ZRdb KZFP & Repeats
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LINE_L1PA15-16_5END

  • Name
    L1PA15-16_5END
  • Repbase
    L1PA16_5
  • Type
    LINE
  • Emergence
    74.0 Mya
  • Dfam Id
    DF0000334
Description :

The 5' UTR region from 733 to 1238 contains 4+ copies of a ~113 bptandem repeat unit. (These occur in variable numbers.)
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
ttttttttcccaagatggcggattagaggcttttagcgtgcctcagccacttggaaatagcaagatagtgcataaagatcaactctgtgagctttaattcaagaaggaaaatgggaatccaccggaatcgtgaaggacaccccagatcccggggaggagaacgcgggcaaacagcccccgtgacggcgtccggctgataaaagtgagtgaagccccagtacgtgagagaggcagagagcctccctctgtgactcacctttccactggggatccgagcaacccaggccgagggagagcactttgtttctcccaagccctggagctaacttggggagaggcttggagacgctgtgagggaaagacaccgggaaaagctgcaggcattttcccagacccgggaccgagagcaggacgccatttttaatccgggcgcatacaaagtcagccattctttggcgacccggcagcgtggccgcgcaggcattttagtctcgggccagagattggagcgcctgctctggagcggggtaggggcctccacagccagaactgtggaaagcgcctcagcagtaggcgctggaattgtgctctcccccgtcgcaggcctggggcgggaggagagctgctacagctgcggtttctcctgggcggcgagacttgcagccagggccagcttggcgacctggaaccggtctgcgtgtgccattgctgggtgccccagcctgctcccctgagatcgtggtgcagcggggccctctccgctccacgcccaggcagatctccaggcattcggagcacccgctcgcctggatcagcagcctgagccgccccacccttcctgtgcanagatcgtggtgcagcggggccctctccgctccacgcccaggcagatctccaggcattcggagcacccgctcgcctggatcagcagcctgagccgccccacccttcctgtgcagagatcntggtgcagcggggccctctccgctccacgcccaggcagatctccaggcattcggagcacccgctcgcctggatcagcagcctgagccgccccacccttcctgtgcagagatcntggtgcagnggggccctctccgctccacgcccaggcagatctccaggcatccggagcacccgctcncctggattagnagcctgggccgccccacccttcccgtgcagagancttggggccgaggaggtttcccagctccacgcccaggcacacctccgggcgcttggtggccgcccactggattctccctcggcgctggtgcttgtgcctgccatcgggggacctgtaggcgggcctgcccggtccggccccgcccatcttggcccccgcccccccggggctgagcagggagctcagaccactgtgcactccacggatcagcccattgcctgaggcaacagagagcttctcccagtaaacaaggatcaagtatatacccagccgcgttggccgcagccggctcttacccataagcgccatctactggcttgtaggtcgaactgcacagcccaatataaaacctgccgacagaagtgcatagggctatagaagcaaagccaaaagaccctacccagcattctctacagtcacaccccctagggagggggggaaagggaaagggaaagaaaaaaataataatattatagggaaagaaagaaaagaaaaaatcctacccgcacgaaaataattacaaaaattagaagtgncagcntctccagatgagaaggaaccagcgnaagaattctggcancatgaaaaancngaatgtngtgacaccnccaaaggatcacactagctctccagcaatggntcctaaccaaaatgaaaactcngaaatgacagataaagaattcaaagcatggattgcaaggaagctcaatgagatccaagagaaagttgaaaaccaacacaaagaaacttcnaaagcaatccaggaaatgaaggaagagataaacatcttaaaaaaaaancaatcagaacttctggaantgaaaaactcacttaaggaatttcaaaatacanttgaaagctttancaatagactagaccaagcagaagaaagaatttcagagctcgaagaccggtctttcgaattaacccagtcagacaaaaataaagaaaaaagaattttaaaaaatgaacaaagccttcgagaaatatgggattatgtaaagcgaccaaacctacgaattattggcgttcctgagagagaaggagaaaaagtaaanaacttggaaaacatatttgagggaataattcaggaaaacttccctagtcttgctagaganntagacatccagatacaagaagctcagagaacacctgngagatactatacaaaangancatcaccaaggcatatagtcatcagactatccaaggtcaacgctaaagaaaaaaatcttaaaggcagcnagagaaaagcgtcagatnacctataaaggaaancccatcagactaacagcggacttctcagcagaaaccttacaagccagaagagattggggncctattttcagcctccttaaagaaaanaaatnccagccaagaatttcgtatccngccaaactaagcttcataaatgaaggagaaataaagtcttttccagacaagcaaacgctaagggaattcgtcaccaccagaccagccctacaagaaatgctnaaaggagttctaaacatggaaacgaaagaacgatacctgctaccacaaaaacacacttaagtacanagctcacaggncctataaagcaacnacacaatagaaactacaaagcaaccagctaacaacttcacgataggancaaaacctcacatntcaatattaacnttgaatgtaaatggcctaaatgctccacttaaaagatacagagtggcaaantggataaaaaaacaagacccaaccatctgctgtcttcaagagacccacctnacacgtaangac
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 243 99.0 Weakly correlated
2 ZNF160 87 74.0 Highly correlated
3 ZNF2 74 99.0 Weakly correlated
4 ZNF793 71 99.0 Weakly correlated
5 ZNF490 67 43.0 Weakly correlated
6 ZNF263 56 180.0 Weakly correlated
7 ZNF337 51 43.0 Weakly correlated
8 ZNF317 46 99.0 Weakly correlated
9 ZIM3 42 87.0 Weakly correlated
10 ZNF766 34 43.0 Weakly correlated
11 ZNF680 32 28.9 Weakly correlated
12 ZKSCAN1 23 160.0 Weakly correlated
13 ZNF92 23 28.9 Weakly correlated
14 ZNF394 22 99.0 Weakly correlated
15 ZNF222 20 43.0 Weakly correlated
16 ZNF230 16 28.9 Weakly correlated
17 ZNF679 16 28.9 Weakly correlated
18 ZNF701 16 28.9 Weakly correlated
19 ZFP37 14 99.0 Weakly correlated
20 ZNF18 14 160.0 Weakly correlated
21 ZNF274 14 99.0 Weakly correlated
22 ZNF101 11 43.0 Weakly correlated
23 ZNF324 11 99.0 Weakly correlated
24 ZNF479 11 6.4 Weakly correlated
25 ZNF723 11 15.2 Weakly correlated
26 ZNF197 9 99.0 Weakly correlated
27 ZNF554 9 99.0 Weakly correlated
28 ZNF705D 9 28.9 Weakly correlated
29 ZFP69B 8 99.0 Weakly correlated
30 ZNF248 8 99.0 Weakly correlated
31 ZNF320 8 28.9 Weakly correlated
32 ZNF534 8 19.6 Weakly correlated
33 ZNF136 7 74.0 Highly correlated
34 ZNF84 7 99.0 Weakly correlated
35 ZNF133 6 99.0 Weakly correlated
36 ZNF182 6 99.0 Weakly correlated
37 ZNF528 6 43.0 Weakly correlated
38 ZNF547 6 74.0 Highly correlated
39 ZNF589 6 28.9 Weakly correlated
40 ZNF695 6 28.9 Weakly correlated
41 ZNF251 5 94.0 Weakly correlated
42 ZNF425 5 94.0 Weakly correlated
43 ZNF506 5 28.9 Weakly correlated
44 ZNF610 5 28.9 Weakly correlated
45 ZNF705B 5 28.9 Weakly correlated
46 ZNF735 5 28.9 Weakly correlated
47 ZKSCAN8 4 160.0 Weakly correlated
48 ZNF471 4 94.0 Weakly correlated
49 ZNF483 4 99.0 Weakly correlated
50 ZNF486 4 8.6 Weakly correlated
51 ZNF584 4 99.0 Weakly correlated
52 ZNF786 4 99.0 Weakly correlated
53 ZNF114 3 28.9 Weakly correlated
54 ZNF282 3 319.0 Weakly correlated
55 ZNF287 3 99.0 Weakly correlated
56 ZNF28 3 28.9 Weakly correlated
57 ZNF519 3 19.6 Weakly correlated
58 ZNF530 3 28.9 Weakly correlated
59 ZNF736 3 43.0 Weakly correlated
60 ZFP57 2 87.0 Weakly correlated
61 ZNF140 2 99.0 Weakly correlated
62 ZNF175 2 94.0 Weakly correlated
63 ZNF225 2 74.0 Highly correlated
64 ZNF549 2 87.0 Weakly correlated
65 ZNF558 2 99.0 Weakly correlated
66 ZNF641 2 99.0 Weakly correlated
67 ZNF792 2 94.0 Weakly correlated
68 ZNF879 2 99.0 Weakly correlated
69 ZNF8 2 99.0 Weakly correlated
70 ZFP90 1 99.0 Weakly correlated
71 ZNF141 1 43.0 Weakly correlated
72 ZNF202 1 160.0 Weakly correlated
73 ZNF211 1 94.0 Weakly correlated
74 ZNF223 1 43.0 Weakly correlated
75 ZNF250 1 99.0 Weakly correlated
76 ZNF253 1 19.6 Weakly correlated
77 ZNF257 1 0.0 Weakly correlated
78 ZNF304 1 99.0 Weakly correlated
79 ZNF334 1 99.0 Weakly correlated
80 ZNF347 1 43.0 Weakly correlated
81 ZNF43 1 43.0 Weakly correlated
82 ZNF440 1 28.9 Weakly correlated
83 ZNF441 1 43.0 Weakly correlated
84 ZNF44 1 43.0 Weakly correlated
85 ZNF470 1 99.0 Weakly correlated
86 ZNF485 1 94.0 Weakly correlated
87 ZNF510 1 99.0 Weakly correlated
88 ZNF540 1 87.0 Weakly correlated
89 ZNF544 1 0.0 Weakly correlated
90 ZNF559 1 74.0 Highly correlated
91 ZNF567 1 99.0 Weakly correlated
92 ZNF573 1 94.0 Weakly correlated
93 ZNF582 1 99.0 Weakly correlated
94 ZNF585A 1 99.0 Weakly correlated
95 ZNF585B 1 99.0 Weakly correlated
96 ZNF597 1 94.0 Weakly correlated
97 ZNF607 1 43.0 Weakly correlated
98 ZNF611 1 19.6 Weakly correlated
99 ZNF613 1 99.0 Weakly correlated
100 ZNF649 1 28.9 Weakly correlated
101 ZNF674 1 99.0 Weakly correlated
102 ZNF677 1 99.0 Weakly correlated
103 ZNF705E 1 0.0 Weakly correlated
104 ZNF730 1 19.6 Weakly correlated
105 ZNF75A 1 94.0 Weakly correlated
106 ZNF777 1 319.0 Weakly correlated
107 ZNF778 1 74.0 Highly correlated
108 ZNF845 1 28.9 Weakly correlated
109 ZNF860 1 0.0 Weakly correlated
110 ZNF878 1 43.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF160 80 74.0 Highly correlated
2 ZNF490 63 43.0 Weakly correlated
3 ZNF337 51 43.0 Weakly correlated
4 ZNF382 50 99.0 Weakly correlated
5 ZNF2 33 99.0 Weakly correlated
6 ZIM3 32 87.0 Weakly correlated
7 ZNF317 21 99.0 Weakly correlated
8 ZNF793 12 99.0 Weakly correlated
9 ZNF680 10 28.9 Weakly correlated
10 ZNF263 10 180.0 Weakly correlated
11 ZNF136 7 74.0 Highly correlated
12 ZNF92 6 28.9 Weakly correlated
13 ZNF248 6 99.0 Weakly correlated
14 ZNF101 6 43.0 Weakly correlated
15 ZNF479 5 6.4 Weakly correlated
16 ZNF534 5 19.6 Weakly correlated
17 ZNF735 4 28.9 Weakly correlated
18 ZNF274 4 99.0 Weakly correlated
19 ZNF723 4 15.2 Weakly correlated
20 ZNF84 4 99.0 Weakly correlated
21 ZNF320 3 28.9 Weakly correlated
22 ZNF287 3 99.0 Weakly correlated
23 ZNF506 3 28.9 Weakly correlated
24 ZNF766 3 43.0 Weakly correlated
25 ZNF471 3 94.0 Weakly correlated
26 ZNF133 2 99.0 Weakly correlated
27 ZNF549 2 87.0 Weakly correlated
28 ZNF282 2 319.0 Weakly correlated
29 ZNF197 2 99.0 Weakly correlated
30 ZNF879 2 99.0 Weakly correlated
31 ZNF530 2 28.9 Weakly correlated
32 ZNF701 2 28.9 Weakly correlated
33 ZNF589 1 28.9 Weakly correlated
34 ZKSCAN1 1 160.0 Weakly correlated
35 ZNF584 1 99.0 Weakly correlated
36 ZNF582 1 99.0 Weakly correlated
37 ZNF567 1 99.0 Weakly correlated
38 ZKSCAN8 1 160.0 Weakly correlated
39 ZNF18 1 160.0 Weakly correlated
40 ZFP57 1 87.0 Weakly correlated
41 ZNF250 1 99.0 Weakly correlated
42 ZNF44 1 43.0 Weakly correlated
43 ZNF786 1 99.0 Weakly correlated
44 ZFP90 1 99.0 Weakly correlated
45 ZNF679 1 28.9 Weakly correlated
46 ZFP69B 1 99.0 Weakly correlated
47 ZNF347 1 43.0 Weakly correlated
48 ZNF257 1 0.0 Weakly correlated
49 ZNF573 1 94.0 Weakly correlated
50 ZNF677 1 99.0 Weakly correlated
51 ZNF736 1 43.0 Weakly correlated
52 ZNF175 1 94.0 Weakly correlated
53 ZNF211 1 94.0 Weakly correlated
54 ZNF230 1 28.9 Weakly correlated
55 ZNF485 1 94.0 Weakly correlated
56 ZNF585B 1 99.0 Weakly correlated
57 ZNF695 1 28.9 Weakly correlated
58 ZNF641 1 99.0 Weakly correlated
59 ZNF607 1 43.0 Weakly correlated
60 ZNF554 1 99.0 Weakly correlated
61 ZNF486 1 8.6 Weakly correlated
62 ZNF519 1 19.6 Weakly correlated
63 ZNF528 1 43.0 Weakly correlated
64 ZNF792 1 94.0 Weakly correlated
65 ZNF182 1 99.0 Weakly correlated
66 ZNF141 1 43.0 Weakly correlated
67 ZNF140 1 99.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF136 74.0 Highly correlated
2 ZNF248 99.0 Weakly correlated
3 ZNF263 180.0 Weakly correlated
4 ZNF2 99.0 Weakly correlated
5 ZNF317 99.0 Weakly correlated
6 ZNF337 43.0 Weakly correlated
7 ZNF490 43.0 Weakly correlated
8 ZNF680 28.9 Weakly correlated
9 ZNF793 99.0 Weakly correlated
10 ZNF92 28.9 Weakly correlated