correlated
19 ZNF723 52 15.2 Weakly correlated
20 ZNF394 48 99.0 Weakly correlated
21 ZNF136 44 74.0 Highly correlated
22 ZNF793 38 99.0 Weakly correlated
23 ZNF133 34 99.0 Weakly correlated
24 ZNF534 34 19.6 Weakly correlated
25 ZNF2 30 99.0 Weakly correlated
26 ZNF766 30 43.0 Weakly correlated
27 ZNF479 28 6.4 Weakly correlated
28 ZFP37 27 99.0 Weakly correlated
29 ZNF274 23 99.0 Weakly correlated
30 ZNF471 23 94.0 Weakly correlated
31 ZFP69B 22 99.0 Weakly correlated
32 ZNF101 22 43.0 Weakly correlated
33 ZNF18 22 160.0 Weakly correlated
34 ZNF251 21 94.0 Weakly correlated
35 ZNF28 21 28.9 Weakly correlated
36 ZNF528 20 43.0 Weakly correlated
37 ZNF786 19 99.0 Weakly correlated
38 ZNF324 18 99.0 Weakly correlated
39 ZFP57 17 87.0 Weakly correlated
40 ZKSCAN1 17 160.0 Weakly correlated
41 ZNF506 17 28.9 Weakly correlated
42 ZNF160 15 74.0 Highly correlated
43 ZNF250 15 99.0 Weakly correlated
44 ZNF483 15 99.0 Weakly correlated
45 ZNF182 13 99.0 Weakly correlated
46 ZNF10 11 99.0 Weakly correlated
47 ZNF585A 11 99.0 Weakly correlated
48 ZNF589 11 28.9 Weakly correlated
49 ZNF610 11 28.9 Weakly correlated
50 ZNF264 10 99.0 Weakly correlated
51 ZNF320 10 28.9 Weakly correlated
52 ZNF175 9 94.0 Weakly correlated
53 ZNF554 9 99.0 Weakly correlated
54 ZNF114 8 28.9 Weakly correlated
55 ZNF140 8 99.0 Weakly correlated
56 ZNF230 8 28.9 Weakly correlated
57 ZNF701 8 28.9 Weakly correlated
58 ZNF223 7 43.0 Weakly correlated
59 ZNF441 7 43.0 Weakly correlated
60 ZNF519 7 19.6 Weakly correlated
61 ZNF792 7 94.0 Weakly correlated
62 ZNF257 6 0.0 Weakly correlated
63 ZNF287 6 99.0 Weakly correlated
64 ZNF440 6 28.9 Weakly correlated
65 ZNF585B 6 99.0 Weakly correlated
66 ZNF597 6 94.0 Weakly correlated
67 ZNF677 6 99.0 Weakly correlated
68 ZNF823 6 43.0 Weakly correlated
69 ZNF211 5 94.0 Weakly correlated
70 ZNF334 5 99.0 Weakly correlated
71 ZNF337 5 43.0 Weakly correlated
72 ZNF584 5 99.0 Weakly correlated
73 ZKSCAN8 4 160.0 Weakly correlated
74 ZNF141 4 43.0 Weakly correlated
75 ZNF202 4 160.0 Weakly correlated
76 ZNF222 4 43.0 Weakly correlated
77 ZNF26 4 99.0 Weakly correlated
78 ZNF418 4 43.0 Weakly correlated
79 ZNF547 4 74.0 Highly correlated
80 ZNF563 4 28.9 Weakly correlated
81 ZNF707 4 74.0 Highly correlated
82 ZFP28 3 99.0 Weakly correlated
83 ZNF169 3 94.0 Weakly correlated
84 ZNF224 3 69.0 Moderately correlated
85 ZNF283 3 99.0 Weakly correlated
86 ZNF331 3 94.0 Weakly correlated
87 ZNF44 3 43.0 Weakly correlated
88 ZNF468 3 28.9 Weakly correlated
89 ZNF480 3 43.0 Weakly correlated
90 ZNF583 3 99.0 Weakly correlated
91 ZNF735 3 28.9 Weakly correlated
92 ZNF778 3 74.0 Highly correlated
93 ZNF879 3 99.0 Weakly correlated
94 ZNF157 2 99.0 Weakly correlated
95 ZNF197 2 99.0 Weakly correlated
96 ZNF273 2 28.9 Weakly correlated
97 ZNF354A 2 99.0 Weakly correlated
98 ZNF425 2 94.0 Weakly correlated
99 ZNF510 2 99.0 Weakly correlated
100 ZNF549 2 87.0 Weakly correlated
101 ZNF560 2 43.0 Weakly correlated
102 ZNF567 2 99.0 Weakly correlated
103 ZNF573 2 94.0 Weakly correlated
104 ZNF75D 2 94.0 Weakly correlated
105 RBAK 1 99.0 Weakly correlated
106 ZFP30 1 99.0 Weakly correlated
107 ZFP69 1 99.0 Weakly correlated
108 ZFP90 1 99.0 Weakly correlated
109 ZIK1 1 87.0 Weakly correlated
110 ZKSCAN5 1 160.0 Weakly correlated
111 ZNF135 1 94.0 Weakly correlated
112 ZNF189 1 99.0 Weakly correlated
113 ZNF205 1 180.0 Weakly correlated
114 ZNF225 1 74.0 Highly correlated
115 ZNF253 1 19.6 Weakly correlated
116 ZNF284 1 43.0 Weakly correlated
117 ZNF347 1 43.0 Weakly correlated
118 ZNF442 1 43.0 Weakly correlated
119 ZNF454 1 99.0 Weakly correlated
120 ZNF470 1 99.0 Weakly correlated
121 ZNF530 1 28.9 Weakly correlated
122 ZNF570 1 99.0 Weakly correlated
123 ZNF57 1 28.9 Weakly correlated
124 ZNF607 1 43.0 Weakly correlated
125 ZNF613 1 99.0 Weakly correlated
126 ZNF641 1 99.0 Weakly correlated
127 ZNF649 1 28.9 Weakly correlated
128 ZNF671 1 94.0 Weakly correlated
129 ZNF681 1 28.9 Weakly correlated
130 ZNF682 1 28.9 Weakly correlated
131 ZNF695 1 28.9 Weakly correlated
132 ZNF700 1 28.9 Weakly correlated
133 ZNF730 1 19.6 Weakly correlated
134 ZNF777 1 319.0 Weakly correlated
135 ZNF77 1 87.0 Weakly correlated
136 ZNF808 1 19.6 Weakly correlated
137 ZNF816 1 28.9 Weakly correlated
138 ZNF878 1 43.0 Weakly correlated
139 ZNF91 1 6.0 Weakly correlated
140 ZNF93 1 8.6 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF84 348 99.0 Weakly correlated
2 ZNF486 346 8.6 Weakly correlated
3 ZNF92 325 28.9 Weakly correlated
4 ZNF490 269 43.0 Weakly correlated
5 ZNF382 228 99.0 Weakly correlated
6 ZIM3 135 87.0 Weakly correlated
7 ZNF248 124 99.0 Weakly correlated
8 ZNF8 99 99.0 Weakly correlated
9 ZNF263 97 180.0 Weakly correlated
10 ZNF433 61 43.0 Weakly correlated
11 ZNF429 48 28.9 Weakly correlated
12 ZNF485 46 94.0 Weakly correlated
13 ZNF136 39 74.0 Highly correlated
14 ZNF317 39 99.0 Weakly correlated
15 ZNF723 35 15.2 Weakly correlated
16 ZNF680 25 28.9 Weakly correlated
17 ZNF534 23 19.6 Weakly correlated
18 ZNF558 19 99.0 Weakly correlated
19 ZNF793 18 99.0 Weakly correlated
20 ZNF479 17 6.4 Weakly correlated
21 ZNF250 15 99.0 Weakly correlated
22 ZNF786 14 99.0 Weakly correlated
23 ZNF160 13 74.0 Highly correlated
24 ZNF133 12 99.0 Weakly correlated
25 ZNF101 12 43.0 Weakly correlated
26 ZNF679 11 28.9 Weakly correlated
27 ZNF471 11 94.0 Weakly correlated
28 ZFP57 11 87.0 Weakly correlated
29 ZNF705D 10 28.9 Weakly correlated
30 ZNF10 9 99.0 Weakly correlated
31 ZNF705B 9 28.9 Weakly correlated
32 ZNF324 8 99.0 Weakly correlated
33 ZNF506 7 28.9 Weakly correlated
34 ZNF28 7 28.9 Weakly correlated
35 ZNF264 6 99.0 Weakly correlated
36 ZNF677 6 99.0 Weakly correlated
37 ZNF18 6 160.0 Weakly correlated
38 ZNF585A 6 99.0 Weakly correlated
39 ZNF528 5 43.0 Weakly correlated
40 ZNF792 4 94.0 Weakly correlated
41 ZNF140 4 99.0 Weakly correlated
42 ZNF337 4 43.0 Weakly correlated
43 ZNF44 3 43.0 Weakly correlated
44 ZNF251 3 94.0 Weakly correlated
45 ZNF2 3 99.0 Weakly correlated
46 ZNF257 3 0.0 Weakly correlated
47 ZNF701 3 28.9 Weakly correlated
48 ZNF563 3 28.9 Weakly correlated
49 ZKSCAN1 3 160.0 Weakly correlated
50 ZNF202 3 160.0 Weakly correlated
51 ZNF483 2 99.0 Weakly correlated
52 ZNF735 2 28.9 Weakly correlated
53 ZFP69B 2 99.0 Weakly correlated
54 ZNF283 2 99.0 Weakly correlated
55 ZNF823 2 43.0 Weakly correlated
56 ZNF141 2 43.0 Weakly correlated
57 ZNF169 2 94.0 Weakly correlated
58 ZNF394 2 99.0 Weakly correlated
59 ZNF440 2 28.9 Weakly correlated
60 ZNF480 2 43.0 Weakly correlated
61 ZNF26 2 99.0 Weakly correlated
62 ZNF320 2 28.9 Weakly correlated
63 ZNF567 2 99.0 Weakly correlated
64 ZNF879 2 99.0 Weakly correlated
65 ZNF519 2 19.6 Weakly correlated
66 ZNF766 2 43.0 Weakly correlated
67 ZFP90 1 99.0 Weakly correlated
68 ZNF554 1 99.0 Weakly correlated
69 ZNF225 1 74.0 Highly correlated
70 ZIK1 1 87.0 Weakly correlated
71 ZNF584 1 99.0 Weakly correlated
72 ZNF224 1 69.0 Moderately correlated
73 ZNF816 1 28.9 Weakly correlated
74 ZNF573 1 94.0 Weakly correlated
75 ZKSCAN5 1 160.0 Weakly correlated
76 ZNF211 1 94.0 Weakly correlated
77 ZNF157 1 99.0 Weakly correlated
78 ZNF589 1 28.9 Weakly correlated
79 ZFP28 1 99.0 Weakly correlated
80 ZNF695 1 28.9 Weakly correlated
81 ZNF585B 1 99.0 Weakly correlated
82 ZNF682 1 28.9 Weakly correlated
83 ZNF230 1 28.9 Weakly correlated
84 ZNF93 1 8.6 Weakly correlated
85 ZNF287 1 99.0 Weakly correlated
86 ZNF347 1 43.0 Weakly correlated
87 ZNF425 1 94.0 Weakly correlated
88 ZNF175 1 94.0 Weakly correlated
89 ZNF583 1 99.0 Weakly correlated
90 ZNF707 1 74.0 Highly correlated
91 ZNF649 1 28.9 Weakly correlated
92 ZNF671 1 94.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZFP57 87.0 Weakly correlated
2 ZNF18 160.0 Weakly correlated
3 ZNF248 99.0 Weakly correlated
4 ZNF263 180.0 Weakly correlated
5 ZNF429 28.9 Weakly correlated
6 ZNF486 8.6 Weakly correlated
7 ZNF677 99.0 Weakly correlated
8 ZNF680 28.9 Weakly correlated
9 ZNF705B 28.9 Weakly correlated
10 ZNF84 99.0 Weakly correlated
11 ZNF92 28.9 Weakly correlated